starch grain Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description Plant storage body for amylose and amylopectin, 1-100um in diameter. Also contains small amounts of enzymes, amino acids, lipids and nucleic acids. The shape of the grain varies widely amongst species, but is often spherical or disk-shaped. (Gene Ontology, GO_0043036)
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Genes

69 proteins co-occuring with the starch grain cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
AMY1A amylase, alpha 1A (salivary) 1.88901
AMY1C amylase, alpha 1C (salivary) 1.88901
AMY1B amylase, alpha 1B (salivary) 1.88901
AMY2A amylase, alpha 2A (pancreatic) 1.57932
GPI glucose-6-phosphate isomerase 1.33304
MPG N-methylpurine-DNA glycosylase 1.21273
LOXL1 lysyl oxidase-like 1 1.19314
CRYGD crystallin, gamma D 1.13829
SBDS Shwachman-Bodian-Diamond syndrome 1.13267
PYGB phosphorylase, glycogen; brain 1.11327
PYGL phosphorylase, glycogen, liver 1.11276
PYGM phosphorylase, glycogen, muscle 1.1097
UGP2 UDP-glucose pyrophosphorylase 2 1.10817
DPP8 dipeptidyl-peptidase 8 1.00202
IQUB IQ motif and ubiquitin domain containing 0.902745
TFDP3 transcription factor Dp family, member 3 0.875488
LTB lymphotoxin beta (TNF superfamily, member 3) 0.865367
SFTPD surfactant protein D 0.799728
EPM2A epilepsy, progressive myoclonus type 2A, Lafora disease (laforin) 0.764527
HNMT histamine N-methyltransferase 0.747285
ISCA2 iron-sulfur cluster assembly 2 0.722134
TRAPPC4 trafficking protein particle complex 4 0.701304
AGA aspartylglucosaminidase 0.673328
AJAP1 adherens junctions associated protein 1 0.654741
PDC phosducin 0.568001
PLBD2 phospholipase B domain containing 2 0.542352
DPP9 dipeptidyl-peptidase 9 0.540294
GANAB glucosidase, alpha; neutral AB 0.521023
MGAM maltase-glucoamylase 0.514085
CSAD cysteine sulfinic acid decarboxylase 0.494585
FBP1 fructose-1,6-bisphosphatase 1 0.479647
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.470807
PAPSS1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 0.465598
ATN1 atrophin 1 0.435775
DCT dopachrome tautomerase 0.41143
MGST1 microsomal glutathione S-transferase 1 0.397035
HLA-DMA major histocompatibility complex, class II, DM alpha 0.397035
PCK2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) 0.392001
PCK1 phosphoenolpyruvate carboxykinase 1 (soluble) 0.392001
LSM4 LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) 0.388523
IGBP1 immunoglobulin (CD79A) binding protein 1 0.386979
GANC glucosidase, alpha; neutral C 0.378507
TXN thioredoxin 0.365859
KIR2DL3 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 3 0.345692
PDCL phosducin-like 0.321575
SOD2 superoxide dismutase 2, mitochondrial 0.320451
BDH1 3-hydroxybutyrate dehydrogenase, type 1 0.31783
GLUL glutamate-ammonia ligase 0.313344
KIR2DL1 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 1 0.311105
HK1 hexokinase 1 0.298084
GPX2 glutathione peroxidase 2 0.294748
SACS sacsin molecular chaperone 0.294748
CAT catalase 0.292157
GLUD1 glutamate dehydrogenase 1 0.289569
GPX3 glutathione peroxidase 3 0.275569
GIP gastric inhibitory polypeptide 0.253291
GLE1 GLE1 RNA export mediator 0.250026
GLO1 glyoxalase I 0.243519
SOCS2 suppressor of cytokine signaling 2 0.22279
TMPRSS15 transmembrane protease, serine 15 0.214714
RBSN rabenosyn, RAB effector 0.213669
ASPH aspartate beta-hydroxylase 0.196999
AGPS alkylglycerone phosphate synthase 0.183631
TKT transketolase 0.179167
TREH trehalase (brush-border membrane glycoprotein) 0.174911
GUSB glucuronidase, beta 0.171673
INS insulin 0.168847
NOTCH2NL notch 2 N-terminal like 0.167125
NOTCH2 notch 2 0.16342