provirus Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description The name given to a viral genome after it has been integrated into the host genome; particularly applies to retroviruses and is a required part of the retroviral replication cycle. (Gene Ontology, GO_0019038)
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Genes

312 proteins co-occuring with the provirus cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
CD4 CD4 molecule 2.91329
CCR5 chemokine (C-C motif) receptor 5 (gene/pseudogene) 1.80306
APOBEC3G apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G 1.65152
ERVW-1 endogenous retrovirus group W, member 1 1.60885
HBZ hemoglobin, zeta 1.53726
PIM2 Pim-2 proto-oncogene, serine/threonine kinase 1.535
MYC v-myc avian myelocytomatosis viral oncogene homolog 1.47231
PIM1 Pim-1 proto-oncogene, serine/threonine kinase 1.4576
MMP11 matrix metallopeptidase 11 1.42542
PIM3 Pim-3 proto-oncogene, serine/threonine kinase 1.38128
TAT tyrosine aminotransferase 1.38073
IL2 interleukin 2 1.28569
ERV3-1 endogenous retrovirus group 3, member 1 1.26815
ACOT1 acyl-CoA thioesterase 1 1.25127
TMC6 transmembrane channel-like 6 1.22776
CLEC10A C-type lectin domain family 10, member A 1.22101
CENPV centromere protein V 1.21686
TMEM154 transmembrane protein 154 1.10715
CD34 CD34 molecule 1.06094
MYB v-myb avian myeloblastosis viral oncogene homolog 1.05791
CD7 CD7 molecule 0.981959
CRLF1 cytokine receptor-like factor 1 0.97953
SRC SRC proto-oncogene, non-receptor tyrosine kinase 0.977104
GFI1 growth factor independent 1 transcription repressor 0.941636
HOXB8 homeobox B8 0.924197
APOBEC3F apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F 0.881477
PSIP1 PC4 and SFRS1 interacting protein 1 0.881016
ERVFRD-1 endogenous retrovirus group FRD, member 1 0.868586
CD5 CD5 molecule 0.865367
INTS1 integrator complex subunit 1 0.863528
IFNA1 interferon, alpha 1 0.842859
CCNT1 cyclin T1 0.840105
IL3 interleukin 3 0.826336
ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase 0.8245
BST2 bone marrow stromal cell antigen 2 0.806148
FRAT1 frequently rearranged in advanced T-cell lymphomas 1 0.802021
APOBEC3B apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B 0.791022
SERPINH1 serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1) 0.788275
APOBEC3H apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H 0.785529
HLA-A major histocompatibility complex, class I, A 0.765438
CSF1R colony stimulating factor 1 receptor 0.763162
AHI1 Abelson helper integration site 1 0.747285
DUT deoxyuridine triphosphatase 0.735115
RNASEL ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent) 0.721688
CDA cytidine deaminase 0.721242
EVI5 ecotropic viral integration site 5 0.718125
TNF tumor necrosis factor 0.715458
HMP19 HMP19 protein 0.713238
IL2RA interleukin 2 receptor, alpha 0.708808
SPI1 Spi-1 proto-oncogene 0.700423
CARTPT CART prepropeptide 0.688576
HLA-C major histocompatibility complex, class I, C 0.685954
TRIM28 tripartite motif containing 28 0.672026
CNTN2 contactin 2 (axonal) 0.6638
ADA adenosine deaminase 0.65345
APOBEC3C apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C 0.646145
HNRNPM heterogeneous nuclear ribonucleoprotein M 0.641001
SRSF1 serine/arginine-rich splicing factor 1 0.634586
HDAC9 histone deacetylase 9 0.632024
HOXD9 homeobox D9 0.629039
APOBEC3D apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D 0.627761
MNX1 motor neuron and pancreas homeobox 1 0.623079
CAMKV CaM kinase-like vesicle-associated 0.620529
NFIB nuclear factor I/B 0.614165
PDGFB platelet-derived growth factor beta polypeptide 0.609932
FBXW4 F-box and WD repeat domain containing 4 0.609086
NFIA nuclear factor I/A 0.606128
IL16 interleukin 16 0.606128
CDK9 cyclin-dependent kinase 9 0.602752
NFIC nuclear factor I/C (CCAAT-binding transcription factor) 0.601909
TNPO3 transportin 3 0.59896
NFIX nuclear factor I/X (CCAAT-binding transcription factor) 0.596855
GLB1 galactosidase, beta 1 0.594753
IL9R interleukin 9 receptor 0.588875
BTK Bruton agammaglobulinemia tyrosine kinase 0.585523
FOXG1 forkhead box G1 0.583849
ZKSCAN8 zinc finger with KRAB and SCAN domains 8 0.582594
ZRSR1 zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 1 0.582594
LTV1 LTV1 ribosome biogenesis factor 0.582594
SMIM7 small integral membrane protein 7 0.582594
FGF4 fibroblast growth factor 4 0.575078
FES FES proto-oncogene, tyrosine kinase 0.573828
HOXA9 homeobox A9 0.572994
ISG20 interferon stimulated exonuclease gene 20kDa 0.567585
TRIM5 tripartite motif containing 5 0.565923
SOX4 SRY (sex determining region Y)-box 4 0.562187
DNMT3A DNA (cytosine-5-)-methyltransferase 3 alpha 0.560114
FPR1 formyl peptide receptor 1 0.558871
DHFR dihydrofolate reductase 0.548122
CD79A CD79a molecule, immunoglobulin-associated alpha 0.540706
PSMD7 proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 0.537416
PPIA peptidylprolyl isomerase A (cyclophilin A) 0.536183
SETDB1 SET domain, bifurcated 1 0.535772
WNT10B wingless-type MMTV integration site family, member 10B 0.529618
CCL3 chemokine (C-C motif) ligand 3 0.529618
ATPAF1 ATP synthase mitochondrial F1 complex assembly factor 1 0.528798
KNTC1 kinetochore associated 1 0.523067
FOXP3 forkhead box P3 0.521841
BRD3 bromodomain containing 3 0.521023
TIA1 TIA1 cytotoxic granule-associated RNA binding protein 0.516532
XPR1 xenotropic and polytropic retrovirus receptor 1 0.514085
ACTG1 actin gamma 1 0.508383
PBX1 pre-B-cell leukemia homeobox 1 0.50635
SAMHD1 SAM domain and HD domain 1 0.505131
EVI2A ecotropic viral integration site 2A 0.503912
CSF2 colony stimulating factor 2 (granulocyte-macrophage) 0.499853
IDH1 isocitrate dehydrogenase 1 (NADP+), soluble 0.498636
IGHM immunoglobulin heavy constant mu 0.4958
IL7 interleukin 7 0.493775
NPTN neuroplastin 0.492157
UNCX UNC homeobox 0.490944
IFNL3 interferon, lambda 3 0.490944
CD38 CD38 molecule 0.490135
CREB1 cAMP responsive element binding protein 1 0.490135
ZSCAN16 zinc finger and SCAN domain containing 16 0.486096
TOX4 TOX high mobility group box family member 4 0.481258
FOS FBJ murine osteosarcoma viral oncogene homolog 0.479245
IGLV6-57 immunoglobulin lambda variable 6-57 0.479245
JDP2 Jun dimerization protein 2 0.47844
CDYL2 chromodomain protein, Y-like 2 0.476429
ISG15 ISG15 ubiquitin-like modifier 0.470807
DEFB127 defensin, beta 127 0.470406
LCK LCK proto-oncogene, Src family tyrosine kinase 0.462798
VBP1 von Hippel-Lindau binding protein 1 0.462398
KRAS Kirsten rat sarcoma viral oncogene homolog 0.460401
HOXA6 homeobox A6 0.458404
BCL11A B-cell CLL/lymphoma 11A (zinc finger protein) 0.455214
EPO erythropoietin 0.448451
FLT3 fms-related tyrosine kinase 3 0.447656
HOXB4 homeobox B4 0.445672
CCL3L1 chemokine (C-C motif) ligand 3-like 1 0.443689
CCL22 chemokine (C-C motif) ligand 22 0.440916
SPTA1 spectrin, alpha, erythrocytic 1 0.440916
MCM8 minichromosome maintenance complex component 8 0.436565
PGK1 phosphoglycerate kinase 1 0.431435
CD69 CD69 molecule 0.427891
DEFB106B defensin, beta 106B 0.427891
LGSN lengsin, lens protein with glutamine synthetase domain 0.425531
CD19 CD19 molecule 0.418468
NPM3 nucleophosmin/nucleoplasmin 3 0.417294
IL2RG interleukin 2 receptor, gamma 0.41612
SYTL3 synaptotagmin-like 3 0.414555
DNMT3B DNA (cytosine-5-)-methyltransferase 3 beta 0.414164
ACP1 acid phosphatase 1, soluble 0.41221
TP53 tumor protein p53 0.40714
EPOR erythropoietin receptor 0.40675
MGMT O-6-methylguanine-DNA methyltransferase 0.406361
HLA-B major histocompatibility complex, class I, B 0.404026
HLA-E major histocompatibility complex, class I, E 0.403248
NCAM1 neural cell adhesion molecule 1 0.40247
HRAS Harvey rat sarcoma viral oncogene homolog 0.401304
TAF8 TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa 0.400527
NOTCH1 notch 1 0.400527
IL4 interleukin 4 0.400139
ACTB actin, beta 0.396648
GIN1 gypsy retrotransposon integrase 1 0.390841
RSPO1 R-spondin 1 0.385822
AKTIP AKT interacting protein 0.383509
REV3L REV3-like, polymerase (DNA directed), zeta, catalytic subunit 0.382739
TLX1 T-cell leukemia homeobox 1 0.380429
BACH2 BTB and CNC homology 1, basic leucine zipper transcription factor 2 0.380429
ANOS1 anosmin 1 0.380045
ZFP91 ZFP91 zinc finger protein 0.378122
TMEM11 transmembrane protein 11 0.375818
MOV10 Mov10 RISC complex RNA helicase 0.371982
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 0.355944
YY1 YY1 transcription factor 0.347967
HDAC1 histone deacetylase 1 0.347967
KITLG KIT ligand 0.347208
DBT dihydrolipoamide branched chain transacylase E2 0.343799
FUK fucokinase 0.338128
SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 0.336619
GBA glucosidase, beta, acid 0.333979
NF1 neurofibromin 1 0.333602
SLC1A4 solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 0.333602
CXCR4 chemokine (C-X-C motif) receptor 4 0.333602
ZNF165 zinc finger protein 165 0.332848
EIF3E eukaryotic translation initiation factor 3, subunit E 0.330213
PAK7 p21 protein (Cdc42/Rac)-activated kinase 7 0.330213
IDH2 isocitrate dehydrogenase 2 (NADP+), mitochondrial 0.327956
NOG noggin 0.325702
TRIB2 tribbles pseudokinase 2 0.31783
FAM120B family with sequence similarity 120B 0.315212
CREBBP CREB binding protein 0.315212
PTPRC protein tyrosine phosphatase, receptor type, C 0.315212
TMEM132D transmembrane protein 132D 0.314839
CD244 CD244 molecule, natural killer cell receptor 2B4 0.310732
PDE6D phosphodiesterase 6D, cGMP-specific, rod, delta 0.308122
THY1 Thy-1 cell surface antigen 0.30626
RUNX3 runt-related transcription factor 3 0.303283
FGF1 fibroblast growth factor 1 (acidic) 0.296972
GBP3 guanylate binding protein 3 0.296972
TNFRSF8 tumor necrosis factor receptor superfamily, member 8 0.29586
APOBEC3A apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A 0.294378
FGF3 fibroblast growth factor 3 0.293267
TLL2 tolloid-like 2 0.292157
KLF4 Kruppel-like factor 4 (gut) 0.289938
ZNF91 zinc finger protein 91 0.287721
SP1 Sp1 transcription factor 0.281085
ZKSCAN7 zinc finger with KRAB and SCAN domains 7 0.273367
ETS1 v-ets avian erythroblastosis virus E26 oncogene homolog 1 0.272633
ATL2 atlastin GTPase 2 0.271533
HECW1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 0.271533
MEX3D mex-3 RNA binding family member D 0.271167
CNTN3 contactin 3 (plasmacytoma associated) 0.269701
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.268237
PDE1B phosphodiesterase 1B, calmodulin-dependent 0.264581
REL v-rel avian reticuloendotheliosis viral oncogene homolog 0.262755
B2M beta-2-microglobulin 0.260202
RSPO2 R-spondin 2 0.259473
RASGRP1 RAS guanyl releasing protein 1 (calcium and DAG-regulated) 0.257289
CCND2 cyclin D2 0.255107
TRAC T cell receptor alpha constant 0.253291
NRAS neuroblastoma RAS viral (v-ras) oncogene homolog 0.253291
NOTCH4 notch 4 0.252927
OAS1 2'-5'-oligoadenylate synthetase 1, 40/46kDa 0.252564
CD28 CD28 molecule 0.251839
IDUA iduronidase, alpha-L- 0.251114
PRF1 perforin 1 (pore forming protein) 0.247492
KLF3 Kruppel-like factor 3 (basic) 0.246769
IRF8 interferon regulatory factor 8 0.244962
FOXL1 forkhead box L1 0.242076
B3GAT1 beta-1,3-glucuronyltransferase 1 0.241716
SEMG1 semenogelin I 0.241716
GZMB granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1) 0.241356
TMEM131 transmembrane protein 131 0.239557
CD27 CD27 molecule 0.239197
TXNDC5 thioredoxin domain containing 5 (endoplasmic reticulum) 0.239197
NSMF NMDA receptor synaptonuclear signaling and neuronal migration factor 0.239197
DDN dendrin 0.236683
PIDD1 p53-induced death domain protein 1 0.236324
NUP98 nucleoporin 98kDa 0.235607
CDK8 cyclin-dependent kinase 8 0.234174
JUND jun D proto-oncogene 0.233817
NAP1L2 nucleosome assembly protein 1-like 2 0.232386
BRD4 bromodomain containing 4 0.230245
XPO1 exportin 1 0.227752
SLC1A5 solute carrier family 1 (neutral amino acid transporter), member 5 0.225267
USF2 upstream transcription factor 2, c-fos interacting 0.224913
CD68 CD68 molecule 0.223497
CASS4 Cas scaffolding protein family member 4 0.222436
PLVAP plasmalemma vesicle associated protein 0.220673
TACSTD2 tumor-associated calcium signal transducer 2 0.219265
CACNA2D4 calcium channel, voltage-dependent, alpha 2/delta subunit 4 0.218914
USP11 ubiquitin specific peptidase 11 0.21646
FGR FGR proto-oncogene, Src family tyrosine kinase 0.215761
CDYL chromodomain protein, Y-like 0.214366
SPTB spectrin, beta, erythrocytic 0.214017
ZNF521 zinc finger protein 521 0.21228
MECOM MDS1 and EVI1 complex locus 0.21124
MAGEA3 melanoma antigen family A3 0.210203
SNRNP27 small nuclear ribonucleoprotein 27kDa (U4/U6.U5) 0.209858
GPX8 glutathione peroxidase 8 (putative) 0.209513
HBG2 hemoglobin, gamma G 0.208481
CA3 carbonic anhydrase III 0.207794
ITGAL integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide) 0.206423
PDE8A phosphodiesterase 8A 0.205399
IGF2BP1 insulin-like growth factor 2 mRNA binding protein 1 0.198991
PTPN2 protein tyrosine phosphatase, non-receptor type 2 0.198325
HBB hemoglobin, beta 0.198325
MCF2 MCF.2 cell line derived transforming sequence 0.197662
BCL11B B-cell CLL/lymphoma 11B (zinc finger protein) 0.196999
SPATA21 spermatogenesis associated 21 0.193719
GCOM1 GRINL1A complex locus 1 0.192423
GDF3 growth differentiation factor 3 0.191135
PRDM14 PR domain containing 14 0.190814
ICOS inducible T-cell co-stimulator 0.190495
SH2D1A SH2 domain containing 1A 0.190495
CXCL12 chemokine (C-X-C motif) ligand 12 0.18796
MYCL v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog 0.187646
AKAP7 A kinase (PRKA) anchor protein 7 0.187333
TIAM1 T-cell lymphoma invasion and metastasis 1 0.186708
TOP1 topoisomerase (DNA) I 0.185777
NFKB2 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) 0.185777
DHX9 DEAH (Asp-Glu-Ala-His) box helicase 9 0.184853
TFCP2 transcription factor CP2 0.184547
CR1 complement component (3b/4b) receptor 1 (Knops blood group) 0.183328
NADK NAD kinase 0.182422
FLT1 fms-related tyrosine kinase 1 0.180045
CXCL10 chemokine (C-X-C motif) ligand 10 0.177439
RASGRP2 RAS guanyl releasing protein 2 (calcium and DAG-regulated) 0.177154
PDPN podoplanin 0.17687
IRF3 interferon regulatory factor 3 0.17687
KCNH6 potassium channel, voltage gated eag related subfamily H, member 6 0.176305
CAND2 cullin-associated and neddylation-dissociated 2 (putative) 0.176305
JUN jun proto-oncogene 0.173814
CCR3 chemokine (C-C motif) receptor 3 0.173814
ADAR adenosine deaminase, RNA-specific 0.173003
WNT10A wingless-type MMTV integration site family, member 10A 0.173003
EEF1A1P6 eukaryotic translation elongation factor 1 alpha 1 pseudogene 6 0.173003
PCGF2 polycomb group ring finger 2 0.172201
CDKN2B cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4) 0.171149
MEIS1 Meis homeobox 1 0.170371
PXT1 peroxisomal, testis specific 1 0.16935
NT5C 5', 3'-nucleotidase, cytosolic 0.168101
DPPA4 developmental pluripotency associated 4 0.167856
SLC15A3 solute carrier family 15 (oligopeptide transporter), member 3 0.166405
BMI1 BMI1 proto-oncogene, polycomb ring finger 0.166405
TMEM38A transmembrane protein 38A 0.165463
REV1 REV1, polymerase (DNA directed) 0.165231
DEFA1B defensin, alpha 1B 0.165231
GTF2I general transcription factor IIi 0.165
GRSF1 G-rich RNA sequence binding factor 1 0.161275
FASLG Fas ligand (TNF superfamily, member 6) 0.161275
SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 0.159658
ALB albumin 0.158882
ZHX2 zinc fingers and homeoboxes 2 0.158882
TBP TATA box binding protein 0.158692
HTN3 histatin 3 0.158692
UBE2J1 ubiquitin-conjugating enzyme E2, J1 0.158315
DEFA1 defensin, alpha 1 0.157397
CPZ carboxypeptidase Z 0.157397