stroma Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
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Genes

212 genes co-occuring with the biological term stroma in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
ACAN aggrecan
ACTBL2 actin, beta-like 2
ADAM10 ADAM metallopeptidase domain 10
ADAM12 ADAM metallopeptidase domain 12
ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif, 1
ADAMTS12 ADAM metallopeptidase with thrombospondin type 1 motif, 12
ADGRG1 adhesion G protein-coupled receptor G1
ADM adrenomedullin
ALDH1A1 aldehyde dehydrogenase 1 family, member A1
ALOX15 arachidonate 15-lipoxygenase
ALX4 ALX homeobox 4
ANGPT1 angiopoietin 1
ANGPT2 angiopoietin 2
ANGPT4 angiopoietin 4
ANTXR1 anthrax toxin receptor 1
AR androgen receptor
AXL AXL receptor tyrosine kinase
BMP2 bone morphogenetic protein 2
BMP4 bone morphogenetic protein 4
BMPR2 bone morphogenetic protein receptor, type II (serine/threonine kinase)
BRAF B-Raf proto-oncogene, serine/threonine kinase
BRCA1 breast cancer 1, early onset
BSG basigin (Ok blood group)
CADM1 cell adhesion molecule 1
CALD1 caldesmon 1
CAPG capping protein (actin filament), gelsolin-like
CASP3 caspase 3, apoptosis-related cysteine peptidase
CAV1 caveolin 1, caveolae protein, 22kDa
CCL2 chemokine (C-C motif) ligand 2
CD163 CD163 molecule
CD164 CD164 molecule, sialomucin
CD1D CD1d molecule
CD248 CD248 molecule, endosialin
CD28 CD28 molecule
CD34 CD34 molecule
CD4 CD4 molecule
CD40LG CD40 ligand
CD44 CD44 molecule (Indian blood group)
CD99 CD99 molecule
CHST6 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6
CLDN4 claudin 4
CLIC4 chloride intracellular channel 4
CNR1 cannabinoid receptor 1 (brain)
CSF3 colony stimulating factor 3 (granulocyte)
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa
CXCL12 chemokine (C-X-C motif) ligand 12
CXCL16 chemokine (C-X-C motif) ligand 16
CXCL9 chemokine (C-X-C motif) ligand 9
CXCR6 chemokine (C-X-C motif) receptor 6
CYP11A1 cytochrome P450, family 11, subfamily A, polypeptide 1
CYP17A1 cytochrome P450, family 17, subfamily A, polypeptide 1
CYP19A1 cytochrome P450, family 19, subfamily A, polypeptide 1
DCLK1 doublecortin-like kinase 1
DCN decorin
DEFB109 defensin, beta 109
DKK3 dickkopf WNT signaling pathway inhibitor 3
DPP4 dipeptidyl-peptidase 4
EBAG9 estrogen receptor binding site associated, antigen, 9
EGFR epidermal growth factor receptor
ELAVL1 ELAV like RNA binding protein 1
EN2 engrailed homeobox 2
EPB41L3 erythrocyte membrane protein band 4.1-like 3
EPCAM epithelial cell adhesion molecule
ERBB4 erb-b2 receptor tyrosine kinase 4
ESR1 estrogen receptor 1
ESR2 estrogen receptor 2 (ER beta)
ESRRB estrogen-related receptor beta
F2R coagulation factor II (thrombin) receptor
FAAH fatty acid amide hydrolase
FERMT2 fermitin family member 2
FGF2 fibroblast growth factor 2 (basic)
FGF7 fibroblast growth factor 7
FGF9 fibroblast growth factor 9
FGFR1 fibroblast growth factor receptor 1
FGFR2 fibroblast growth factor receptor 2
FIGF c-fos induced growth factor (vascular endothelial growth factor D)
FLT1 fms-related tyrosine kinase 1
FLT4 fms-related tyrosine kinase 4
FN1 fibronectin 1
FOXL2 forkhead box L2
GH1 growth hormone 1
GHR growth hormone receptor
GLI1 GLI family zinc finger 1
GLI2 GLI family zinc finger 2
GLRX3 glutaredoxin 3
GREM1 gremlin 1, DAN family BMP antagonist
GSTP1 glutathione S-transferase pi 1
HGF hepatocyte growth factor (hepapoietin A; scatter factor)
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)
HMGB1 high mobility group box 1
HSPE1 heat shock 10kDa protein 1
IDO1 indoleamine 2,3-dioxygenase 1
IGF1R insulin-like growth factor 1 receptor
IHH indian hedgehog
IL1A interleukin 1, alpha
IL1B interleukin 1, beta
IL6ST interleukin 6 signal transducer
IL7 interleukin 7
INHA inhibin, alpha
ITGB2 integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)
JAG2 jagged 2
KDR kinase insert domain receptor
KLK4 kallikrein-related peptidase 4
KLRK1 killer cell lectin-like receptor subfamily K, member 1
KRT19 keratin 19, type I
LGALS1 lectin, galactoside-binding, soluble, 1
LIMS1 LIM and senescent cell antigen-like domains 1
LMO7 LIM domain 7
LTBP4 latent transforming growth factor beta binding protein 4
LUM lumican
MAPK1 mitogen-activated protein kinase 1
MAPK14 mitogen-activated protein kinase 14
MAPK3 mitogen-activated protein kinase 3
MIR126 microRNA 126
MIR205 microRNA 205
MIR21 microRNA 21
MIR548M microRNA 548m
MME membrane metallo-endopeptidase
MMP10 matrix metallopeptidase 10
MMP2 matrix metallopeptidase 2
MMP26 matrix metallopeptidase 26
MMP7 matrix metallopeptidase 7
MMP9 matrix metallopeptidase 9
MST1 macrophage stimulating 1
MUC16 mucin 16, cell surface associated
NAPEPLD N-acyl phosphatidylethanolamine phospholipase D
NES nestin
NGFR nerve growth factor receptor
NOS2 nitric oxide synthase 2, inducible
NOS3 nitric oxide synthase 3 (endothelial cell)
NOTCH1 notch 1
NOX4 NADPH oxidase 4
NR2F2 nuclear receptor subfamily 2, group F, member 2
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)
NRP1 neuropilin 1
PAK6 p21 protein (Cdc42/Rac)-activated kinase 6
PALLD palladin, cytoskeletal associated protein
PCSK9 proprotein convertase subtilisin/kexin type 9
PDE11A phosphodiesterase 11A
PDGFRA platelet-derived growth factor receptor, alpha polypeptide
PDGFRB platelet-derived growth factor receptor, beta polypeptide
PDIA6 protein disulfide isomerase family A, member 6
PDPN podoplanin
PGF placental growth factor
PGR progesterone receptor
PIM1 Pim-1 proto-oncogene, serine/threonine kinase
PIP4K2A phosphatidylinositol-5-phosphate 4-kinase, type II, alpha
PLAU plasminogen activator, urokinase
PLAUR plasminogen activator, urokinase receptor
POSTN periostin, osteoblast specific factor
PROM1 prominin 1
PSMC3IP PSMC3 interacting protein
PTEN phosphatase and tensin homolog
PTGER2 prostaglandin E receptor 2 (subtype EP2), 53kDa
PTGER4 prostaglandin E receptor 4 (subtype EP4)
PTGS1 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
RARB retinoic acid receptor, beta
RLN1 relaxin 1
RMDN3 regulator of microtubule dynamics 3
S100A8 S100 calcium binding protein A8
S100A9 S100 calcium binding protein A9
SDC1 syndecan 1
SERPINA5 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1
SFRP1 secreted frizzled-related protein 1
SHH sonic hedgehog
SLC22A2 solute carrier family 22 (organic cation transporter), member 2
SLC22A3 solute carrier family 22 (organic cation transporter), member 3
SLC29A4 solute carrier family 29 (equilibrative nucleoside transporter), member 4
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1
SNAI1 snail family zinc finger 1
SOX18 SRY (sex determining region Y)-box 18
SPARC secreted protein, acidic, cysteine-rich (osteonectin)
SPP1 secreted phosphoprotein 1
SRD5A2 steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)
SRSF1 serine/arginine-rich splicing factor 1
STX2 syntaxin 2
SULT1E1 sulfotransferase family 1E, estrogen-preferring, member 1
TACR1 tachykinin receptor 1
TAGLN transgelin
TGFB1 transforming growth factor, beta 1
TGFBI transforming growth factor, beta-induced, 68kDa
TGFBR2 transforming growth factor, beta receptor II (70/80kDa)
TGM2 transglutaminase 2
THBS1 thrombospondin 1
THBS2 thrombospondin 2
THY1 Thy-1 cell surface antigen
TIE1 tyrosine kinase with immunoglobulin-like and EGF-like domains 1
TIMP1 TIMP metallopeptidase inhibitor 1
TIMP2 TIMP metallopeptidase inhibitor 2
TIMP4 TIMP metallopeptidase inhibitor 4
TLR2 toll-like receptor 2
TLR3 toll-like receptor 3
TLR4 toll-like receptor 4
TLR9 toll-like receptor 9
TMSB4X thymosin beta 4, X-linked
TNC tenascin C
TNF tumor necrosis factor
TNFRSF11A tumor necrosis factor receptor superfamily, member 11a, NFKB activator
TNFSF13 tumor necrosis factor (ligand) superfamily, member 13
TNFSF13B tumor necrosis factor (ligand) superfamily, member 13b
TNN tenascin N
TP53 tumor protein p53
TWIST1 twist family bHLH transcription factor 1
TYMP thymidine phosphorylase
VCAN versican
VEGFA vascular endothelial growth factor A
VEGFC vascular endothelial growth factor C
VTCN1 V-set domain containing T cell activation inhibitor 1
WFDC1 WAP four-disulfide core domain 1
WNT1 wingless-type MMTV integration site family, member 1