preribosome Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description Any complex of pre-rRNAs, ribosomal proteins, and associated proteins formed during ribosome biogenesis. (Gene Ontology, GO_0030684)
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Genes

185 proteins co-occuring with the preribosome cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
RIOK2 RIO kinase 2 1.86486
NUCLEOLIN nucleolin multifunctional protein 1.67386
NOB1 NIN1/RPN12 binding protein 1 homolog (S. cerevisiae) 1.65332
LTV1 LTV1 ribosome biogenesis factor 1.6036
UTP20 UTP20, small subunit (SSU) processome component, homolog (yeast) 1.56333
RSL24D1 ribosomal L24 domain containing 1 1.54857
UTP18 UTP18 small subunit (SSU) processome component homolog (yeast) 1.52033
UTP6 UTP6, small subunit (SSU) processome component, homolog (yeast) 1.51751
BMS1 BMS1 ribosome biogenesis factor 1.47118
RRP12 ribosomal RNA processing 12 homolog (S. cerevisiae) 1.44742
RCL1 RNA terminal phosphate cyclase-like 1 1.39239
LAS1L LAS1-like (S. cerevisiae) 1.3763
WDR12 WD repeat domain 12 1.37299
KRR1 KRR1, small subunit (SSU) processome component, homolog (yeast) 1.31519
PES1 pescadillo ribosomal biogenesis factor 1 1.3125
UTP23 UTP23, small subunit (SSU) processome component, homolog (yeast) 1.30927
NIP7 NIP7, nucleolar pre-rRNA processing protein 1.28569
TSR1 TSR1, 20S rRNA accumulation, homolog (S. cerevisiae) 1.25917
NOC4L nucleolar complex associated 4 homolog (S. cerevisiae) 1.25653
FBLL1 fibrillarin-like 1 1.2518
FTSJ3 FtsJ homolog 3 (E. coli) 1.25127
PIN4 peptidylprolyl cis/trans isomerase, NIMA-interacting 4 1.21686
TXNL4B thioredoxin-like 4B 1.1952
PDCD11 programmed cell death 11 1.19057
CIRH1A cirrhosis, autosomal recessive 1A (cirhin) 1.16901
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 1.16542
WDR43 WD repeat domain 43 1.15672
NMD3 NMD3 ribosome export adaptor 1.14187
RPS19 ribosomal protein S19 1.13829
RPL5 ribosomal protein L5 1.13778
PWP1 PWP1 homolog (S. cerevisiae) 1.13778
UTP15 UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae) 1.12143
NSA2 NSA2 ribosome biogenesis homolog (S. cerevisiae) 1.09798
CEBPZ CCAAT/enhancer binding protein (C/EBP), zeta 1.09747
RPL26L1 ribosomal protein L26-like 1 1.0873
UBTF upstream binding transcription factor, RNA polymerase I 1.08628
BOP1 block of proliferation 1 1.07917
DDX52 DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 1.07714
EBNA1BP2 EBNA1 binding protein 2 1.05741
GTPBP4 GTP binding protein 4 1.04532
TEX10 testis expressed 10 1.0418
KRI1 KRI1 homolog (S. cerevisiae) 1.01883
PNO1 partner of NOB1 homolog (S. cerevisiae) 1.01784
NHP2 NHP2 ribonucleoprotein 1.00991
DHX15 DEAH (Asp-Glu-Ala-His) box helicase 15 1.00497
WDR18 WD repeat domain 18 0.991225
RPF2 ribosome production factor 2 homolog (S. cerevisiae) 0.990736
RPS14 ribosomal protein S14 0.972747
NAA20 N(alpha)-acetyltransferase 20, NatB catalytic subunit 0.963588
RPL11 ribosomal protein L11 0.95831
FAM207A family with sequence similarity 207, member A 0.957352
TRMT112 tRNA methyltransferase 11-2 homolog (S. cerevisiae) 0.944007
SENP3 SUMO1/sentrin/SMT3 specific peptidase 3 0.93596
RPL26 ribosomal protein L26 0.933129
RASL11A RAS-like, family 11, member A 0.927013
ZNF106 zinc finger protein 106 0.919982
DCAF13 DDB1 and CUL4 associated factor 13 0.90739
PWP2 PWP2 periodic tryptophan protein homolog (yeast) 0.896257
NOL10 nucleolar protein 10 0.884705
RRP36 ribosomal RNA processing 36 homolog (S. cerevisiae) 0.881477
RASL11B RAS-like, family 11, member B 0.87733
UTP14A UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast) 0.86077
NOP56 NOP56 ribonucleoprotein 0.86077
RPS29 ribosomal protein S29 0.844237
RPL7A ribosomal protein L7a 0.837351
NOP58 NOP58 ribonucleoprotein 0.836892
POLI polymerase (DNA directed) iota 0.832761
RNASEH2A ribonuclease H2, subunit A 0.817158
RRP9 ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast) 0.813487
RRP1 ribosomal RNA processing 1 0.8089
RPS3 ribosomal protein S3 0.806606
SNRNP200 small nuclear ribonucleoprotein 200kDa (U5) 0.806148
FTSJ2 FtsJ RNA methyltransferase homolog 2 (E. coli) 0.791939
EMG1 EMG1 N1-specific pseudouridine methyltransferase 0.791022
RPS17 ribosomal protein S17 0.791022
ISG20L2 interferon stimulated exonuclease gene 20kDa-like 2 0.773188
BYSL bystin-like 0.769539
RPS15 ribosomal protein S15 0.765893
RIOK3 RIO kinase 3 0.758161
PAPD5 PAP associated domain containing 5 0.738713
RRP8 ribosomal RNA processing 8, methyltransferase, homolog (yeast) 0.725705
NAT10 N-acetyltransferase 10 (GCN5-related) 0.72258
RPS24 ribosomal protein S24 0.716346
DNLZ DNL-type zinc finger 0.714126
DDX47 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 0.709251
TBL3 transducin (beta)-like 3 0.701304
GRWD1 glutamate-rich WD repeat containing 1 0.681591
MDN1 MDN1, midasin homolog (yeast) 0.679413
XPO1 exportin 1 0.678978
TSR2 TSR2, 20S rRNA accumulation, homolog (S. cerevisiae) 0.675499
WDR46 WD repeat domain 46 0.673762
DDX19B DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B 0.671593
LMO4 LIM domain only 4 0.66726
EIF6 eukaryotic translation initiation factor 6 0.658188
GNL2 guanine nucleotide binding protein-like 2 (nucleolar) 0.630318
PAK1IP1 PAK1 interacting protein 1 0.620104
LYAR Ly1 antibody reactive 0.616285
TP53 tumor protein p53 0.615861
RPS18P12 ribosomal protein S18 pseudogene 12 0.613742
RNMT RNA (guanine-7-) methyltransferase 0.606128
RPS18 ribosomal protein S18 0.605284
RPP25 ribonuclease P/MRP 25kDa subunit 0.597697
NXT1 nuclear transport factor 2-like export factor 1 0.594332
RPL35 ribosomal protein L35 0.579669
TRMT10C tRNA methyltransferase 10 homolog C (S. cerevisiae) 0.572994
LSG1 large 60S subunit nuclear export GTPase 1 0.571745
PELP1 proline, glutamate and leucine rich protein 1 0.560943
NOL9 nucleolar protein 9 0.5597
RPL3 ribosomal protein L3 0.557629
NOLC1 nucleolar and coiled-body phosphoprotein 1 0.551012
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 0.53906
ZPR1 ZPR1 zinc finger 0.535361
MINA MYC induced nuclear antigen 0.530028
SBDS Shwachman-Bodian-Diamond syndrome 0.522659
NXF1 nuclear RNA export factor 1 0.519389
RPL37 ribosomal protein L37 0.477233
DKC1 dyskeratosis congenita 1, dyskerin 0.468802
GNL3L guanine nucleotide binding protein-like 3 (nucleolar)-like 0.468401
GNL1 guanine nucleotide binding protein-like 1 0.4608
RPS27 ribosomal protein S27 0.438937
RPL13A ribosomal protein L13a 0.430253
XRN2 5'-3' exoribonuclease 2 0.420036
RPL15 ribosomal protein L15 0.414946
TCOF1 Treacher Collins-Franceschetti syndrome 1 0.402081
ASCC3 activating signal cointegrator 1 complex subunit 3 0.398975
DDX24 DEAD (Asp-Glu-Ala-Asp) box helicase 24 0.397811
NOP2 NOP2 nucleolar protein 0.396648
RPL14 ribosomal protein L14 0.390841
RNASE1 ribonuclease, RNase A family, 1 (pancreatic) 0.390068
RUVBL1 RuvB-like AAA ATPase 1 0.388137
GEMIN4 gem (nuclear organelle) associated protein 4 0.383509
MYBBP1A MYB binding protein (P160) 1a 0.383124
FTSJ1 FtsJ RNA methyltransferase homolog 1 (E. coli) 0.376202
RPS20 ribosomal protein S20 0.356705
RPL6 ribosomal protein L6 0.356324
KCNG1 potassium channel, voltage gated modifier subfamily G, member 1 0.350622
RPS26 ribosomal protein S26 0.34645
RPL35A ribosomal protein L35a 0.343042
NUTF2 nuclear transport factor 2 0.338128
MRPL13 mitochondrial ribosomal protein L13 0.337751
UBA2 ubiquitin-like modifier activating enzyme 2 0.331342
CCDC62 coiled-coil domain containing 62 0.328708
LARS leucyl-tRNA synthetase 0.325702
RPS9 ribosomal protein S9 0.318205
PPAN peter pan homolog (Drosophila) 0.312224
RAB34 RAB34, member RAS oncogene family 0.291417
RNASEH1 ribonuclease H1 0.290678
RPL7P32 ribosomal protein L7 pseudogene 32 0.286245
CDKN2A cyclin-dependent kinase inhibitor 2A 0.280716
EEF2K eukaryotic elongation factor 2 kinase 0.278141
NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 0.275936
RNASET2 ribonuclease T2 0.274468
RPS10 ribosomal protein S10 0.255107
SRPK1 SRSF protein kinase 1 0.252202
NUP88 nucleoporin 88kDa 0.241716
CLCN5 chloride channel, voltage-sensitive 5 0.240996
DDX20 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 0.234174
RPLP0 ribosomal protein, large, P0 0.214366
DNAH8 dynein, axonemal, heavy chain 8 0.209513
RPS5 ribosomal protein S5 0.208825
CSN1S1 casein alpha s1 0.204718
WIPF2 WAS/WASL interacting protein family, member 2 0.200999
CFI complement factor I 0.196669
EFNA1 ephrin-A1 0.18859
RUVBL2 RuvB-like AAA ATPase 2 0.18859
DGCR8 DGCR8 microprocessor complex subunit 0.183328
GOLPH3 golgi phosphoprotein 3 (coat-protein) 0.180045
MKI67 marker of proliferation Ki-67 0.178011
DROSHA drosha, ribonuclease type III 0.17687
RPL7 ribosomal protein L7 0.171149
IPO7 importin 7 0.166884
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase 0.165932
MGAM maltase-glucoamylase 0.15776
CSNK2B casein kinase 2, beta polypeptide 0.136207
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.134007
RARS arginyl-tRNA synthetase 0.133146
DNASE1 deoxyribonuclease I 0.133018
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.130709
TOP1 topoisomerase (DNA) I 0.127644
PRC1 protein regulator of cytokinesis 1 0.127616
XRCC6 X-ray repair complementing defective repair in Chinese hamster cells 6 0.123268
RPS6 ribosomal protein S6 0.120708
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 0.120119
G6PD glucose-6-phosphate dehydrogenase 0.114524
EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 0.114207