transcription by RNA polymerase II Gene Set

Dataset GO Biological Process Annotations 2023
Category structural or functional annotations
Type biological process
Description The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). (Gene Ontology, GO_0006366)
External Link http://amigo.geneontology.org/amigo/term/GO_0006366
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Genes

193 genes participating in the transcription by RNA polymerase II biological process from the curated GO Biological Process Annotations 2023 dataset.

Symbol Name
ABT1 activator of basal transcription 1
ADRM1 adhesion regulating molecule 1
ANXA2 annexin A2
ARRB2 arrestin, beta 2
ATF4 activating transcription factor 4
C5AR1 complement component 5a receptor 1
CBFB core-binding factor, beta subunit
CCDC124 coiled-coil domain containing 124
CCNH cyclin H
CCNK cyclin K
CCNT1 cyclin T1
CCNT2 cyclin T2
CDC73 cell division cycle 73
CDK12 cyclin-dependent kinase 12
CDK7 cyclin-dependent kinase 7
CDK9 cyclin-dependent kinase 9
CEBPD CCAAT/enhancer binding protein (C/EBP), delta
COPS2 COP9 signalosome subunit 2
CREB1 cAMP responsive element binding protein 1
CTDP1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1
CTR9 CTR9, Paf1/RNA polymerase II complex component
CYP27B1 cytochrome P450, family 27, subfamily B, polypeptide 1
DDX21 DEAD (Asp-Glu-Ala-Asp) box helicase 21
DEAF1 DEAF1 transcription factor
DEK DEK proto-oncogene
DPEP1 dipeptidase 1 (renal)
DRAP1 DR1-associated protein 1 (negative cofactor 2 alpha)
DTX1 deltex 1, E3 ubiquitin ligase
E2F2 E2F transcription factor 2
E2F3 E2F transcription factor 3
EAF2 ELL associated factor 2
ELL elongation factor RNA polymerase II
ELL2 elongation factor, RNA polymerase II, 2
ELL3 elongation factor RNA polymerase II-like 3
ELOA elongin A
ELOB elongin B
ELOC elongin C
ELOF1 elongation factor 1 homolog (S. cerevisiae)
ELP2 elongator acetyltransferase complex subunit 2
ELP4 elongator acetyltransferase complex subunit 4
ERCC2 excision repair cross-complementation group 2
ERCC3 excision repair cross-complementation group 3
ERCC6 excision repair cross-complementation group 6
ETV1 ets variant 1
ETV7 ets variant 7
FAM170A family with sequence similarity 170, member A
FOXE1 forkhead box E1
FOXE3 forkhead box E3
GCM1 glial cells missing homolog 1 (Drosophila)
GCM2 glial cells missing homolog 2 (Drosophila)
GLIS3 GLIS family zinc finger 3
GMEB2 glucocorticoid modulatory element binding protein 2
GTF2A1 general transcription factor IIA, 1, 19/37kDa
GTF2A1L general transcription factor IIA, 1-like
GTF2A2 general transcription factor IIA, 2, 12kDa
GTF2B general transcription factor IIB
GTF2E1 general transcription factor IIE, polypeptide 1, alpha 56kDa
GTF2E2 general transcription factor IIE, polypeptide 2, beta 34kDa
GTF2F1 general transcription factor IIF, polypeptide 1, 74kDa
GTF2F2 general transcription factor IIF, polypeptide 2, 30kDa
GTF2H1 general transcription factor IIH, polypeptide 1, 62kDa
GTF2H2 general transcription factor IIH, polypeptide 2, 44kDa
GTF2H3 general transcription factor IIH, polypeptide 3, 34kDa
GTF2H4 general transcription factor IIH, polypeptide 4, 52kDa
GTF2H5 general transcription factor IIH, polypeptide 5
HLTF helicase-like transcription factor
HSF2BP heat shock transcription factor 2 binding protein
ICE1 interactor of little elongation complex ELL subunit 1
ICE2 interactor of little elongation complex ELL subunit 2
IRF9 interferon regulatory factor 9
KLF13 Kruppel-like factor 13
LEO1 Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
LHX1 LIM homeobox 1
MAF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog
MAZ MYC-associated zinc finger protein (purine-binding transcription factor)
MED1 mediator complex subunit 1
MED16 mediator complex subunit 16
MED17 mediator complex subunit 17
MED18 mediator complex subunit 18
MED20 mediator complex subunit 20
MED23 mediator complex subunit 23
MED26 mediator complex subunit 26
MED27 mediator complex subunit 27
MED4 mediator complex subunit 4
MED7 mediator complex subunit 7
MNAT1 MNAT CDK-activating kinase assembly factor 1
MNT MAX network transcriptional repressor
NCBP1 nuclear cap binding protein subunit 1, 80kDa
NCBP2 nuclear cap binding protein subunit 2, 20kDa
NCBP3 nuclear cap binding subunit 3
NCOA1 nuclear receptor coactivator 1
NCOA2 nuclear receptor coactivator 2
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive
NFE2L3 nuclear factor, erythroid 2-like 3
NFIC nuclear factor I/C (CCAAT-binding transcription factor)
NFIX nuclear factor I/X (CCAAT-binding transcription factor)
NFKB1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1
NFX1 nuclear transcription factor, X-box binding 1
NFYA nuclear transcription factor Y, alpha
NKX2-8 NK2 homeobox 8
NKX3-2 NK3 homeobox 2
NOCT nocturnin
NR1H2 nuclear receptor subfamily 1, group H, member 2
NR1H3 nuclear receptor subfamily 1, group H, member 3
PAAF1 proteasomal ATPase-associated factor 1
PARP1 poly (ADP-ribose) polymerase 1
PAX1 paired box 1
PAX5 paired box 5
PBRM1 polybromo 1
PCF11 PCF11 cleavage and polyadenylation factor subunit
PCID2 PCI domain containing 2
PEX2 peroxisomal biogenesis factor 2
PIR pirin (iron-binding nuclear protein)
PKNOX1 PBX/knotted 1 homeobox 1
PMF1 polyamine-modulated factor 1
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
POLR2B polymerase (RNA) II (DNA directed) polypeptide B, 140kDa
POLR2C polymerase (RNA) II (DNA directed) polypeptide C, 33kDa
POLR2D polymerase (RNA) II (DNA directed) polypeptide D
POLR2E polymerase (RNA) II (DNA directed) polypeptide E, 25kDa
POLR2F polymerase (RNA) II (DNA directed) polypeptide F
POLR2G polymerase (RNA) II (DNA directed) polypeptide G
POLR2H polymerase (RNA) II (DNA directed) polypeptide H
POLR2I polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa
POLR2J polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa
POLR2K polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa
POLR2L polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa
PPARG peroxisome proliferator-activated receptor gamma
PPARGC1A peroxisome proliferator-activated receptor gamma, coactivator 1 alpha
RARA retinoic acid receptor, alpha
RBMX RNA binding motif protein, X-linked
RPRD1A regulation of nuclear pre-mRNA domain containing 1A
RPRD1B regulation of nuclear pre-mRNA domain containing 1B
RREB1 ras responsive element binding protein 1
RTF1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
RXRA retinoid X receptor, alpha
RXRB retinoid X receptor, beta
S100A10 S100 calcium binding protein A10
SCAF8 SR-related CTD-associated factor 8
SETD2 SET domain containing 2
SETX senataxin
SNAPC1 small nuclear RNA activating complex, polypeptide 1, 43kDa
SNAPC2 small nuclear RNA activating complex, polypeptide 2, 45kDa
SNAPC3 small nuclear RNA activating complex, polypeptide 3, 50kDa
SNAPC4 small nuclear RNA activating complex, polypeptide 4, 190kDa
SNAPC5 small nuclear RNA activating complex, polypeptide 5, 19kDa
SOX5 SRY (sex determining region Y)-box 5
SRCAP Snf2-related CREBBP activator protein
SSU72 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae)
SUB1 SUB1 homolog (S. cerevisiae)
SUPT16H suppressor of Ty 16 homolog (S. cerevisiae)
SUPT4H1 suppressor of Ty 4 homolog 1 (S. cerevisiae)
SUPT5H suppressor of Ty 5 homolog (S. cerevisiae)
SUPT6H suppressor of Ty 6 homolog (S. cerevisiae)
TAF1 TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa
TAF10 TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa
TAF11 TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa
TAF12 TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa
TAF13 TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa
TAF1A TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa
TAF1C TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa
TAF2 TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa
TAF3 TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa
TAF4 TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa
TAF4B TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa
TAF5 TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa
TAF5L TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa
TAF6 TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
TAF7 TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa
TAF8 TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa
TAF9 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa
TBP TATA box binding protein
TBPL1 TBP-like 1
TCEA1 transcription elongation factor A (SII), 1
TCEB3B transcription elongation factor B polypeptide 3B (elongin A2)
TCFL5 transcription factor-like 5 (basic helix-loop-helix)
TFCP2 transcription factor CP2
TFDP1 transcription factor Dp-1
THRA thyroid hormone receptor, alpha
THRB thyroid hormone receptor, beta
TRIM24 tripartite motif containing 24
TRIP11 thyroid hormone receptor interactor 11
TRIP13 thyroid hormone receptor interactor 13
TSC22D1 TSC22 domain family, member 1
WDR61 WD repeat domain 61
XBP1 X-box binding protein 1
XRN2 5'-3' exoribonuclease 2
YBX2 Y box binding protein 2
ZBTB1 zinc finger and BTB domain containing 1
ZBTB7B zinc finger and BTB domain containing 7B
ZC3H8 zinc finger CCCH-type containing 8
ZNF141 zinc finger protein 141
ZNF345 zinc finger protein 345