strain Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
Description A population of organisms that is geneticaly different from others of the same species and possessing a set of defined characteristics. (Experimental Factor Ontology, EFO_0005135)
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Genes

165 genes co-occuring with the biological term strain in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
ACE2 angiotensin I converting enzyme 2
ACVR1 activin A receptor, type I
ADGRF5 adhesion G protein-coupled receptor F5
ADRA2B adrenoceptor alpha 2B
ADRB1 adrenoceptor beta 1
AFP alpha-fetoprotein
AKR1C1 aldo-keto reductase family 1, member C1
AKT1 v-akt murine thymoma viral oncogene homolog 1
ALDH2 aldehyde dehydrogenase 2 family (mitochondrial)
ALPP alkaline phosphatase, placental
APOH apolipoprotein H (beta-2-glycoprotein I)
APP amyloid beta (A4) precursor protein
ARG1 arginase 1
ARHGAP24 Rho GTPase activating protein 24
ATAD3A ATPase family, AAA domain containing 3A
ATP2A3 ATPase, Ca++ transporting, ubiquitous
ATP7B ATPase, Cu++ transporting, beta polypeptide
B2M beta-2-microglobulin
BCL2 B-cell CLL/lymphoma 2
BGLAP bone gamma-carboxyglutamate (gla) protein
BMP2 bone morphogenetic protein 2
C4BPB complement component 4 binding protein, beta
CD14 CD14 molecule
CD207 CD207 molecule, langerin
CD209 CD209 molecule
CD4 CD4 molecule
CD40LG CD40 ligand
CD46 CD46 molecule, complement regulatory protein
CD47 CD47 molecule
CDKN2A cyclin-dependent kinase inhibitor 2A
CHRM3 cholinergic receptor, muscarinic 3
COL1A1 collagen, type I, alpha 1
COL2A1 collagen, type II, alpha 1
COMT catechol-O-methyltransferase
CREB1 cAMP responsive element binding protein 1
CRP C-reactive protein, pentraxin-related
CSF2 colony stimulating factor 2 (granulocyte-macrophage)
CTGF connective tissue growth factor
CXCL1 chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha)
CXCL12 chemokine (C-X-C motif) ligand 12
CXCL8 chemokine (C-X-C motif) ligand 8
CXCR4 chemokine (C-X-C motif) receptor 4
CYBA cytochrome b-245, alpha polypeptide
CYP2C9 cytochrome P450, family 2, subfamily C, polypeptide 9
DDX58 DEAD (Asp-Glu-Ala-Asp) box polypeptide 58
DES desmin
DMD dystrophin
DMP1 dentin matrix acidic phosphoprotein 1
EDN1 endothelin 1
EIF3B eukaryotic translation initiation factor 3, subunit B
EIF4B eukaryotic translation initiation factor 4B
EIF4G1 eukaryotic translation initiation factor 4 gamma, 1
ERBB2 erb-b2 receptor tyrosine kinase 2
ESR1 estrogen receptor 1
ESR2 estrogen receptor 2 (ER beta)
FASLG Fas ligand (TNF superfamily, member 6)
FLNA filamin A, alpha
GJA1 gap junction protein, alpha 1, 43kDa
GM2A GM2 ganglioside activator
GP6 glycoprotein VI (platelet)
GYPB glycophorin B (MNS blood group)
HGF hepatocyte growth factor (hepapoietin A; scatter factor)
HRAS Harvey rat sarcoma viral oncogene homolog
HTN3 histatin 3
ICAM1 intercellular adhesion molecule 1
IER3 immediate early response 3
IFNB1 interferon, beta 1, fibroblast
IGKC immunoglobulin kappa constant
IGL immunoglobulin lambda locus
IL10 interleukin 10
IL12A interleukin 12A
IL12B interleukin 12B
IL16 interleukin 16
IL17A interleukin 17A
IL17F interleukin 17F
IL1A interleukin 1, alpha
IL1B interleukin 1, beta
IL1R1 interleukin 1 receptor, type I
IL4 interleukin 4
IL4R interleukin 4 receptor
IL6 interleukin 6
ILK integrin-linked kinase
ITGA4 integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
ITGB7 integrin, beta 7
KRAS Kirsten rat sarcoma viral oncogene homolog
KRT18 keratin 18, type I
MAP3K8 mitogen-activated protein kinase kinase kinase 8
MAPK1 mitogen-activated protein kinase 1
MAPK14 mitogen-activated protein kinase 14
MAPK3 mitogen-activated protein kinase 3
MAPK8 mitogen-activated protein kinase 8
MAPK8IP3 mitogen-activated protein kinase 8 interacting protein 3
MARK2 MAP/microtubule affinity-regulating kinase 2
MCL1 myeloid cell leukemia 1
MMP1 matrix metallopeptidase 1
MMP13 matrix metallopeptidase 13
MMP3 matrix metallopeptidase 3
MMP9 matrix metallopeptidase 9
MUC1 mucin 1, cell surface associated
MUC16 mucin 16, cell surface associated
MVP major vault protein
MYC v-myc avian myelocytomatosis viral oncogene homolog
NAA10 N(alpha)-acetyltransferase 10, NatA catalytic subunit
NFKB1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1
NLRP3 NLR family, pyrin domain containing 3
NODAL nodal growth differentiation factor
NPPB natriuretic peptide B
NRG1 neuregulin 1
NTF3 neurotrophin 3
PALLD palladin, cytoskeletal associated protein
PAWR PRKC, apoptosis, WT1, regulator
PILRA paired immunoglobin-like type 2 receptor alpha
PLG plasminogen
POR P450 (cytochrome) oxidoreductase
PPL periplakin
PRG4 proteoglycan 4
PRNP prion protein
PTGER4 prostaglandin E receptor 4 (subtype EP4)
PTK2 protein tyrosine kinase 2
PXN paxillin
RAC1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)
RET ret proto-oncogene
RHOA ras homolog family member A
RUNX2 runt-related transcription factor 2
S100A1 S100 calcium binding protein A1
S100A8 S100 calcium binding protein A8
S100A9 S100 calcium binding protein A9
S100B S100 calcium binding protein B
SAMHD1 SAM domain and HD domain 1
SCEL sciellin
SCN1A sodium channel, voltage gated, type I alpha subunit
SDC2 syndecan 2
SERPINA1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1
SERPING1 serpin peptidase inhibitor, clade G (C1 inhibitor), member 1
SFTPD surfactant protein D
SIRPA signal-regulatory protein alpha
SLC16A4 solute carrier family 16, member 4
SLC25A4 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4
SLC25A5 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5
SLC25A6 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6
SLC2A4 solute carrier family 2 (facilitated glucose transporter), member 4
SNCA synuclein, alpha (non A4 component of amyloid precursor)
SOCS3 suppressor of cytokine signaling 3
SOST sclerostin
SOX9 SRY (sex determining region Y)-box 9
SPRR3 small proline-rich protein 3
STAT1 signal transducer and activator of transcription 1, 91kDa
STAT2 signal transducer and activator of transcription 2, 113kDa
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor)
TERT telomerase reverse transcriptase
TGFB1 transforming growth factor, beta 1
TIAM1 T-cell lymphoma invasion and metastasis 1
TLR5 toll-like receptor 5
TNC tenascin C
TNF tumor necrosis factor
TNFRSF11B tumor necrosis factor receptor superfamily, member 11b
TNFSF11 tumor necrosis factor (ligand) superfamily, member 11
TNNT2 troponin T type 2 (cardiac)
TUSC2 tumor suppressor candidate 2
UNG uracil-DNA glycosylase
VEGFA vascular endothelial growth factor A
WAS Wiskott-Aldrich syndrome
WIPF1 WAS/WASL interacting protein family, member 1
XIAP X-linked inhibitor of apoptosis, E3 ubiquitin protein ligase