subpallium Gene Set

Dataset TISSUES Text-mining Tissue Protein Expression Evidence Scores
Category structural or functional annotations
Type tissue
Description The subpallium is the ventral telencephalon of a birds brain. (BRENDA Tissue and Enzyme Source Ontology, BTO_0003401)
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Genes

133 proteins co-occuring with the tissue subpallium in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.

Symbol Name Standardized Value
TBR1 T-box, brain, 1 2.11553
GSX2 GS homeobox 2 2.08082
NKX2-1 NK2 homeobox 1 2.04177
LHX6 LIM homeobox 6 1.99428
LHX5 LIM homeobox 5 1.8672
PAX6 paired box 6 1.68852
EMX1 empty spiracles homeobox 1 1.68703
CALB2 calbindin 2 1.63306
DBX1 developing brain homeobox 1 1.52617
RELN reelin 1.5138
CALB1 calbindin 1, 28kDa 1.48458
DLX1 distal-less homeobox 1 1.44682
ISL1 ISL LIM homeobox 1 1.44589
CDH8 cadherin 8, type 2 1.40294
LHX9 LIM homeobox 9 1.39238
DLX5 distal-less homeobox 5 1.33093
FOXG1 forkhead box G1 1.30928
CUX2 cut-like homeobox 2 1.28322
NPAS1 neuronal PAS domain protein 1 1.24342
SHH sonic hedgehog 1.22247
SEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A 1.20912
DPY19L1 dpy-19-like 1 (C. elegans) 1.20067
SP8 Sp8 transcription factor 1.15939
ZCCHC12 zinc finger, CCHC domain containing 12 1.15229
TH tyrosine hydroxylase 1.14387
PVALB parvalbumin 1.12261
ASCL1 achaete-scute family bHLH transcription factor 1 1.11597
LHX1 LIM homeobox 1 1.0806
GAD1 glutamate decarboxylase 1 (brain, 67kDa) 1.05897
NR2E1 nuclear receptor subfamily 2, group E, member 1 0.998037
CDH7 cadherin 7, type 2 0.9889
CDH4 cadherin 4, type 1, R-cadherin (retinal) 0.971119
LHX2 LIM homeobox 2 0.965063
CDH19 cadherin 19, type 2 0.950823
NKX2-2 NK2 homeobox 2 0.946947
ZNF503 zinc finger protein 503 0.930193
LMO1 LIM domain only 1 (rhombotin 1) 0.924623
SST somatostatin 0.921199
TAC1 tachykinin, precursor 1 0.915642
CLEC3B C-type lectin domain family 3, member B 0.898595
LSAMP limbic system-associated membrane protein 0.893496
EMX2 empty spiracles homeobox 2 0.886286
DLX2 distal-less homeobox 2 0.885015
HMX2 H6 family homeobox 2 0.865577
SCGN secretagogin, EF-hand calcium binding protein 0.858416
NEUROG1 neurogenin 1 0.835318
CDH6 cadherin 6, type 2, K-cadherin (fetal kidney) 0.786883
ARX aristaless related homeobox 0.748753
GLI3 GLI family zinc finger 3 0.746689
EPHA7 EPH receptor A7 0.73803
CUX1 cut-like homeobox 1 0.733912
OTP orthopedia homeobox 0.733089
CNTN2 contactin 2 (axonal) 0.728152
PCDH17 protocadherin 17 0.724041
SOX6 SRY (sex determining region Y)-box 6 0.717061
LMO3 LIM domain only 3 (rhombotin-like 2) 0.717061
PCDH7 protocadherin 7 0.714189
PLXNC1 plexin C1 0.713369
PCDH9 protocadherin 9 0.712139
MAFB v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B 0.693311
NR2F2 nuclear receptor subfamily 2, group F, member 2 0.660304
GSX1 GS homeobox 1 0.65056
PCDH1 protocadherin 1 0.648938
GAD2 glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa) 0.63638
FGF8 fibroblast growth factor 8 (androgen-induced) 0.627485
NPY neuropeptide Y 0.619814
RTN1 reticulon 1 0.616183
SLC17A6 solute carrier family 17 (vesicular glutamate transporter), member 6 0.614167
OLIG2 oligodendrocyte lineage transcription factor 2 0.602088
EBF2 early B-cell factor 2 0.600077
SHOX2 short stature homeobox 2 0.598469
UBE2I ubiquitin-conjugating enzyme E2I 0.596862
PCDH10 protocadherin 10 0.575216
RORB RAR-related orphan receptor B 0.568025
EBF1 early B-cell factor 1 0.540981
MNX1 motor neuron and pancreas homeobox 1 0.538209
DLX4 distal-less homeobox 4 0.535438
FZD8 frizzled class receptor 8 0.522405
MEA1 male-enhanced antigen 1 0.514136
FZD10 frizzled class receptor 10 0.512171
RPGRIP1L RPGRIP1-like 0.506672
NPS neuropeptide S 0.502357
CHAT choline O-acetyltransferase 0.499223
EPHB3 EPH receptor B3 0.496092
EFNA3 ephrin-A3 0.491791
PCNA proliferating cell nuclear antigen 0.4914
DLX6 distal-less homeobox 6 0.485156
EPHA4 EPH receptor A4 0.483596
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C 0.476201
CXCL12 chemokine (C-X-C motif) ligand 12 0.475034
NR2F1 nuclear receptor subfamily 2, group F, member 1 0.4634
GTF2I general transcription factor IIi 0.461465
FEZF2 FEZ family zinc finger 2 0.457987
NEUROG2 neurogenin 2 0.452198
DCLK1 doublecortin-like kinase 1 0.442194
SEMA7A semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group) 0.437205
ELAVL2 ELAV like neuron-specific RNA binding protein 2 0.429165
TLE1 transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila) 0.428783
PLXNA1 plexin A1 0.419242
ARHGEF7 Rho guanine nucleotide exchange factor (GEF) 7 0.416195
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A 0.408972
ACHE acetylcholinesterase (Yt blood group) 0.398357
PENK proenkephalin 0.385896
GBX2 gastrulation brain homeobox 2 0.382884
CELSR3 cadherin, EGF LAG seven-pass G-type receptor 3 0.379499
UCN3 urocortin 3 0.372743
SOX5 SRY (sex determining region Y)-box 5 0.370496
PCDH8 protocadherin 8 0.360409
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) 0.360036
FOXC1 forkhead box C1 0.35743
NKX6-2 NK6 homeobox 2 0.357058
PCDH11Y protocadherin 11 Y-linked 0.341863
NRG1 neuregulin 1 0.339282
NEUROD1 neuronal differentiation 1 0.33744
BCL11B B-cell CLL/lymphoma 11B (zinc finger protein) 0.333763
PCDH11X protocadherin 11 X-linked 0.329361
ROBO1 roundabout, axon guidance receptor, homolog 1 (Drosophila) 0.328994
CRH corticotropin releasing hormone 0.32497
SEMA3F sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F 0.317679
WNT7B wingless-type MMTV integration site family, member 7B 0.307167
SDF4 stromal cell derived factor 4 0.307167
FGF3 fibroblast growth factor 3 0.29673
POLDIP3 polymerase (DNA-directed), delta interacting protein 3 0.287092
SFRP2 secreted frizzled-related protein 2 0.274045
HGFAC HGF activator 0.262304
SIX3 SIX homeobox 3 0.249329
FZD1 frizzled class receptor 1 0.228234
PPP1R1B protein phosphatase 1, regulatory (inhibitor) subunit 1B 0.226411
TAP1 transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) 0.224893
EFNA5 ephrin-A5 0.224645
SRPX2 sushi-repeat containing protein, X-linked 2 0.222938
CDH11 cadherin 11, type 2, OB-cadherin (osteoblast) 0.216933
DCX doublecortin 0.213833