smn complex Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A protein complex that contains the survival motor neuron (SMN) protein and at least eight additional integral components, including the Gemin2-8 and Unrip proteins; the complex is found in the cytoplasm and in nuclear Gems, and is involved in spliceosomal snRNP assembly in the cytoplasm and in pre-mRNA splicing in the nucleus. (Gene Ontology, GO_0032797)
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Genes

47 proteins co-occuring with the smn complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
DDX20 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 2.57065
GEMIN5 gem (nuclear organelle) associated protein 5 2.40918
GEMIN6 gem (nuclear organelle) associated protein 6 2.32164
GEMIN4 gem (nuclear organelle) associated protein 4 2.25202
STRAP serine/threonine kinase receptor associated protein 2.19111
GEMIN7 gem (nuclear organelle) associated protein 7 2.15006
SMN2 survival of motor neuron 2, centromeric 2.06704
GEMIN8 gem (nuclear organelle) associated protein 8 1.82186
ZPR1 ZPR1 zinc finger 1.65332
SMN1 survival of motor neuron 1, telomeric 1.51469
PRMT5 protein arginine methyltransferase 5 1.4774
COIL coilin 1.35266
SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 16kDa 1.22257
SNRPD2 small nuclear ribonucleoprotein D2 polypeptide 16.5kDa 0.959748
CBS cystathionine-beta-synthase 0.919046
BRWD1 bromodomain and WD repeat domain containing 1 0.870426
BIRC6 baculoviral IAP repeat containing 6 0.776841
DDX19B DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B 0.745025
GOLGB1 golgin B1 0.716791
WRAP53 WD repeat containing, antisense to TP53 0.714126
PPP4R2 protein phosphatase 4, regulatory subunit 2 0.711022
PRMT7 protein arginine methyltransferase 7 0.686827
PRPF40A PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) 0.672026
LSM10 LSM10, U7 small nuclear RNA associated 0.63715
FBLL1 fibrillarin-like 1 0.608241
DDX47 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 0.580086
PHAX phosphorylated adaptor for RNA export 0.573828
PPM1G protein phosphatase, Mg2+/Mn2+ dependent, 1G 0.563017
LSM11 LSM11, U7 small nuclear RNA associated 0.550186
WDR77 WD repeat domain 77 0.531668
CD274 CD274 molecule 0.524294
WHSC1 Wolf-Hirschhorn syndrome candidate 1 0.510418
PPP4C protein phosphatase 4, catalytic subunit 0.476831
NAIP NLR family, apoptosis inhibitory protein 0.412992
GOLGA4 golgin A4 0.392388
SNRNP70 small nuclear ribonucleoprotein 70kDa (U1) 0.391615
MAZ MYC-associated zinc finger protein (purine-binding transcription factor) 0.386593
GOLGA3 golgin A3 0.383509
FUS FUS RNA binding protein 0.381199
AGO2 argonaute RISC catalytic component 2 0.335487
NPAT nuclear protein, ataxia-telangiectasia locus 0.324201
MN1 meningioma (disrupted in balanced translocation) 1 0.323825
SNRNP200 small nuclear ribonucleoprotein 200kDa (U5) 0.3227
PRMT2 protein arginine methyltransferase 2 0.318579
USP9X ubiquitin specific peptidase 9, X-linked 0.300682
SOD1 superoxide dismutase 1, soluble 0.285507
KHDRBS1 KH domain containing, RNA binding, signal transduction associated 1 0.206082