symbiosome Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A double-enveloped cell compartment, composed of an endosymbiont with its plasmalemma (as inner envelope) and a non-endosymbiotic outer envelope (the perisymbiontic membrane). (Gene Ontology, GO_0043659)
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Genes

44 proteins co-occuring with the symbiosome cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
NLRX1 NLR family member X1 1.49153
ATN1 atrophin 1 1.29371
KRT15 keratin 15, type I 0.787359
CHDH choline dehydrogenase 0.758615
PLEKHB1 pleckstrin homology domain containing, family B (evectins) member 1 0.738713
VIT vitrin 0.720351
HMGA2 high mobility group AT-hook 2 0.712351
VPS39 vacuolar protein sorting 39 homolog (S. cerevisiae) 0.695148
CYLD cylindromatosis (turban tumor syndrome) 0.681155
SLC11A2 solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2 0.601066
RAB3C RAB3C, member RAS oncogene family 0.595173
LRP5 low density lipoprotein receptor-related protein 5 0.591392
UGDH UDP-glucose 6-dehydrogenase 0.560528
VPS11 vacuolar protein sorting 11 homolog (S. cerevisiae) 0.557629
GNB2L1 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 0.553491
DNAH8 dynein, axonemal, heavy chain 8 0.553491
MAT1A methionine adenosyltransferase I, alpha 0.544
SLC26A2 solute carrier family 26 (anion exchanger), member 2 0.533719
NMS neuromedin S 0.510826
GLUL glutamate-ammonia ligase 0.510011
ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 0.49661
NDUFAB1 NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa 0.47844
CALM3 calmodulin 3 (phosphorylase kinase, delta) 0.464397
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.463997
CALM1 calmodulin 1 (phosphorylase kinase, delta) 0.463598
CTBP2 C-terminal binding protein 2 0.446069
TSPO translocator protein (18kDa) 0.41182
NPC1L1 NPC1-like 1 0.408699
NGB neuroglobin 0.399363
MIP major intrinsic protein of lens fiber 0.398199
RTN4R reticulon 4 receptor 0.380429
XDH xanthine dehydrogenase 0.374283
HM13 histocompatibility (minor) 13 0.359752
CHKA choline kinase alpha 0.355563
NTSR1 neurotensin receptor 1 (high affinity) 0.310732
MAP2K1 mitogen-activated protein kinase kinase 1 0.30924
CYGB cytoglobin 0.305888
NPC2 Niemann-Pick disease, type C2 0.239916
RAB1A RAB1A, member RAS oncogene family 0.230601
AQP1 aquaporin 1 (Colton blood group) 0.225622
MGAM maltase-glucoamylase 0.198658
VDAC1 voltage-dependent anion channel 1 0.185469
GUSB glucuronidase, beta 0.157397
OGDH oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) 0.157397