rhabdomere Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description The specialized microvilli-containing organelle on the apical surfaces of a photoreceptor cell containing the visual pigment rhodopsin and most of the proteins involved in phototransduction. (Gene Ontology, GO_0016028)
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Genes

62 proteins co-occuring with the rhabdomere cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
IGF1 insulin-like growth factor 1 (somatomedin C) 2.96665
RHO rhodopsin 1.85525
GHRH growth hormone releasing hormone 1.57073
INS insulin 1.45816
SMC5 structural maintenance of chromosomes 5 1.04632
PRL prolactin 0.952096
CRB1 crumbs family member 1, photoreceptor morphogenesis associated 0.936905
SMCP sperm mitochondria-associated cysteine-rich protein 0.911113
IGF2 insulin-like growth factor 2 0.895794
CDRT1 CMT1A duplicated region transcript 1 0.86169
NSMCE2 non-SMC element 2, MMS21 homolog (S. cerevisiae) 0.839646
MPP5 membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5) 0.836433
TRH thyrotropin-releasing hormone 0.810276
PPFIA4 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4 0.771819
CSH1 chorionic somatomammotropin hormone 1 (placental lactogen) 0.756799
SMC6 structural maintenance of chromosomes 6 0.749094
CSH2 chorionic somatomammotropin hormone 2 0.735565
PPFIA2 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 0.735565
SMC2 structural maintenance of chromosomes 2 0.688576
LPPR4 lipid phosphate phosphatase-related protein type 4 0.66164
MORN4 MORN repeat containing 4 0.656464
FGF1 fibroblast growth factor 1 (acidic) 0.645287
ARRB2 arrestin, beta 2 0.609509
FBXW10 F-box and WD repeat domain containing 10 0.593072
PITPNM1 phosphatidylinositol transfer protein, membrane-associated 1 0.578416
ARRB1 arrestin, beta 1 0.565923
SST somatostatin 0.565508
PTGR1 prostaglandin reductase 1 0.544
SLC1A5 solute carrier family 1 (neutral amino acid transporter), member 5 0.535772
SMC3 structural maintenance of chromosomes 3 0.526341
TRPC6 transient receptor potential cation channel, subfamily C, member 6 0.498636
LIN7A lin-7 homolog A (C. elegans) 0.491348
GNRH1 gonadotropin-releasing hormone 1 (luteinizing-releasing hormone) 0.479245
MOB4 MOB family member 4, phocein 0.459203
YRDC yrdC N(6)-threonylcarbamoyltransferase domain containing 0.413382
SERPINB8 serpin peptidase inhibitor, clade B (ovalbumin), member 8 0.367006
RRAS related RAS viral (r-ras) oncogene homolog 0.366241
PPCS phosphopantothenoylcysteine synthetase 0.362804
TP63 tumor protein p63 0.351382
OPN3 opsin 3 0.338506
LAD1 ladinin 1 0.317082
INSR insulin receptor 0.316708
MADD MAP-kinase activating death domain 0.308867
TRIM10 tripartite motif containing 10 0.304399
RRAS2 related RAS viral (r-ras) oncogene homolog 2 0.299569
TRIM26 tripartite motif containing 26 0.299197
TRIM15 tripartite motif containing 15 0.289569
SNTB1 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) 0.281821
MYO3A myosin IIIA 0.251839
SRRM1 serine/arginine repetitive matrix 1 0.241356
MSN moesin 0.23776
CARS cysteinyl-tRNA synthetase 0.230245
NBPF8 neuroblastoma breakpoint family, member 8 0.224913
ARTN artemin 0.195353
GH1 growth hormone 1 0.186708
IGFBP1 insulin-like growth factor binding protein 1 0.182723
NCK1 NCK adaptor protein 1 0.179752
FCER1A Fc fragment of IgE, high affinity I, receptor for; alpha polypeptide 0.179167
FCER1G Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide 0.176024
TTR transthyretin 0.171149
GH2 growth hormone 2 0.167611
SNRNP40 small nuclear ribonucleoprotein 40kDa (U5) 0.157039