retrotransposon nucleocapsid Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A complex of the retrotransposon RNA genome, reverse transcriptase, integrase, and associated molecules required for reproduction and integration of the retrotransposon into the host genome; the main structural molecule of the nucleocapsid is often a gag protein homolog. (Gene Ontology, GO_0000943)
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Genes

197 proteins co-occuring with the retrotransposon nucleocapsid cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
CD79A CD79a molecule, immunoglobulin-associated alpha 1.75211
HBG1 hemoglobin, gamma A 1.69399
CD4 CD4 molecule 1.57531
TSG101 tumor susceptibility 101 1.50566
ERVW-1 endogenous retrovirus group W, member 1 1.39628
NEDD4 neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase 1.37409
TMBIM4 transmembrane BAX inhibitor motif containing 4 1.31789
VPS4A vacuolar protein sorting 4 homolog A (S. cerevisiae) 1.26868
PDGFB platelet-derived growth factor beta polypeptide 1.19006
NAA35 N(alpha)-acetyltransferase 35, NatC auxiliary subunit 1.15774
MAK16 MAK16 homolog (S. cerevisiae) 1.13216
APOBEC3G apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G 1.03179
HLA-B major histocompatibility complex, class I, B 1.02779
BST2 bone marrow stromal cell antigen 2 1.00153
GP5 glycoprotein V (platelet) 0.965993
CDSN corneodesmosin 0.898109
FUT2 fucosyltransferase 2 (secretor status included) 0.891631
FAM155B family with sequence similarity 155, member B 0.805689
PPEF1 protein phosphatase, EF-hand calcium binding domain 1 0.796979
CLPS colipase, pancreatic 0.777298
VPS4B vacuolar protein sorting 4 homolog B (S. cerevisiae) 0.769995
CCL28 chemokine (C-C motif) ligand 28 0.753623
CD83 CD83 molecule 0.753623
TMC8 transmembrane channel-like 8 0.748641
HHAT hedgehog acyltransferase 0.740965
RNASE1 ribonuclease, RNase A family, 1 (pancreatic) 0.731076
IRF6 interferon regulatory factor 6 0.724365
PAK1IP1 PAK1 interacting protein 1 0.723472
PLXNA1 plexin A1 0.716346
TRIM5 tripartite motif containing 5 0.709693
CCR5 chemokine (C-C motif) receptor 5 (gene/pseudogene) 0.706598
CD40 CD40 molecule, TNF receptor superfamily member 5 0.672894
AP3B1 adaptor-related protein complex 3, beta 1 subunit 0.639717
SAMHD1 SAM domain and HD domain 1 0.633305
TRIM22 tripartite motif containing 22 0.623504
CLEC10A C-type lectin domain family 10, member A 0.618406
CD86 CD86 molecule 0.599802
IFNA1 interferon, alpha 1 0.597697
NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 0.596855
EXOSC4 exosome component 4 0.593492
MAGEA3 melanoma antigen family A3 0.585105
TLR9 toll-like receptor 9 0.578416
TLR7 toll-like receptor 7 0.570913
KRAS Kirsten rat sarcoma viral oncogene homolog 0.570496
RHOBTB2 Rho-related BTB domain containing 2 0.566754
CHMP7 charged multivesicular body protein 7 0.565923
NANP N-acetylneuraminic acid phosphatase 0.565092
FURIN furin (paired basic amino acid cleaving enzyme) 0.564677
CD80 CD80 molecule 0.563432
IGHV4-39 immunoglobulin heavy variable 4-39 0.561772
HLA-A major histocompatibility complex, class I, A 0.553078
IL2 interleukin 2 0.543587
SAV1 salvador family WW domain containing protein 1 0.534951
CD209 CD209 molecule 0.528388
CASP5 caspase 5, apoptosis-related cysteine peptidase 0.518981
RNASEH2A ribonuclease H2, subunit A 0.512455
DNAJC16 DnaJ (Hsp40) homolog, subfamily C, member 16 0.51164
FEZ1 fasciculation and elongation protein zeta 1 (zygin I) 0.501476
RTTN rotatin 0.500258
TSPO translocator protein (18kDa) 0.490539
WWP1 WW domain containing E3 ubiquitin protein ligase 1 0.485289
PDE6D phosphodiesterase 6D, cGMP-specific, rod, delta 0.483676
AKAP13 A kinase (PRKA) anchor protein 13 0.482467
CSF2 colony stimulating factor 2 (granulocyte-macrophage) 0.470406
TLR2 toll-like receptor 2 0.469203
CUL4A cullin 4A 0.464798
GSTA3 glutathione S-transferase alpha 3 0.456809
GSTA2 glutathione S-transferase alpha 2 0.455214
GSTA4 glutathione S-transferase alpha 4 0.455214
GSTA1 glutathione S-transferase alpha 1 0.452825
GLB1 galactosidase, beta 1 0.452427
SRFBP1 serum response factor binding protein 1 0.451233
CLEC4M C-type lectin domain family 4, member M 0.45004
ATAD3A ATPase family, AAA domain containing 3A 0.449245
CDA cytidine deaminase 0.447259
SPRY2 sprouty homolog 2 (Drosophila) 0.433801
CHMP4B charged multivesicular body protein 4B 0.426711
CENPV centromere protein V 0.424745
CD40LG CD40 ligand 0.422782
CD81 CD81 molecule 0.419252
PRNT prion protein (testis specific) 0.418468
VPS37B vacuolar protein sorting 37 homolog B (S. cerevisiae) 0.414555
PARK2 parkin RBR E3 ubiquitin protein ligase 0.408309
FOXN1 forkhead box N1 0.397423
ISG15 ISG15 ubiquitin-like modifier 0.395485
NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 0.395098
MIR146A microRNA 146a 0.39471
CPVL carboxypeptidase, vitellogenic-like 0.389296
EFNB2 ephrin-B2 0.387751
VPS25 vacuolar protein sorting 25 homolog (S. cerevisiae) 0.381969
CHMP4A charged multivesicular body protein 4A 0.380045
PPIA peptidylprolyl isomerase A (cyclophilin A) 0.377354
CRYGD crystallin, gamma D 0.37505
AADACL3 arylacetamide deacetylase-like 3 0.371599
CD63 CD63 molecule 0.368153
HMP19 HMP19 protein 0.365095
TLR4 toll-like receptor 4 0.363567
MON2 MON2 homolog (S. cerevisiae) 0.36204
EPT1 ethanolaminephosphotransferase 1 0.359752
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 0.357467
TMC6 transmembrane channel-like 6 0.357467
PLP1 proteolipid protein 1 0.355183
CCR7 chemokine (C-C motif) receptor 7 0.351762
ADGRG2 adhesion G protein-coupled receptor G2 0.345314
VPS28 vacuolar protein sorting 28 homolog (S. cerevisiae) 0.342664
HN1L hematological and neurological expressed 1-like 0.333225
IGHV3-30 immunoglobulin heavy variable 3-30 0.329084
MSLN mesothelin 0.328708
CD276 CD276 molecule 0.324576
CLEC3A C-type lectin domain family 3, member A 0.322325
SOCS1 suppressor of cytokine signaling 1 0.321201
TNF tumor necrosis factor 0.320077
B3GALNT1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 0.313718
PRKACB protein kinase, cAMP-dependent, catalytic, beta 0.313344
NCR3 natural cytotoxicity triggering receptor 3 0.311105
CLEC2B C-type lectin domain family 2, member B 0.308494
ICAM3 intercellular adhesion molecule 3 0.305888
HCCAT5 hepatocellular carcinoma associated transcript 5 (non-protein coding) 0.305515
TXNL4B thioredoxin-like 4B 0.301797
CNTN1 contactin 1 0.299197
CER1 cerberus 1, DAN family BMP antagonist 0.295489
ITK IL2-inducible T-cell kinase 0.294748
TPPP tubulin polymerization promoting protein 0.293267
ANGPTL7 angiopoietin-like 7 0.290308
ALPPL2 alkaline phosphatase, placental-like 2 0.287352
ALPL alkaline phosphatase, liver/bone/kidney 0.286614
ALPP alkaline phosphatase, placental 0.286245
ACOT13 acyl-CoA thioesterase 13 0.284032
LGALS2 lectin, galactoside-binding, soluble, 2 0.283295
KIF13A kinesin family member 13A 0.280349
APLF aprataxin and PNKP like factor 0.279612
COPG1 coatomer protein complex, subunit gamma 1 0.278877
WDR61 WD repeat domain 61 0.277406
MYD88 myeloid differentiation primary response 88 0.274468
CNTN5 contactin 5 0.273367
ACAP3 ArfGAP with coiled-coil, ankyrin repeat and PH domains 3 0.271167
GIPR gastric inhibitory polypeptide receptor 0.270434
HLA-C major histocompatibility complex, class I, C 0.266774
GTF3C1 general transcription factor IIIC, polypeptide 1, alpha 220kDa 0.266408
PIR pirin (iron-binding nuclear protein) 0.26312
REXO1L1P REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 1, pseudogene 0.26166
ALG11 ALG11, alpha-1,2-mannosyltransferase 0.253653
HERC5 HECT and RLD domain containing E3 ubiquitin protein ligase 5 0.252202
IL10 interleukin 10 0.252202
SERPINA5 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5 0.249664
MOV10 Mov10 RISC complex RNA helicase 0.243519
CCL3 chemokine (C-C motif) ligand 3 0.242797
RAF1 Raf-1 proto-oncogene, serine/threonine kinase 0.242076
MX1 MX dynamin-like GTPase 1 0.241716
SYNJ2 synaptojanin 2 0.240636
HBE1 hemoglobin, epsilon 1 0.235607
HAS1 hyaluronan synthase 1 0.234533
BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 0.233817
TIMD4 T-cell immunoglobulin and mucin domain containing 4 0.233101
MAPK1 mitogen-activated protein kinase 1 0.233101
SLC10A3 solute carrier family 10, member 3 0.231672
CFB complement factor B 0.229532
IL4 interleukin 4 0.229176
EIF3K eukaryotic translation initiation factor 3, subunit K 0.228464
SLC50A1 solute carrier family 50 (sugar efflux transporter), member 1 0.227041
FUT3 fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group) 0.222083
APP amyloid beta (A4) precursor protein 0.217511
SLC19A1 solute carrier family 19 (folate transporter), member 1 0.21228
FRY furry homolog (Drosophila) 0.211933
MRPL49 mitochondrial ribosomal protein L49 0.209513
BCR breakpoint cluster region 0.206082
VPS18 vacuolar protein sorting 18 homolog (S. cerevisiae) 0.206082
SP6 Sp6 transcription factor 0.203022
PPBPP1 pro-platelet basic protein pseudogene 1 0.200999
LY6E lymphocyte antigen 6 complex, locus E 0.198325
PEG10 paternally expressed 10 0.196669
VPRBP Vpr (HIV-1) binding protein 0.19601
AKR1C2 aldo-keto reductase family 1, member C2 0.194698
ZNF185 zinc finger protein 185 (LIM domain) 0.192423
APOBEC3C apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C 0.187646
APOBEC3A apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A 0.186087
CPA1 carboxypeptidase A1 (pancreatic) 0.183631
FGD1 FYVE, RhoGEF and PH domain containing 1 0.182422
CCL25 chemokine (C-C motif) ligand 25 0.181524
PLA2G6 phospholipase A2, group VI (cytosolic, calcium-independent) 0.179752
IL7R interleukin 7 receptor 0.177724
SDC2 syndecan 2 0.173273
NARS asparaginyl-tRNA synthetase 0.173273
IGHV3-9 immunoglobulin heavy variable 3-9 0.172735
MAP9 microtubule-associated protein 9 0.17141
F8 coagulation factor VIII, procoagulant component 0.171149
CLDN18 claudin 18 0.170888
ALB albumin 0.168101
SOS1 son of sevenless homolog 1 (Drosophila) 0.165697
SEC24C SEC24 family member C 0.164542
APOBEC3B apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B 0.164089
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.16233
GLYATL1 glycine-N-acyltransferase-like 1 0.160863
LCK LCK proto-oncogene, Src family tyrosine kinase 0.160658
SH3GL1 SH3-domain GRB2-like 1 0.160456
DDB1 damage-specific DNA binding protein 1, 127kDa 0.159462
PERP PERP, TP53 apoptosis effector 0.158502