retina Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
Description The sensory membrane that lines the eye, is composed of several layers including one containing the rods and cones, and functions as the immediate instrument of vision by receiving the image formed by the lens and converting it into chemical and nervous signals which reach the brain by way of the optic nerve. (BRENDA Tissue and Enzyme Source Ontology, BTO_0001175)
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Genes

180 genes co-occuring with the biological term retina in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
ABCA4 ATP-binding cassette, sub-family A (ABC1), member 4
ABCC5 ATP-binding cassette, sub-family C (CFTR/MRP), member 5
AIPL1 aryl hydrocarbon receptor interacting protein-like 1
ALB albumin
ANG angiogenin, ribonuclease, RNase A family, 5
APOA1 apolipoprotein A-I
APOE apolipoprotein E
APOH apolipoprotein H (beta-2-glycoprotein I)
APP amyloid beta (A4) precursor protein
AQP4 aquaporin 4
ARMS2 age-related maculopathy susceptibility 2
ARNT aryl hydrocarbon receptor nuclear translocator
BCO1 beta-carotene oxygenase 1
BDNF brain-derived neurotrophic factor
BEST1 bestrophin 1
BMP4 bone morphogenetic protein 4
BMPR1A bone morphogenetic protein receptor, type IA
BMPR1B bone morphogenetic protein receptor, type IB
BMPR2 bone morphogenetic protein receptor, type II (serine/threonine kinase)
CA4 carbonic anhydrase IV
CACNA1F calcium channel, voltage-dependent, L type, alpha 1F subunit
CASP9 caspase 9, apoptosis-related cysteine peptidase
CAV1 caveolin 1, caveolae protein, 22kDa
CAV2 caveolin 2
CAV3 caveolin 3
CCDC88A coiled-coil domain containing 88A
CD36 CD36 molecule (thrombospondin receptor)
CDHR1 cadherin-related family member 1
CFH complement factor H
CGB chorionic gonadotropin, beta polypeptide
CHRDL1 chordin-like 1
CHRNA4 cholinergic receptor, nicotinic, alpha 4 (neuronal)
CLDN19 claudin 19
COL4A4 collagen, type IV, alpha 4
CRB1 crumbs family member 1, photoreceptor morphogenesis associated
CRX cone-rod homeobox
CRYAA crystallin, alpha A
CSF2 colony stimulating factor 2 (granulocyte-macrophage)
CSK c-src tyrosine kinase
CXCL12 chemokine (C-X-C motif) ligand 12
CYP27A1 cytochrome P450, family 27, subfamily A, polypeptide 1
CYP2C9 cytochrome P450, family 2, subfamily C, polypeptide 9
CYP46A1 cytochrome P450, family 46, subfamily A, polypeptide 1
CYR61 cysteine-rich, angiogenic inducer, 61
DAB1 Dab, reelin signal transducer, homolog 1 (Drosophila)
DMD dystrophin
DYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A
EDN2 endothelin 2
EFNB2 ephrin-B2
ELOVL4 ELOVL fatty acid elongase 4
EPO erythropoietin
EPOR erythropoietin receptor
FAM161A family with sequence similarity 161, member A
FBLN2 fibulin 2
FGD5 FYVE, RhoGEF and PH domain containing 5
FIZ1 FLT3-interacting zinc finger 1
FLT1 fms-related tyrosine kinase 1
FLVCR1 feline leukemia virus subgroup C cellular receptor 1
FRMD7 FERM domain containing 7
GH1 growth hormone 1
GJA1 gap junction protein, alpha 1, 43kDa
GJC1 gap junction protein, gamma 1, 45kDa
GJD2 gap junction protein, delta 2, 36kDa
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1
GNB5 guanine nucleotide binding protein (G protein), beta 5
GRK1 G protein-coupled receptor kinase 1
GRM6 glutamate receptor, metabotropic 6
GSS glutathione synthetase
GSTM1 glutathione S-transferase mu 1
GUCA1A guanylate cyclase activator 1A (retina)
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)
HK1 hexokinase 1
HSPB1 heat shock 27kDa protein 1
HTR4 5-hydroxytryptamine (serotonin) receptor 4, G protein-coupled
IFNB1 interferon, beta 1, fibroblast
IFNG interferon, gamma
IL11 interleukin 11
IL18 interleukin 18
IMPDH1 IMP (inosine 5'-monophosphate) dehydrogenase 1
KCNJ10 potassium channel, inwardly rectifying subfamily J, member 10
KEAP1 kelch-like ECH-associated protein 1
KLF15 Kruppel-like factor 15
LCA5 Leber congenital amaurosis 5
LEP leptin
LHCGR luteinizing hormone/choriogonadotropin receptor
LINC00575 long intergenic non-protein coding RNA 575
MCAM melanoma cell adhesion molecule
MDM4 MDM4, p53 regulator
MED14 mediator complex subunit 14
MGARP mitochondria-localized glutamic acid-rich protein
MPP1 membrane protein, palmitoylated 1, 55kDa
MPP4 membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4)
MPP5 membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)
MYCN v-myc avian myelocytomatosis viral oncogene neuroblastoma derived homolog
MYO7A myosin VIIA
NES nestin
NEUROD1 neuronal differentiation 1
NEWENTRY Record to support submission of GeneRIFs for a gene not in Gene (human; man).
NF2 neurofibromin 2 (merlin)
NPHP4 nephronophthisis 4
NPY neuropeptide Y
NPY1R neuropeptide Y receptor Y1
NR2E3 nuclear receptor subfamily 2, group E, member 3
NR4A1 nuclear receptor subfamily 4, group A, member 1
NRL neural retina leucine zipper
NTRK1 neurotrophic tyrosine kinase, receptor, type 1
NTRK2 neurotrophic tyrosine kinase, receptor, type 2
NUB1 negative regulator of ubiquitin-like proteins 1
NXNL1 nucleoredoxin-like 1
NYX nyctalopin
OAT ornithine aminotransferase
OLFM3 olfactomedin 3
OPN4 opsin 4
OPN5 opsin 5
OTX1 orthodenticle homeobox 1
OTX2 orthodenticle homeobox 2
OXTR oxytocin receptor
PAX6 paired box 6
PCSK1 proprotein convertase subtilisin/kexin type 1
PCSK2 proprotein convertase subtilisin/kexin type 2
PCSK6 proprotein convertase subtilisin/kexin type 6
PDE6B phosphodiesterase 6B, cGMP-specific, rod, beta
PHB prohibitin
PLA2G5 phospholipase A2, group V
PLK2 polo-like kinase 2
PNPLA2 patatin-like phospholipase domain containing 2
PNPLA6 patatin-like phospholipase domain containing 6
PPP1R17 protein phosphatase 1, regulatory subunit 17
PROX1 prospero homeobox 1
PRPF31 pre-mRNA processing factor 31
RB1 retinoblastoma 1
RBL1 retinoblastoma-like 1
RBL2 retinoblastoma-like 2
RBP3 retinol binding protein 3, interstitial
RDH12 retinol dehydrogenase 12 (all-trans/9-cis/11-cis)
RDH5 retinol dehydrogenase 5 (11-cis/9-cis)
RHBDD2 rhomboid domain containing 2
RLBP1 retinaldehyde binding protein 1
RPE65 retinal pigment epithelium-specific protein 65kDa
RPGR retinitis pigmentosa GTPase regulator
RPGRIP1 retinitis pigmentosa GTPase regulator interacting protein 1
RS1 retinoschisin 1
SARM1 sterile alpha and TIR motif containing 1
SCARB1 scavenger receptor class B, member 1
SEMA3F sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
SEMA4A sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
SERPINF1 serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1
SERPING1 serpin peptidase inhibitor, clade G (C1 inhibitor), member 1
SIX6 SIX homeobox 6
SLC16A12 solute carrier family 16, member 12
SLC1A2 solute carrier family 1 (glial high affinity glutamate transporter), member 2
SLC32A1 solute carrier family 32 (GABA vesicular transporter), member 1
SLC6A8 solute carrier family 6 (neurotransmitter transporter), member 8
SP4 Sp4 transcription factor
SPATA7 spermatogenesis associated 7
SPG11 spastic paraplegia 11 (autosomal recessive)
STC1 stanniocalcin 1
TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor)
TEAD4 TEA domain family member 4
TGFB2 transforming growth factor, beta 2
TGFBI transforming growth factor, beta-induced, 68kDa
TLR3 toll-like receptor 3
TLR9 toll-like receptor 9
TNF tumor necrosis factor
TRPM1 transient receptor potential cation channel, subfamily M, member 1
TSPO translocator protein (18kDa)
TSTD1 thiosulfate sulfurtransferase (rhodanese)-like domain containing 1
TUG1 taurine up-regulated 1 (non-protein coding)
UCP2 uncoupling protein 2 (mitochondrial, proton carrier)
UNC119 unc-119 homolog (C. elegans)
UTRN utrophin
VEGFA vascular endothelial growth factor A
VPS13A vacuolar protein sorting 13 homolog A (S. cerevisiae)
VSX2 visual system homeobox 2
WDR17 WD repeat domain 17
WT1 Wilms tumor 1
YES1 YES proto-oncogene 1, Src family tyrosine kinase
ZBED4 zinc finger, BED-type containing 4
ZEB2 zinc finger E-box binding homeobox 2
ZNF385A zinc finger protein 385A