protein ubiquitination Gene Set

Dataset GO Biological Process Annotations 2025
Category structural or functional annotations
Type biological process
Description The process in which one or more ubiquitin groups are added to a protein. (Gene Ontology, GO_0016567)
External Link http://amigo.geneontology.org/amigo/term/GO:0016567
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Genes

370 genes participating in the protein ubiquitination biological process from the curated GO Biological Process Annotations 2025 dataset.

Symbol Name
ABCB11 ATP-binding cassette, sub-family B (MDR/TAP), member 11
AMBRA1 autophagy/beclin-1 regulator 1
AMFR autocrine motility factor receptor, E3 ubiquitin protein ligase
ANAPC11 anaphase promoting complex subunit 11
ANAPC16 anaphase promoting complex subunit 16
ANAPC7 anaphase promoting complex subunit 7
ANKRD9 ankyrin repeat domain 9
AREL1 apoptosis resistant E3 ubiquitin protein ligase 1
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1
ARIH2 ariadne RBR E3 ubiquitin protein ligase 2
ARRB1 arrestin, beta 1
ARRB2 arrestin, beta 2
ARRDC1 arrestin domain containing 1
ARRDC4 arrestin domain containing 4
ASB1 ankyrin repeat and SOCS box containing 1
ASB11 ankyrin repeat and SOCS box containing 11, E3 ubiquitin protein ligase
ASB12 ankyrin repeat and SOCS box containing 12
ASB2 ankyrin repeat and SOCS box containing 2
ASB4 ankyrin repeat and SOCS box containing 4
ASB5 ankyrin repeat and SOCS box containing 5
ASB9 ankyrin repeat and SOCS box containing 9
ATG3 autophagy related 3
BARD1 BRCA1 associated RING domain 1
BCL2 B-cell CLL/lymphoma 2
BFAR bifunctional apoptosis regulator
BIRC2 baculoviral IAP repeat containing 2
BIRC6 baculoviral IAP repeat containing 6
BIRC7 baculoviral IAP repeat containing 7
BLMH bleomycin hydrolase
BRCA1 breast cancer 1, early onset
BTRC beta-transducin repeat containing E3 ubiquitin protein ligase
C10ORF90 chromosome 10 open reading frame 90
C6ORF89 chromosome 6 open reading frame 89
CAND1 cullin-associated and neddylation-dissociated 1
CAND2 cullin-associated and neddylation-dissociated 2 (putative)
CBFB core-binding factor, beta subunit
CBL Cbl proto-oncogene, E3 ubiquitin protein ligase
CBLL1 Cbl proto-oncogene-like 1, E3 ubiquitin protein ligase
CBLL2 Cbl proto-oncogene like 2
CCAR1 cell division cycle and apoptosis regulator 1
CCNF cyclin F
CDC16 cell division cycle 16
CDC23 cell division cycle 23
CDC27 cell division cycle 27
CDC34 cell division cycle 34
CDKN2A cyclin-dependent kinase inhibitor 2A
CNOT4 CCR4-NOT transcription complex, subunit 4
CRBN cereblon
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa
CUL1 cullin 1
CUL2 cullin 2
CUL3 cullin 3
CUL4A cullin 4A
CUL4B cullin 4B
CUL5 cullin 5
CUL7 cullin 7
CUL9 cullin 9
DAW1 dynein assembly factor with WDR repeat domains 1
DCAF15 DDB1 and CUL4 associated factor 15
DDA1 DET1 and DDB1 associated 1
DDB1 damage-specific DNA binding protein 1, 127kDa
DDB2 damage-specific DNA binding protein 2, 48kDa
DET1 de-etiolated homolog 1 (Arabidopsis)
DTL denticleless E3 ubiquitin protein ligase homolog (Drosophila)
DTX1 deltex 1, E3 ubiquitin ligase
DTX2 deltex 2, E3 ubiquitin ligase
DTX3 deltex 3, E3 ubiquitin ligase
DTX3L deltex 3 like, E3 ubiquitin ligase
DTX4 deltex 4, E3 ubiquitin ligase
DZIP3 DAZ interacting zinc finger protein 3
EIPR1 EARP complex and GARP complex interacting protein 1
ELOC elongin C
ENC1 ectodermal-neural cortex 1 (with BTB domain)
ERCC8 excision repair cross-complementation group 8
FANCL Fanconi anemia, complementation group L
FAU Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed
FBH1 F-box DNA helicase 1
FBXL15 F-box and leucine-rich repeat protein 15
FBXL17 F-box and leucine-rich repeat protein 17
FBXL2 F-box and leucine-rich repeat protein 2
FBXL3 F-box and leucine-rich repeat protein 3
FBXL5 F-box and leucine-rich repeat protein 5
FBXL7 F-box and leucine-rich repeat protein 7
FBXO10 F-box protein 10
FBXO11 F-box protein 11
FBXO2 F-box protein 2
FBXO22 F-box protein 22
FBXO24 F-box protein 24
FBXO25 F-box protein 25
FBXO28 F-box protein 28
FBXO32 F-box protein 32
FBXO4 F-box protein 4
FBXO45 F-box protein 45
FBXO7 F-box protein 7
FBXO9 F-box protein 9
FBXW11 F-box and WD repeat domain containing 11
FBXW5 F-box and WD repeat domain containing 5
FBXW7 F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase
FBXW8 F-box and WD repeat domain containing 8
GAN gigaxonin
HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1
HERC2 HECT and RLD domain containing E3 ubiquitin protein ligase 2
HERC3 HECT and RLD domain containing E3 ubiquitin protein ligase 3
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4
HERC5 HECT and RLD domain containing E3 ubiquitin protein ligase 5
HERC6 HECT and RLD domain containing E3 ubiquitin protein ligase family member 6
HLTF helicase-like transcription factor
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase
IRF2BP1 interferon regulatory factor 2 binding protein 1
ISG15 ISG15 ubiquitin-like modifier
ITCH itchy E3 ubiquitin protein ligase
KBTBD8 kelch repeat and BTB (POZ) domain containing 8
KCTD10 potassium channel tetramerization domain containing 10
KCTD13 potassium channel tetramerization domain containing 13
KEAP1 kelch-like ECH-associated protein 1
KLHL12 kelch-like family member 12
KLHL13 kelch-like family member 13
KLHL18 kelch-like family member 18
KLHL2 kelch-like family member 2
KLHL20 kelch-like family member 20
KLHL21 kelch-like family member 21
KLHL22 kelch-like family member 22
KLHL24 kelch-like family member 24
KLHL25 kelch-like family member 25
KLHL3 kelch-like family member 3
KLHL41 kelch-like family member 41
KLHL42 kelch-like family member 42
KLHL7 kelch-like family member 7
KLHL8 kelch-like family member 8
KLHL9 kelch-like family member 9
LMO7 LIM domain 7
LNPEP leucyl/cystinyl aminopeptidase
LOC122513141 ring finger protein-like
LRSAM1 leucine rich repeat and sterile alpha motif containing 1
LZTR1 leucine-zipper-like transcription regulator 1
MAGEF1 melanoma antigen family F1
MARCHF1 membrane associated ring-CH-type finger 1
MARCHF2 membrane associated ring-CH-type finger 2
MARCHF3 membrane associated ring-CH-type finger 3
MARCHF5 membrane associated ring-CH-type finger 5
MARCHF6 membrane associated ring-CH-type finger 6
MARCHF7 membrane associated ring-CH-type finger 7
MARCHF8 membrane associated ring-CH-type finger 8
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase
MDM4 MDM4, p53 regulator
MGRN1 mahogunin ring finger 1, E3 ubiquitin protein ligase
MIB1 mindbomb E3 ubiquitin protein ligase 1
MIB2 mindbomb E3 ubiquitin protein ligase 2
MKRN1 makorin ring finger protein 1
MKRN2 makorin ring finger protein 2
MKRN3 makorin ring finger protein 3
MMACHC methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria
MSL2 male-specific lethal 2 homolog (Drosophila)
MUL1 mitochondrial E3 ubiquitin protein ligase 1
MYCBP2 MYC binding protein 2, E3 ubiquitin protein ligase
MYLIP myosin regulatory light chain interacting protein
NEDD4 neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase
NEDD8 neural precursor cell expressed, developmentally down-regulated 8
NEURL1 neuralized E3 ubiquitin protein ligase 1
NEUROD2 neuronal differentiation 2
NFE2L2 nuclear factor, erythroid 2-like 2
NFX1 nuclear transcription factor, X-box binding 1
NHLRC1 NHL repeat containing E3 ubiquitin protein ligase 1
NHLRC3 NHL repeat containing 3
NPEPPS aminopeptidase puromycin sensitive
NUB1 negative regulator of ubiquitin-like proteins 1
OBI1 ORC ubiquitin ligase 1
OS9 osteosarcoma amplified 9, endoplasmic reticulum lectin
OTULIN OTU deubiquitinase with linear linkage specificity
PCMTD1 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
PCNP PEST proteolytic signal containing nuclear protein
PDZRN3 PDZ domain containing ring finger 3
PELI2 pellino E3 ubiquitin protein ligase family member 2
PEX10 peroxisomal biogenesis factor 10
PEX12 peroxisomal biogenesis factor 12
PEX2 peroxisomal biogenesis factor 2
PINK1 PTEN induced putative kinase 1
PJA1 praja ring finger 1, E3 ubiquitin protein ligase
PJA2 praja ring finger 2, E3 ubiquitin protein ligase
PLK1 polo-like kinase 1
PPIL2 peptidylprolyl isomerase (cyclophilin)-like 2
PRAME preferentially expressed antigen in melanoma
PRKN parkin RBR E3 ubiquitin protein ligase
PRPF19 pre-mRNA processing factor 19
RACK1 receptor for activated C kinase 1
RAD18 RAD18 E3 ubiquitin protein ligase
RAG1 recombination activating gene 1
RBBP6 retinoblastoma binding protein 6
RBCK1 RanBP-type and C3HC4-type zinc finger containing 1
RBX1 ring-box 1, E3 ubiquitin protein ligase
RC3H1 ring finger and CCCH-type domains 1
RC3H2 ring finger and CCCH-type domains 2
RCHY1 ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase
RFWD3 ring finger and WD repeat domain 3
RLIM ring finger protein, LIM domain interacting
RMND5A required for meiotic nuclear division 5 homolog A (S. cerevisiae)
RNF10 ring finger protein 10
RNF103 ring finger protein 103
RNF11 ring finger protein 11
RNF111 ring finger protein 111
RNF112 ring finger protein 112
RNF113A ring finger protein 113A
RNF114 ring finger protein 114
RNF115 ring finger protein 115
RNF122 ring finger protein 122
RNF123 ring finger protein 123
RNF125 ring finger protein 125, E3 ubiquitin protein ligase
RNF126 ring finger protein 126
RNF13 ring finger protein 13
RNF135 ring finger protein 135
RNF138 ring finger protein 138, E3 ubiquitin protein ligase
RNF139 ring finger protein 139
RNF14 ring finger protein 14
RNF141 ring finger protein 141
RNF144A ring finger protein 144A
RNF146 ring finger protein 146
RNF152 ring finger protein 152
RNF157 ring finger protein 157
RNF166 ring finger protein 166
RNF167 ring finger protein 167
RNF168 ring finger protein 168, E3 ubiquitin protein ligase
RNF181 ring finger protein 181
RNF182 ring finger protein 182
RNF183 ring finger protein 183
RNF185 ring finger protein 185
RNF186 ring finger protein 186
RNF187 ring finger protein 187
RNF19B ring finger protein 19B
RNF20 ring finger protein 20, E3 ubiquitin protein ligase
RNF208 ring finger protein 208
RNF212B ring finger protein 212B
RNF213 ring finger protein 213
RNF220 ring finger protein 220
RNF223 ring finger protein 223
RNF225 ring finger protein 225
RNF227 ring finger protein 227
RNF228 ring finger protein 228
RNF25 ring finger protein 25
RNF26 ring finger protein 26
RNF31 ring finger protein 31
RNF34 ring finger protein 34, E3 ubiquitin protein ligase
RNF38 ring finger protein 38
RNF4 ring finger protein 4
RNF41 ring finger protein 41, E3 ubiquitin protein ligase
RNF43 ring finger protein 43
RNF44 ring finger protein 44
RNF6 ring finger protein (C3H2C3 type) 6
RNF7 ring finger protein 7
RNF8 ring finger protein 8, E3 ubiquitin protein ligase
RNFT1 ring finger protein, transmembrane 1
RPGR retinitis pigmentosa GTPase regulator
RPS27A ribosomal protein S27a
RUSC1 RUN and SH3 domain containing 1
SASH1 SAM and SH3 domain containing 1
SDE2 SDE2 telomere maintenance homolog (S. pombe)
SH3RF1 SH3 domain containing ring finger 1
SH3RF2 SH3 domain containing ring finger 2
SH3RF3 SH3 domain containing ring finger 3
SHPRH SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase
SIRT1 sirtuin 1
SKP1 S-phase kinase-associated protein 1
SMURF1 SMAD specific E3 ubiquitin protein ligase 1
SPOP speckle-type POZ protein
SPSB1 splA/ryanodine receptor domain and SOCS box containing 1
SPSB2 splA/ryanodine receptor domain and SOCS box containing 2
SPSB4 splA/ryanodine receptor domain and SOCS box containing 4
STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase
SYVN1 synovial apoptosis inhibitor 1, synoviolin
TAF1 TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa
TANK TRAF family member-associated NFKB activator
THOP1 thimet oligopeptidase 1
TMEM129 transmembrane protein 129, E3 ubiquitin protein ligase
TNFAIP1 tumor necrosis factor, alpha-induced protein 1 (endothelial)
TNKS tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
TNKS2 tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2
TOPORS topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase
TPP2 tripeptidyl peptidase II
TRAF6 TNF receptor-associated factor 6, E3 ubiquitin protein ligase
TRAF7 TNF receptor-associated factor 7, E3 ubiquitin protein ligase
TRAIP TRAF interacting protein
TRIM11 tripartite motif containing 11
TRIM13 tripartite motif containing 13
TRIM17 tripartite motif containing 17
TRIM2 tripartite motif containing 2
TRIM21 tripartite motif containing 21
TRIM23 tripartite motif containing 23
TRIM24 tripartite motif containing 24
TRIM25 tripartite motif containing 25
TRIM3 tripartite motif containing 3
TRIM32 tripartite motif containing 32
TRIM33 tripartite motif containing 33
TRIM37 tripartite motif containing 37
TRIM41 tripartite motif containing 41
TRIM47 tripartite motif containing 47
TRIM52 tripartite motif containing 52
TRIM56 tripartite motif containing 56
TRIM68 tripartite motif containing 68
TRIM71 tripartite motif containing 71, E3 ubiquitin protein ligase
TRIP12 thyroid hormone receptor interactor 12
TRPC4AP transient receptor potential cation channel, subfamily C, member 4 associated protein
UBA1 ubiquitin-like modifier activating enzyme 1
UBA52 ubiquitin A-52 residue ribosomal protein fusion product 1
UBA6 ubiquitin-like modifier activating enzyme 6
UBAC1 UBA domain containing 1
UBB ubiquitin B
UBC ubiquitin C
UBD ubiquitin D
UBE2A ubiquitin-conjugating enzyme E2A
UBE2B ubiquitin-conjugating enzyme E2B
UBE2C ubiquitin-conjugating enzyme E2C
UBE2D1 ubiquitin-conjugating enzyme E2D 1
UBE2D2 ubiquitin-conjugating enzyme E2D 2
UBE2D3 ubiquitin-conjugating enzyme E2D 3
UBE2D4 ubiquitin-conjugating enzyme E2D 4 (putative)
UBE2E1 ubiquitin-conjugating enzyme E2E 1
UBE2E2 ubiquitin-conjugating enzyme E2E 2
UBE2E3 ubiquitin-conjugating enzyme E2E 3
UBE2G1 ubiquitin-conjugating enzyme E2G 1
UBE2G2 ubiquitin-conjugating enzyme E2G 2
UBE2H ubiquitin-conjugating enzyme E2H
UBE2J1 ubiquitin-conjugating enzyme E2, J1
UBE2J2 ubiquitin-conjugating enzyme E2, J2
UBE2K ubiquitin-conjugating enzyme E2K
UBE2L3 ubiquitin-conjugating enzyme E2L 3
UBE2L6 ubiquitin-conjugating enzyme E2L 6
UBE2N ubiquitin-conjugating enzyme E2N
UBE2NL ubiquitin-conjugating enzyme E2N-like (gene/pseudogene)
UBE2O ubiquitin-conjugating enzyme E2O
UBE2Q1 ubiquitin-conjugating enzyme E2Q family member 1
UBE2QL1 ubiquitin-conjugating enzyme E2Q family-like 1
UBE2R2 ubiquitin-conjugating enzyme E2R 2
UBE2S ubiquitin-conjugating enzyme E2S
UBE2T ubiquitin-conjugating enzyme E2T
UBE2U ubiquitin-conjugating enzyme E2U (putative)
UBE2V1 ubiquitin-conjugating enzyme E2 variant 1
UBE2V2 ubiquitin-conjugating enzyme E2 variant 2
UBE2W ubiquitin-conjugating enzyme E2W (putative)
UBE3A ubiquitin protein ligase E3A
UBE3B ubiquitin protein ligase E3B
UBE3C ubiquitin protein ligase E3C
UBE3D ubiquitin protein ligase E3D
UBE4A ubiquitination factor E4A
UBE4B ubiquitination factor E4B
UBOX5 U-box domain containing 5
UBR1 ubiquitin protein ligase E3 component n-recognin 1
UBR2 ubiquitin protein ligase E3 component n-recognin 2
UBR3 ubiquitin protein ligase E3 component n-recognin 3 (putative)
UBR5 ubiquitin protein ligase E3 component n-recognin 5
UCHL3 ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)
UHRF1 ubiquitin-like with PHD and ring finger domains 1
UHRF2 ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase
USP5 ubiquitin specific peptidase 5 (isopeptidase T)
USP7 ubiquitin specific peptidase 7 (herpes virus-associated)
USP9X ubiquitin specific peptidase 9, X-linked
UVSSA UV-stimulated scaffold protein A
VCP valosin containing protein
VCPIP1 valosin containing protein (p97)/p47 complex interacting protein 1
VHL von Hippel-Lindau tumor suppressor, E3 ubiquitin protein ligase
VPS11 vacuolar protein sorting 11 homolog (S. cerevisiae)
VPS18 vacuolar protein sorting 18 homolog (S. cerevisiae)
WSB1 WD repeat and SOCS box containing 1
WSB2 WD repeat and SOCS box containing 2
WWP1 WW domain containing E3 ubiquitin protein ligase 1
WWP2 WW domain containing E3 ubiquitin protein ligase 2
ZC4H2 zinc finger, C4H2 domain containing
ZNF598 zinc finger protein 598
ZNF738 zinc finger protein 738
ZNRF3 zinc and ring finger 3
ZSWIM8 zinc finger, SWIM-type containing 8