primary cell wall Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A plant cell wall that is still able to expand, permitting cell growth. Primary cell walls contain more pectin than secondary walls and no lignin is present. (Gene Ontology, GO_0009530)
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56 proteins co-occuring with the primary cell wall cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
AGPS alkylglycerone phosphate synthase 2.4977
CABYR calcium binding tyrosine-(Y)-phosphorylation regulated 1.5943
GNB1L guanine nucleotide binding protein (G protein), beta polypeptide 1-like 1.34338
FSCB fibrous sheath CABYR binding protein 1.33576
UGDH UDP-glucose 6-dehydrogenase 1.32221
MANBA mannosidase, beta A, lysosomal 1.23192
ARAF A-Raf proto-oncogene, serine/threonine kinase 1.2314
LSM4 LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) 1.14136
EXT1 exostosin glycosyltransferase 1 1.13881
UXS1 UDP-glucuronate decarboxylase 1 1.11837
SCARA3 scavenger receptor class A, member 3 1.07663
MIOX myo-inositol oxygenase 1.01833
EXOC6B exocyst complex component 6B 0.933601
LSG1 large 60S subunit nuclear export GTPase 1 0.881938
XYLT2 xylosyltransferase II 0.824959
GALP galanin-like peptide 0.772732
GLA galactosidase, alpha 0.767715
RPLP1 ribosomal protein, large, P1 0.740064
RBMS2 RNA binding motif, single stranded interacting protein 2 0.707482
GALE UDP-galactose-4-epimerase 0.598117
UCHL3 ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase) 0.571329
CYP51A1 cytochrome P450, family 51, subfamily A, polypeptide 1 0.569248
MEOX2 mesenchyme homeobox 2 0.564262
PCTP phosphatidylcholine transfer protein 0.54194
ATXN2 ataxin 2 0.501881
EBF1 early B-cell factor 1 0.485693
MGAT4C MGAT4 family, member C 0.485289
PTMS parathymosin 0.469203
MLLT1 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1 0.464798
GUSB glucuronidase, beta 0.462798
PEX1 peroxisomal biogenesis factor 1 0.461599
FAM195A family with sequence similarity 195, member A 0.461199
LYST lysosomal trafficking regulator 0.457208
CYP20A1 cytochrome P450, family 20, subfamily A, polypeptide 1 0.453621
ASNS asparagine synthetase (glutamine-hydrolyzing) 0.451233
AHCY adenosylhomocysteinase 0.430253
TP53INP1 tumor protein p53 inducible nuclear protein 1 0.397035
MPG N-methylpurine-DNA glycosylase 0.385051
MGAM maltase-glucoamylase 0.377354
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.356705
CA8 carbonic anhydrase VIII 0.356705
PYCR1 pyrroline-5-carboxylate reductase 1 0.355944
ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 0.346829
SPAG9 sperm associated antigen 9 0.338506
PIN1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 0.332095
CEL carboxyl ester lipase 0.325702
RTN4R reticulon 4 receptor 0.315212
ANXA6 annexin A6 0.286614
EIF2AK3 eukaryotic translation initiation factor 2-alpha kinase 3 0.274468
RHEB Ras homolog enriched in brain 0.25547
ATN1 atrophin 1 0.25438
LGALS7 lectin, galactoside-binding, soluble, 7 0.240276
MGP matrix Gla protein 0.21716
CSN2 casein beta 0.21646
TGM1 transglutaminase 1 0.202009
SERPINA4 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 4 0.182122