thylakoid Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation. (Gene Ontology, GO_0009579)
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Genes

289 proteins co-occuring with the thylakoid cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
ARPP21 cAMP-regulated phosphoprotein, 21kDa 3.21345
BFSP2 beaded filament structural protein 2, phakinin 3.10024
SPX spexin hormone 2.81054
CYP26A1 cytochrome P450, family 26, subfamily A, polypeptide 1 1.92647
DECR1 2,4-dienoyl CoA reductase 1, mitochondrial 1.8821
YME1L1 YME1-like 1 ATPase 1.84224
MGAM maltase-glucoamylase 1.68787
TSPO translocator protein (18kDa) 1.6684
SAMHD1 SAM domain and HD domain 1 1.66296
GPR152 G protein-coupled receptor 152 1.62236
SH3TC2 SH3 domain and tetratricopeptide repeats 2 1.61119
FES FES proto-oncogene, tyrosine kinase 1.58968
FDXR ferredoxin reductase 1.54914
SOD2 superoxide dismutase 2, mitochondrial 1.53387
CLEC3A C-type lectin domain family 3, member A 1.53218
CLEC2B C-type lectin domain family 2, member B 1.5113
CLEC10A C-type lectin domain family 10, member A 1.5034
CAT catalase 1.48701
UQCRFS1 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 1.46778
TXN thioredoxin 1.38017
SMAD4 SMAD family member 4 1.37133
ATP5O ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit 1.28569
PLOD1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 1.2793
DNAH8 dynein, axonemal, heavy chain 8 1.23922
CPA1 carboxypeptidase A1 (pancreatic) 1.21376
NME1-NME2 NME1-NME2 readthrough 1.188
GSR glutathione reductase 1.17568
BPHL biphenyl hydrolase-like (serine hydrolase) 1.17517
NME2 NME/NM23 nucleoside diphosphate kinase 2 1.10002
LGALS3BP lectin, galactoside-binding, soluble, 3 binding protein 1.08679
CPA2 carboxypeptidase A2 (pancreatic) 1.07461
FBP1 fructose-1,6-bisphosphatase 1 1.05337
PCK2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) 1.04934
PCK1 phosphoenolpyruvate carboxykinase 1 (soluble) 1.04884
CDSN corneodesmosin 1.01833
MED4 mediator complex subunit 4 0.961187
UNK unkempt family zinc finger 0.961187
MDH1 malate dehydrogenase 1, NAD (soluble) 0.949236
MDH2 malate dehydrogenase 2, NAD (mitochondrial) 0.93785
PPOX protoporphyrinogen oxidase 0.881477
ATP5E ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit 0.866746
CLPP caseinolytic mitochondrial matrix peptidase proteolytic subunit 0.851124
CLPS colipase, pancreatic 0.847451
NOL9 nucleolar protein 9 0.810735
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.807982
ATP12A ATPase, H+/K+ transporting, nongastric, alpha polypeptide 0.803396
EFS embryonal Fyn-associated substrate 0.802479
ATP4A ATPase, H+/K+ exchanging, alpha polypeptide 0.802021
GLUL glutamate-ammonia ligase 0.800645
BLID BH3-like motif containing, cell death inducer 0.783241
SNRNP40 small nuclear ribonucleoprotein 40kDa (U5) 0.752263
NETO2 neuropilin (NRP) and tolloid (TLL)-like 2 0.750904
CCDC130 coiled-coil domain containing 130 0.738713
SRP54 signal recognition particle 54kDa 0.729284
DNPH1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 0.69427
SRI sorcin 0.690764
AIP aryl hydrocarbon receptor interacting protein 0.690764
FECH ferrochelatase 0.690326
F2 coagulation factor II (thrombin) 0.689013
PAF1 Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae) 0.678978
HPD 4-hydroxyphenylpyruvate dioxygenase 0.663368
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.658188
CELSR3 cadherin, EGF LAG seven-pass G-type receptor 3 0.655602
RUNX1T1 runt-related transcription factor 1; translocated to, 1 (cyclin D-related) 0.650439
DHX9 DEAH (Asp-Glu-Ala-His) box helicase 9 0.641429
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.640145
FKBP2 FK506 binding protein 2, 13kDa 0.639289
PTGDR prostaglandin D2 receptor (DP) 0.633305
PSCA prostate stem cell antigen 0.627761
TKT transketolase 0.627761
PC pyruvate carboxylase 0.62393
THEG theg spermatid protein 0.617133
CELA2A chymotrypsin-like elastase family, member 2A 0.612895
LRRC25 leucine rich repeat containing 25 0.610355
PERP PERP, TP53 apoptosis effector 0.603174
PDSS1 prenyl (decaprenyl) diphosphate synthase, subunit 1 0.602752
RPE ribulose-5-phosphate-3-epimerase 0.59896
HTRA1 HtrA serine peptidase 1 0.593492
BLVRB biliverdin reductase B 0.593072
TRO trophinin 0.590553
CRYZ crystallin, zeta (quinone reductase) 0.590133
KRT86 keratin 86, type II 0.590133
TGM1 transglutaminase 1 0.588037
GUSB glucuronidase, beta 0.58678
LAP3 leucine aminopeptidase 3 0.586361
ALB albumin 0.565923
PPP1R14A protein phosphatase 1, regulatory (inhibitor) subunit 14A 0.564262
GMPPB GDP-mannose pyrophosphorylase B 0.5597
PRDX5 peroxiredoxin 5 0.54936
HAO1 hydroxyacid oxidase (glycolate oxidase) 1 0.545648
HAO2 hydroxyacid oxidase 2 (long chain) 0.544411
TP53INP1 tumor protein p53 inducible nuclear protein 1 0.540294
RHO rhodopsin 0.532898
PGP phosphoglycolate phosphatase 0.523067
WBP1L WW domain binding protein 1-like 0.521432
TAS1R1 taste receptor, type 1, member 1 0.512862
ANGPTL6 angiopoietin-like 6 0.502288
MANEAL mannosidase, endo-alpha-like 0.498636
ALDH18A1 aldehyde dehydrogenase 18 family, member A1 0.492157
NOC2L nucleolar complex associated 2 homolog (S. cerevisiae) 0.488519
PSD4 pleckstrin and Sec7 domain containing 4 0.473215
PXT1 peroxisomal, testis specific 1 0.473215
AURKAIP1 aurora kinase A interacting protein 1 0.472412
CACNB4 calcium channel, voltage-dependent, beta 4 subunit 0.471208
CARS cysteinyl-tRNA synthetase 0.463598
TSKU tsukushi, small leucine rich proteoglycan 0.458006
RABGGTB Rab geranylgeranyltransferase, beta subunit 0.452029
NPDC1 neural proliferation, differentiation and control, 1 0.445672
RPIA ribose 5-phosphate isomerase A 0.444482
FDX1 ferredoxin 1 0.4425
SFTPA1 surfactant protein A1 0.440916
XPNPEP1 X-prolyl aminopeptidase (aminopeptidase P) 1, soluble 0.437356
PAPSS1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 0.434591
ZNF197 zinc finger protein 197 0.434196
TPI1 triosephosphate isomerase 1 0.431041
INF2 inverted formin, FH2 and WH2 domain containing 0.431041
PNLIP pancreatic lipase 0.429859
ATP11A ATPase, class VI, type 11A 0.427891
CAPNS1 calpain, small subunit 1 0.427497
ZBTB48 zinc finger and BTB domain containing 48 0.423174
LYZ lysozyme 0.418468
IL4I1 interleukin 4 induced 1 0.417685
CARS2 cysteinyl-tRNA synthetase 2, mitochondrial (putative) 0.416511
HSPA4 heat shock 70kDa protein 4 0.412601
COG8 component of oligomeric golgi complex 8 0.409089
PSD3 pleckstrin and Sec7 domain containing 3 0.407919
GPR182 G protein-coupled receptor 182 0.401304
CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 0.400527
G6PD glucose-6-phosphate dehydrogenase 0.395098
COQ6 coenzyme Q6 monooxygenase 0.393936
AVPR2 arginine vasopressin receptor 2 0.391615
TNFRSF11A tumor necrosis factor receptor superfamily, member 11a, NFKB activator 0.388909
VKORC1 vitamin K epoxide reductase complex, subunit 1 0.386593
ADAMTS2 ADAM metallopeptidase with thrombospondin type 1 motif, 2 0.386208
CFH complement factor H 0.37966
CDIPT CDP-diacylglycerol--inositol 3-phosphatidyltransferase 0.372749
PPA1 pyrophosphatase (inorganic) 1 0.372366
RNH1 ribonuclease/angiogenin inhibitor 1 0.366623
NADK NAD kinase 0.365859
PPCS phosphopantothenoylcysteine synthetase 0.361277
CDS2 CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2 0.355944
SCARA3 scavenger receptor class A, member 3 0.355183
TAB1 TGF-beta activated kinase 1/MAP3K7 binding protein 1 0.354422
POGK pogo transposable element with KRAB domain 0.354042
CDIP1 cell death-inducing p53 target 1 0.352901
MCM8 minichromosome maintenance complex component 8 0.348725
MON1A MON1 secretory trafficking family member A 0.345692
IPP intracisternal A particle-promoted polypeptide 0.345692
PLA2G1B phospholipase A2, group IB (pancreas) 0.343042
MOSPD3 motile sperm domain containing 3 0.342285
FDPS farnesyl diphosphate synthase 0.340395
NFU1 NFU1 iron-sulfur cluster scaffold 0.333225
DHRS2 dehydrogenase/reductase (SDR family) member 2 0.331342
OR2AG1 olfactory receptor, family 2, subfamily AG, member 1 (gene/pseudogene) 0.330966
CGA glycoprotein hormones, alpha polypeptide 0.325702
PNPT1 polyribonucleotide nucleotidyltransferase 1 0.321201
PRRC2A proline-rich coiled-coil 2A 0.31783
STOM stomatin 0.317456
PSG1 pregnancy specific beta-1-glycoprotein 1 0.310358
APEH acylaminoacyl-peptide hydrolase 0.302912
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 0.29994
CMAS cytidine monophosphate N-acetylneuraminic acid synthetase 0.298455
PPP1R8 protein phosphatase 1, regulatory subunit 8 0.296601
SRA1 steroid receptor RNA activator 1 0.29623
NNT nicotinamide nucleotide transhydrogenase 0.294748
CA2 carbonic anhydrase II 0.294007
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.291787
CALM3 calmodulin 3 (phosphorylase kinase, delta) 0.289569
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.289199
CALM1 calmodulin 1 (phosphorylase kinase, delta) 0.289199
NCR3 natural cytotoxicity triggering receptor 3 0.287721
CSN2 casein beta 0.285138
GPANK1 G patch domain and ankyrin repeats 1 0.282189
SCNN1A sodium channel, non voltage gated 1 alpha subunit 0.280349
MN1 meningioma (disrupted in balanced translocation) 1 0.277774
SLC25A3 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 0.275936
CAMTA1 calmodulin binding transcription activator 1 0.275569
RBBP9 retinoblastoma binding protein 9 0.275202
SMPX small muscle protein, X-linked 0.274468
GGPS1 geranylgeranyl diphosphate synthase 1 0.273734
ATP5J ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 0.270434
SPTA1 spectrin, alpha, erythrocytic 1 0.270068
LPO lactoperoxidase 0.256925
ME1 malic enzyme 1, NADP(+)-dependent, cytosolic 0.256561
OVGP1 oviductal glycoprotein 1, 120kDa 0.256197
GLDC glycine dehydrogenase (decarboxylating) 0.25547
EIF5A eukaryotic translation initiation factor 5A 0.253653
C3ORF18 chromosome 3 open reading frame 18 0.249664
SLC35B2 solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2 0.248578
NDUFA1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1, 7.5kDa 0.246769
CCDC62 coiled-coil domain containing 62 0.246046
TCEA2 transcription elongation factor A (SII), 2 0.24424
RPS19 ribosomal protein S19 0.243879
HSPB8 heat shock 22kDa protein 8 0.239916
RPS2 ribosomal protein S2 0.238119
CTU1 cytosolic thiouridylase subunit 1 0.235966
AP2B1 adaptor-related protein complex 2, beta 1 subunit 0.233101
GNAL guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type 0.232386
RPL22 ribosomal protein L22 0.231315
CLCN2 chloride channel, voltage-sensitive 2 0.231315
PGK1 phosphoglycerate kinase 1 0.228819
PRSS30P protease, serine, 30, pseudogene 0.228819
PECR peroxisomal trans-2-enoyl-CoA reductase 0.227041
JTB jumping translocation breakpoint 0.224558
RNASEH2A ribonuclease H2, subunit A 0.22279
MIDN midnolin 0.221378
SHMT1 serine hydroxymethyltransferase 1 (soluble) 0.220321
MB myoglobin 0.216111
RPS18P12 ribosomal protein S18 pseudogene 12 0.215412
FTL ferritin, light polypeptide 0.215063
DYNLL1 dynein, light chain, LC8-type 1 0.213322
PATZ1 POZ (BTB) and AT hook containing zinc finger 1 0.213322
ADRA1D adrenoceptor alpha 1D 0.213322
FTH1 ferritin, heavy polypeptide 1 0.213322
PIF1 PIF1 5'-to-3' DNA helicase 0.211067
ATP5B ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 0.209513
RBSN rabenosyn, RAB effector 0.209513
RNF19B ring finger protein 19B 0.208481
SCNN1B sodium channel, non voltage gated 1 beta subunit 0.208137
RPS18 ribosomal protein S18 0.208137
GPX5 glutathione peroxidase 5 0.206082
ARHGEF19 Rho guanine nucleotide exchange factor (GEF) 19 0.20574
KCNK1 potassium channel, two pore domain subfamily K, member 1 0.205059
ALLC allantoicase 0.203022
TYRL tyrosinase-like (pseudogene) 0.203022
IDH2 isocitrate dehydrogenase 2 (NADP+), mitochondrial 0.201335
CA1 carbonic anhydrase I 0.199993
CALU calumenin 0.199659
NDUFA13 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13 0.198325
ME3 malic enzyme 3, NADP(+)-dependent, mitochondrial 0.198325
PIN1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 0.197993
FPGT fucose-1-phosphate guanylyltransferase 0.19601
MYB v-myb avian myeloblastosis viral oncogene homolog 0.19601
ASL argininosuccinate lyase 0.195025
C1ORF167 chromosome 1 open reading frame 167 0.194371
HLA-DRB5 major histocompatibility complex, class II, DR beta 5 0.192423
APC2 adenomatosis polyposis coli 2 0.192423
STK16 serine/threonine kinase 16 0.187646
NVL nuclear VCP-like 0.187489
FLT1 fms-related tyrosine kinase 1 0.18702
LARS2 leucyl-tRNA synthetase 2, mitochondrial 0.183025
PRAC1 prostate cancer susceptibility candidate 1 0.181823
PRPF40B PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae) 0.180634
IGHG1 immunoglobulin heavy constant gamma 1 (G1m marker) 0.178588
TBX15 T-box 15 0.176587
PGAP3 post-GPI attachment to proteins 3 0.175605
SKIV2L superkiller viralicidic activity 2-like (S. cerevisiae) 0.175326
MSRA methionine sulfoxide reductase A 0.174911
RHOA ras homolog family member A 0.173003
PLCE1 phospholipase C, epsilon 1 0.171937
LRP10 low density lipoprotein receptor-related protein 10 0.171673
PDCL2 phosducin-like 2 0.169859
IMPACT impact RWD domain protein 0.168349
FCGR3B Fc fragment of IgG, low affinity IIIb, receptor (CD16b) 0.166405
GPX4 glutathione peroxidase 4 0.165231
CPEB1 cytoplasmic polyadenylation element binding protein 1 0.165
PFKL phosphofructokinase, liver 0.164089
HOXC6 homeobox C6 0.163865
KMT2A lysine (K)-specific methyltransferase 2A 0.16342
DRAP1 DR1-associated protein 1 (negative cofactor 2 alpha) 0.16138
PNKD paroxysmal nonkinesigenic dyskinesia 0.160456
GPX1 glutathione peroxidase 1 0.159462
ALDOC aldolase C, fructose-bisphosphate 0.159462
FBP2 fructose-1,6-bisphosphatase 2 0.158692
LRRC4C leucine rich repeat containing 4C 0.158129
RNF6 ring finger protein (C3H2C3 type) 6 0.157218
PDCL3 phosducin-like 3 0.149171
FBLIM1 filamin binding LIM protein 1 0.147533
CNDP2 CNDP dipeptidase 2 (metallopeptidase M20 family) 0.143575
SIX2 SIX homeobox 2 0.1433
C21ORF2 chromosome 21 open reading frame 2 0.143257
NCF4 neutrophil cytosolic factor 4, 40kDa 0.142775
ZNF79 zinc finger protein 79 0.142365
SLC26A6 solute carrier family 26 (anion exchanger), member 6 0.142276
CPLX1 complexin 1 0.141091
ADH1A alcohol dehydrogenase 1A (class I), alpha polypeptide 0.141043
ATPIF1 ATPase inhibitory factor 1 0.140955
LHB luteinizing hormone beta polypeptide 0.14084
NFYB nuclear transcription factor Y, beta 0.140415
CHL1 cell adhesion molecule L1-like 0.140303
SCX scleraxis basic helix-loop-helix transcription factor 0.139819
NFYA nuclear transcription factor Y, alpha 0.139569
MSH2 mutS homolog 2 0.139456
SLC27A1 solute carrier family 27 (fatty acid transporter), member 1 0.138879
NBPF10 neuroblastoma breakpoint family, member 10 0.138397
PYGB phosphorylase, glycogen; brain 0.136521
PYGL phosphorylase, glycogen, liver 0.136506
TES testin LIM domain protein 0.136491
PYGM phosphorylase, glycogen, muscle 0.136414