pseudopodium Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A temporary cytoplasmic extrusion by means of which an ameba or other ameboid organism or cell moves about or engulfs food. (BRENDA Tissue and Enzyme Source Ontology, BTO_0002610)
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Genes

181 proteins co-occuring with the pseudopodium cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
MYO1B myosin IB 1.1296
ITGA2B integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41) 1.04833
MSH6 mutS homolog 6 1.03829
FN1 fibronectin 1 1.00399
RAC1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) 0.925135
AKT1 v-akt murine thymoma viral oncogene homolog 1 0.922791
RAC3 ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3) 0.909251
TG thyroglobulin 0.841482
CDC42 cell division cycle 42 0.822206
BAIAP2L2 BAI1-associated protein 2-like 2 0.78004
EZR ezrin 0.759524
BNIP2 BCL2/adenovirus E1B 19kDa interacting protein 2 0.742318
CYFIP2 cytoplasmic FMR1 interacting protein 2 0.726152
VNN2 vanin 2 0.674196
PTEN phosphatase and tensin homolog 0.648721
PLEK pleckstrin 0.647003
F2RL1 coagulation factor II (thrombin) receptor-like 1 0.632878
ICAM1 intercellular adhesion molecule 1 0.632451
VCL vinculin 0.626909
WAS Wiskott-Aldrich syndrome 0.608663
SELL selectin L 0.601066
ITGAM integrin, alpha M (complement component 3 receptor 3 subunit) 0.593912
RAB25 RAB25, member RAS oncogene family 0.582594
ACTG1 actin gamma 1 0.574662
C5AR1 complement component 5a receptor 1 0.558042
SELP selectin P (granule membrane protein 140kDa, antigen CD62) 0.548535
ALB albumin 0.544411
KANK2 KN motif and ankyrin repeat domains 2 0.537827
RAB11FIP1 RAB11 family interacting protein 1 (class I) 0.531668
DNM2 dynamin 2 0.525113
MSN moesin 0.509604
CDH1 cadherin 1, type 1, E-cadherin (epithelial) 0.50879
DOCK9 dedicator of cytokinesis 9 0.504318
MYO1E myosin IE 0.503506
MYO1C myosin IC 0.496205
CD44 CD44 molecule (Indian blood group) 0.487307
VWF von Willebrand factor 0.486904
ACSM2A acyl-CoA synthetase medium-chain family member 2A 0.480855
ACPP acid phosphatase, prostate 0.474018
TIAM1 T-cell lymphoma invasion and metastasis 1 0.473617
HGF hepatocyte growth factor (hepapoietin A; scatter factor) 0.466399
GSN gelsolin 0.465198
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.462798
MYO1A myosin IA 0.460401
PFN2 profilin 2 0.457208
CXCL8 chemokine (C-X-C motif) ligand 8 0.452427
GMFG glia maturation factor, gamma 0.446465
PFN1 profilin 1 0.43538
CXCL12 chemokine (C-X-C motif) ligand 12 0.432618
SRC SRC proto-oncogene, non-receptor tyrosine kinase 0.430647
VEGFB vascular endothelial growth factor B 0.429072
ACTB actin, beta 0.425924
MAFB v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B 0.425924
PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 0.424745
CCL21 chemokine (C-C motif) ligand 21 0.422389
DOCK1 dedicator of cytokinesis 1 0.417294
CSF2 colony stimulating factor 2 (granulocyte-macrophage) 0.415337
DAPK2 death-associated protein kinase 2 0.411039
FMN1 formin 1 0.405582
PFN4 profilin family, member 4 0.394323
CDC42EP5 CDC42 effector protein (Rho GTPase binding) 5 0.385436
HLA-DPA1 major histocompatibility complex, class II, DP alpha 1 0.382354
MYLK myosin light chain kinase 0.377738
ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 0.372366
MPO myeloperoxidase 0.371599
AFF2 AF4/FMR2 family, member 2 0.366623
RDX radixin 0.363567
MMP9 matrix metallopeptidase 9 0.360896
THPO thrombopoietin 0.35899
CD63 CD63 molecule 0.357847
MYLK3 myosin light chain kinase 3 0.347967
FYB FYN binding protein 0.33511
VCAM1 vascular cell adhesion molecule 1 0.331342
ACCS 1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional) 0.329837
GREM2 gremlin 2, DAN family BMP antagonist 0.329084
RLN2 relaxin 2 0.327581
PPBP pro-platelet basic protein (chemokine (C-X-C motif) ligand 7) 0.323075
CNN2 calponin 2 0.320826
PDE4D phosphodiesterase 4D, cAMP-specific 0.320077
RASGRP2 RAS guanyl releasing protein 2 (calcium and DAG-regulated) 0.318579
SELE selectin E 0.314839
PLCE1 phospholipase C, epsilon 1 0.314839
ANXA2 annexin A2 0.312971
FTL ferritin, light polypeptide 0.310732
CD4 CD4 molecule 0.310358
DOCK7 dedicator of cytokinesis 7 0.30924
FTH1 ferritin, heavy polypeptide 1 0.308867
SPATA5 spermatogenesis associated 5 0.306632
LRPAP1 low density lipoprotein receptor-related protein associated protein 1 0.303283
RAP1B RAP1B, member of RAS oncogene family 0.301054
PIGB phosphatidylinositol glycan anchor biosynthesis, class B 0.296601
MMP15 matrix metallopeptidase 15 (membrane-inserted) 0.294748
FCGR2A Fc fragment of IgG, low affinity IIa, receptor (CD32) 0.292527
INPP1 inositol polyphosphate-1-phosphatase 0.288829
KIAA0101 KIAA0101 0.287721
CAMKV CaM kinase-like vesicle-associated 0.284401
F3 coagulation factor III (thromboplastin, tissue factor) 0.279612
TDRD7 tudor domain containing 7 0.278877
SHFM1 split hand/foot malformation (ectrodactyly) type 1 0.278509
RAC2 ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) 0.278141
FLNA filamin A, alpha 0.277038
CCR6 chemokine (C-C motif) receptor 6 0.276671
PXN paxillin 0.276671
CCR5 chemokine (C-C motif) receptor 5 (gene/pseudogene) 0.275202
SEBOX SEBOX homeobox 0.274101
ETHE1 ethylmalonic encephalopathy 1 0.273734
ARHGAP1 Rho GTPase activating protein 1 0.270068
ITGAL integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide) 0.270068
ANGPTL4 angiopoietin-like 4 0.268969
KPTN kaptin (actin binding protein) 0.26312
MYO10 myosin X 0.261296
VAMP3 vesicle-associated membrane protein 3 0.256197
SPP1 secreted phosphoprotein 1 0.252564
CCL3 chemokine (C-C motif) ligand 3 0.252202
LASP1 LIM and SH3 protein 1 0.250389
GPR176 G protein-coupled receptor 176 0.246046
ALPPL2 alkaline phosphatase, placental-like 2 0.244601
ALPL alkaline phosphatase, liver/bone/kidney 0.24424
ALPP alkaline phosphatase, placental 0.243879
CD34 CD34 molecule 0.241716
SLC38A1 solute carrier family 38, member 1 0.240636
GLRA1 glycine receptor, alpha 1 0.240276
CCR7 chemokine (C-C motif) receptor 7 0.23776
FLNB filamin B, beta 0.237401
P2RY1 purinergic receptor P2Y, G-protein coupled, 1 0.237401
ARF6 ADP-ribosylation factor 6 0.234533
VASP vasodilator-stimulated phosphoprotein 0.232744
BAIAP2L1 BAI1-associated protein 2-like 1 0.229532
ICOSLG inducible T-cell co-stimulator ligand 0.226686
IL4 interleukin 4 0.224558
MLEC malectin 0.224558
PIK3CG phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma 0.22173
ELANE elastase, neutrophil expressed 0.212627
IL1B interleukin 1, beta 0.21124
MET MET proto-oncogene, receptor tyrosine kinase 0.210894
CDH2 cadherin 2, type 1, N-cadherin (neuronal) 0.209513
ADCY2 adenylate cyclase 2 (brain) 0.205059
EVC Ellis van Creveld protein 0.204378
BHLHE22 basic helix-loop-helix family, member e22 0.204039
MAP3K13 mitogen-activated protein kinase kinase kinase 13 0.203699
CALCA calcitonin-related polypeptide alpha 0.202009
SLC25A16 solute carrier family 25 (mitochondrial carrier), member 16 0.197993
COL8A1 collagen, type VIII, alpha 1 0.194371
VEGFA vascular endothelial growth factor A 0.191456
ROCK2 Rho-associated, coiled-coil containing protein kinase 2 0.189857
FMNL1 formin-like 1 0.189222
PDCL3 phosducin-like 3 0.188905
LYZ lysozyme 0.187333
ITGA4 integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor) 0.18516
CIDEB cell death-inducing DFFA-like effector b 0.182422
IBSP integrin-binding sialoprotein 0.182122
NUP85 nucleoporin 85kDa 0.180045
CCL25 chemokine (C-C motif) ligand 25 0.177724
TNS1 tensin 1 0.177724
CDH5 cadherin 5, type 2 (vascular endothelium) 0.176587
CXCR1 chemokine (C-X-C motif) receptor 1 0.175466
S100A8 S100 calcium binding protein A8 0.174361
CCL20 chemokine (C-C motif) ligand 20 0.172468
CD244 CD244 molecule, natural killer cell receptor 2B4 0.172201
POMGNT1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) 0.171673
RBBP9 retinoblastoma binding protein 9 0.169859
NR2F6 nuclear receptor subfamily 2, group F, member 6 0.16935
SYK spleen tyrosine kinase 0.168349
MFI2 antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5 0.167611
COL8A2 collagen, type VIII, alpha 2 0.167611
MYO1D myosin ID 0.166643
UBQLN2 ubiquilin 2 0.166405
HRAS Harvey rat sarcoma viral oncogene homolog 0.165463
CFL1 cofilin 1 (non-muscle) 0.165463
RAP2B RAP2B, member of RAS oncogene family 0.1632
MMP2 matrix metallopeptidase 2 0.16298
PTCH1 patched 1 0.162763
FPR1 formyl peptide receptor 1 0.162546
CD9 CD9 molecule 0.16233
CLEC7A C-type lectin domain family 7, member A 0.161693
IRAK3 interleukin-1 receptor-associated kinase 3 0.160863
CD14 CD14 molecule 0.160456
SAR1A secretion associated, Ras related GTPase 1A 0.159462
ARF3 ADP-ribosylation factor 3 0.159268
RAB1B RAB1B, member RAS oncogene family 0.157943
DDX4 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 0.156688