transcription cis-regulatory region binding Gene Set

Dataset GO Molecular Function Annotations 2023
Category structural or functional annotations
Type biological process
Description Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon. (Gene Ontology, GO_0000976)
External Link http://amigo.geneontology.org/amigo/term/GO:0000976
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Genes

475 genes performing the transcription cis-regulatory region binding molecular function from the curated GO Molecular Function Annotations 2023 dataset.

Symbol Name
ACTN4 actinin, alpha 4
ADNP activity-dependent neuroprotector homeobox
AEBP1 AE binding protein 1
AGO1 argonaute RISC catalytic component 1
AGO2 argonaute RISC catalytic component 2
AHR aryl hydrocarbon receptor
AIRE autoimmune regulator
AKR1B1 aldo-keto reductase family 1, member B1 (aldose reductase)
ALX1 ALX homeobox 1
ALX3 ALX homeobox 3
ALX4 ALX homeobox 4
ANKRD23 ankyrin repeat domain 23
ARID4A AT rich interactive domain 4A (RBP1-like)
ARID4B AT rich interactive domain 4B (RBP1-like)
ARID5A AT rich interactive domain 5A (MRF1-like)
ARID5B AT rich interactive domain 5B (MRF1-like)
ARNT aryl hydrocarbon receptor nuclear translocator
ARNTL aryl hydrocarbon receptor nuclear translocator-like
ASCL1 achaete-scute family bHLH transcription factor 1
ASCL2 achaete-scute family bHLH transcription factor 2
ASCL3 achaete-scute family bHLH transcription factor 3
ASCL4 achaete-scute family bHLH transcription factor 4
ASCL5 achaete-scute family bHLH transcription factor 5
ASH2L ash2 (absent, small, or homeotic)-like (Drosophila)
ATF1 activating transcription factor 1
ATF2 activating transcription factor 2
ATF3 activating transcription factor 3
ATF4 activating transcription factor 4
ATF5 activating transcription factor 5
ATF6 activating transcription factor 6
ATF6B activating transcription factor 6 beta
ATF7 activating transcription factor 7
ATMIN ATM interactor
ATOH7 atonal homolog 7 (Drosophila)
AZF1 azoospermia factor 1
BAHD1 bromo adjacent homology domain containing 1
BARHL1 BarH-like homeobox 1
BARHL2 BarH-like homeobox 2
BARX1 BARX homeobox 1
BARX2 BARX homeobox 2
BASP1 brain abundant, membrane attached signal protein 1
BBX bobby sox homolog (Drosophila)
BCOR BCL6 corepressor
BHLHA9 basic helix-loop-helix family, member a9
BRCA1 breast cancer 1, early onset
BRD4 bromodomain containing 4
BRD7 bromodomain containing 7
CALCOCO1 calcium binding and coiled-coil domain 1
CARM1 coactivator-associated arginine methyltransferase 1
CASZ1 castor zinc finger 1
CDC5L cell division cycle 5-like
CDK5RAP2 CDK5 regulatory subunit associated protein 2
CDX1 caudal type homeobox 1
CDX2 caudal type homeobox 2
CDX4 caudal type homeobox 4
CEBPA CCAAT/enhancer binding protein (C/EBP), alpha
CEBPB CCAAT/enhancer binding protein (C/EBP), beta
CHD3 chromodomain helicase DNA binding protein 3
CIC capicua transcriptional repressor
CIITA class II, major histocompatibility complex, transactivator
CREB3 cAMP responsive element binding protein 3
CREB3L1 cAMP responsive element binding protein 3-like 1
CREB3L2 cAMP responsive element binding protein 3-like 2
CREB3L3 cAMP responsive element binding protein 3-like 3
CREBRF CREB3 regulatory factor
CREM cAMP responsive element modulator
CRX cone-rod homeobox
CRY2 cryptochrome circadian clock 2
CTCF CCCTC-binding factor (zinc finger protein)
CTCFL CCCTC-binding factor (zinc finger protein)-like
CUX1 cut-like homeobox 1
CUX2 cut-like homeobox 2
CYP1A1 cytochrome P450, family 1, subfamily A, polypeptide 1
DACH1 dachshund family transcription factor 1
DBP D site of albumin promoter (albumin D-box) binding protein
DDIT3 DNA-damage-inducible transcript 3
DEAF1 DEAF1 transcription factor
DHX36 DEAH (Asp-Glu-Ala-His) box polypeptide 36
DLX5 distal-less homeobox 5
DMBX1 diencephalon/mesencephalon homeobox 1
DMRT1 doublesex and mab-3 related transcription factor 1
DRAP1 DR1-associated protein 1 (negative cofactor 2 alpha)
DRGX dorsal root ganglia homeobox
DUX3 double homeobox 3
DUX4L1 double homeobox 4 like 1
DUX4L2 double homeobox 4 like 2
DUX4L3 double homeobox 4 like 3
DUX4L4 double homeobox 4 like 4
DUX4L5 double homeobox 4 like 5
DUX4L6 double homeobox 4 like 6
DUX4L7 double homeobox 4 like 7
DUX4L9 double homeobox 4 like 9
DUX5 double homeobox 5
DUXA double homeobox A
DUXB double homeobox B
E2F1 E2F transcription factor 1
E2F2 E2F transcription factor 2
E2F3 E2F transcription factor 3
E2F6 E2F transcription factor 6
E2F7 E2F transcription factor 7
E2F8 E2F transcription factor 8
E4F1 E4F transcription factor 1
EGR1 early growth response 1
EGR2 early growth response 2
ELK1 ELK1, member of ETS oncogene family
ELK3 ELK3, ETS-domain protein (SRF accessory protein 2)
ELL elongation factor RNA polymerase II
ELL2 elongation factor, RNA polymerase II, 2
ELL3 elongation factor RNA polymerase II-like 3
ENO1 enolase 1, (alpha)
EPAS1 endothelial PAS domain protein 1
ERBB4 erb-b2 receptor tyrosine kinase 4
ESRRB estrogen-related receptor beta
ESX1 ESX homeobox 1
ETS1 v-ets avian erythroblastosis virus E26 oncogene homolog 1
ETV5 ets variant 5
ETV6 ets variant 6
ETV7 ets variant 7
FERD3L Fer3-like bHLH transcription factor
FIGLA folliculogenesis specific basic helix-loop-helix
FLI1 Fli-1 proto-oncogene, ETS transcription factor
FOS FBJ murine osteosarcoma viral oncogene homolog
FOSL2 FOS-like antigen 2
FOXA1 forkhead box A1
FOXA2 forkhead box A2
FOXA3 forkhead box A3
FOXC1 forkhead box C1
FOXC2 forkhead box C2
FOXD3 forkhead box D3
FOXF1 forkhead box F1
FOXF2 forkhead box F2
FOXH1 forkhead box H1
FOXI1 forkhead box I1
FOXJ1 forkhead box J1
FOXK1 forkhead box K1
FOXK2 forkhead box K2
FOXM1 forkhead box M1
FOXN1 forkhead box N1
FOXN2 forkhead box N2
FOXN3 forkhead box N3
FOXN4 forkhead box N4
FOXO3 forkhead box O3
FOXP1 forkhead box P1
GABPA GA binding protein transcription factor, alpha subunit 60kDa
GABPB1 GA binding protein transcription factor, beta subunit 1
GATA1 GATA binding protein 1 (globin transcription factor 1)
GATA3 GATA binding protein 3
GATA4 GATA binding protein 4
GATA5 GATA binding protein 5
GATA6 GATA binding protein 6
GBX1 gastrulation brain homeobox 1
GBX2 gastrulation brain homeobox 2
GFI1 growth factor independent 1 transcription repressor
GLI1 GLI family zinc finger 1
GLI3 GLI family zinc finger 3
GLIS2 GLIS family zinc finger 2
GRHL1 grainyhead-like 1 (Drosophila)
GRHL2 grainyhead-like 2 (Drosophila)
HAND1 heart and neural crest derivatives expressed 1
HAND2 heart and neural crest derivatives expressed 2
HDAC1 histone deacetylase 1
HDAC4 histone deacetylase 4
HDAC5 histone deacetylase 5
HESX1 HESX homeobox 1
HHEX hematopoietically expressed homeobox
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)
HIF3A hypoxia inducible factor 3, alpha subunit
HINFP histone H4 transcription factor
HMGA1 high mobility group AT-hook 1
HMGA2 high mobility group AT-hook 2
HMGB1 high mobility group box 1
HMGB2 high mobility group box 2
HMX1 H6 family homeobox 1
HMX2 H6 family homeobox 2
HMX3 H6 family homeobox 3
HNF1A HNF1 homeobox A
HNF4A hepatocyte nuclear factor 4, alpha
HNRNPL heterogeneous nuclear ribonucleoprotein L
HOXB1 homeobox B1
HOXB8 homeobox B8
HOXC10 homeobox C10
HOXC13 homeobox C13
HOXC8 homeobox C8
HOXD3 homeobox D3
HOXD4 homeobox D4
HOXD8 homeobox D8
HOXD9 homeobox D9
HSF1 heat shock transcription factor 1
HSF2 heat shock transcription factor 2
IKZF5 IKAROS family zinc finger 5 (Pegasus)
IRF1 interferon regulatory factor 1
IRF2 interferon regulatory factor 2
ISL1 ISL LIM homeobox 1
ISL2 ISL LIM homeobox 2
ISX intestine-specific homeobox
JUN jun proto-oncogene
JUND jun D proto-oncogene
KCNH2 potassium channel, voltage gated eag related subfamily H, member 2
KDM5A lysine (K)-specific demethylase 5A
KIAA2018 KIAA2018
KLF1 Kruppel-like factor 1 (erythroid)
KLF10 Kruppel-like factor 10
KLF11 Kruppel-like factor 11
KLF15 Kruppel-like factor 15
KLF17 Kruppel-like factor 17
KLF4 Kruppel-like factor 4 (gut)
KMT2D lysine (K)-specific methyltransferase 2D
LEF1 lymphoid enhancer-binding factor 1
LHX1 LIM homeobox 1
LHX2 LIM homeobox 2
LHX3 LIM homeobox 3
LHX4 LIM homeobox 4
LHX5 LIM homeobox 5
LHX6 LIM homeobox 6
LHX8 LIM homeobox 8
LHX9 LIM homeobox 9
LMX1A LIM homeobox transcription factor 1, alpha
LMX1B LIM homeobox transcription factor 1, beta
LONP1 lon peptidase 1, mitochondrial
MACROH2A1 macroH2A.1 histone
MACROH2A2 macroH2A.2 histone
MAFK v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog K
MAX MYC associated factor X
MEF2A myocyte enhancer factor 2A
MEF2C myocyte enhancer factor 2C
MEF2D myocyte enhancer factor 2D
MELTF melanotransferrin
MEN1 multiple endocrine neoplasia I
MESP1 mesoderm posterior basic helix-loop-helix transcription factor 1
MIXL1 Mix paired-like homeobox
MLX MLX, MAX dimerization protein
MLXIP MLX interacting protein
MMP12 matrix metallopeptidase 12
MNT MAX network transcriptional repressor
MSC musculin
MSX1 msh homeobox 1
MSX2 msh homeobox 2
MTERF3 mitochondrial transcription termination factor 3
MXI1 MAX interactor 1, dimerization protein
MYC v-myc avian myelocytomatosis viral oncogene homolog
MYOD1 myogenic differentiation 1
MYOG myogenin (myogenic factor 4)
MZF1 myeloid zinc finger 1
NANOG Nanog homeobox
NCOR1 nuclear receptor corepressor 1
NFE2 nuclear factor, erythroid 2
NFE2L2 nuclear factor, erythroid 2-like 2
NFE4 nuclear factor, erythroid 4
NFIL3 nuclear factor, interleukin 3 regulated
NFKB1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1
NFX1 nuclear transcription factor, X-box binding 1
NFXL1 nuclear transcription factor, X-box binding-like 1
NFYA nuclear transcription factor Y, alpha
NFYB nuclear transcription factor Y, beta
NFYC nuclear transcription factor Y, gamma
NHLH1 nescient helix loop helix 1
NKX2-1 NK2 homeobox 1
NKX2-2 NK2 homeobox 2
NKX2-5 NK2 homeobox 5
NKX3-1 NK3 homeobox 1
NPAS1 neuronal PAS domain protein 1
NPAS3 neuronal PAS domain protein 3
NPAS4 neuronal PAS domain protein 4
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin)
NR1D1 nuclear receptor subfamily 1, group D, member 1
NR1H3 nuclear receptor subfamily 1, group H, member 3
NR1H4 nuclear receptor subfamily 1, group H, member 4
NR1I2 nuclear receptor subfamily 1, group I, member 2
NR1I3 nuclear receptor subfamily 1, group I, member 3
NR2C2 nuclear receptor subfamily 2, group C, member 2
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)
NR5A1 nuclear receptor subfamily 5, group A, member 1
NR5A2 nuclear receptor subfamily 5, group A, member 2
OSR2 odd-skipped related transciption factor 2
OTP orthopedia homeobox
OXSR1 oxidative stress responsive 1
PARK7 parkinson protein 7
PAX2 paired box 2
PAX6 paired box 6
PAX8 paired box 8
PBX1 pre-B-cell leukemia homeobox 1
PBX2P1 pre-B-cell leukemia homeobox 2 pseudogene 1
PER1 period circadian clock 1
PER2 period circadian clock 2
PER3 period circadian clock 3
PHOX2A paired-like homeobox 2a
PHOX2B paired-like homeobox 2b
PITX2 paired-like homeodomain 2
PLAGL1 pleiomorphic adenoma gene-like 1
POLRMT polymerase (RNA) mitochondrial (DNA directed)
POU2F2 POU class 2 homeobox 2
POU5F1 POU class 5 homeobox 1
PPARG peroxisome proliferator-activated receptor gamma
PRDM14 PR domain containing 14
PRDM16 PR domain containing 16
PRDM2 PR domain containing 2, with ZNF domain
PRDM5 PR domain containing 5
PRDM9 PR domain containing 9
PRDX5 peroxiredoxin 5
PROX1 prospero homeobox 1
PSG1 pregnancy specific beta-1-glycoprotein 1
PTF1A pancreas specific transcription factor, 1a
PURA purine-rich element binding protein A
PURB purine-rich element binding protein B
PURG purine-rich element binding protein G
RARA retinoic acid receptor, alpha
RB1 retinoblastoma 1
RBBP5 retinoblastoma binding protein 5
RBL1 retinoblastoma-like 1
RBL2 retinoblastoma-like 2
RELA v-rel avian reticuloendotheliosis viral oncogene homolog A
REST RE1-silencing transcription factor
RFX3 regulatory factor X, 3 (influences HLA class II expression)
RFX5 regulatory factor X, 5 (influences HLA class II expression)
RFX6 regulatory factor X, 6
RFXANK regulatory factor X-associated ankyrin-containing protein
RFXAP regulatory factor X-associated protein
RHOXF1 Rhox homeobox family, member 1
RHOXF2 Rhox homeobox family, member 2
RHOXF2B Rhox homeobox family, member 2B
RNF10 ring finger protein 10
RORA RAR-related orphan receptor A
RPS3 ribosomal protein S3
RREB1 ras responsive element binding protein 1
RUNX1 runt-related transcription factor 1
RUNX3 runt-related transcription factor 3
RXRA retinoid X receptor, alpha
RXRB retinoid X receptor, beta
SALL2 spalt-like transcription factor 2
SATB1 SATB homeobox 1
SATB2 SATB homeobox 2
SCRT1 scratch family zinc finger 1
SCRT2 scratch family zinc finger 2
SCX scleraxis basic helix-loop-helix transcription factor
SETX senataxin
SFPQ splicing factor proline/glutamine-rich
SIM1 single-minded family bHLH transcription factor 1
SIM2 single-minded family bHLH transcription factor 2
SIX1 SIX homeobox 1
SMAD2 SMAD family member 2
SMAD3 SMAD family member 3
SMAD4 SMAD family member 4
SMAD6 SMAD family member 6
SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
SNAI1 snail family zinc finger 1
SNAI2 snail family zinc finger 2
SNAPC3 small nuclear RNA activating complex, polypeptide 3, 50kDa
SNCA synuclein, alpha (non A4 component of amyloid precursor)
SOX10 SRY (sex determining region Y)-box 10
SOX11 SRY (sex determining region Y)-box 11
SOX12 SRY (sex determining region Y)-box 12
SOX13 SRY (sex determining region Y)-box 13
SOX17 SRY (sex determining region Y)-box 17
SOX18 SRY (sex determining region Y)-box 18
SOX2 SRY (sex determining region Y)-box 2
SOX4 SRY (sex determining region Y)-box 4
SOX5 SRY (sex determining region Y)-box 5
SOX6 SRY (sex determining region Y)-box 6
SOX7 SRY (sex determining region Y)-box 7
SOX9 SRY (sex determining region Y)-box 9
SPI1 Spi-1 proto-oncogene
SREBF1 sterol regulatory element binding transcription factor 1
STAT1 signal transducer and activator of transcription 1, 91kDa
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor)
STAT6 signal transducer and activator of transcription 6, interleukin-4 induced
STOX1 storkhead box 1
STOX2 storkhead box 2
SUV39H1 suppressor of variegation 3-9 homolog 1 (Drosophila)
SUV39H2 suppressor of variegation 3-9 homolog 2 (Drosophila)
TAF2 TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa
TAF4 TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa
TAF7 TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa
TAF9 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa
TAL1 T-cell acute lymphocytic leukemia 1
TBL1X transducin (beta)-like 1X-linked
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1
TBP TATA box binding protein
TBX18 T-box 18
TBX20 T-box 20
TBX21 T-box 21
TBX22 T-box 22
TCF12 transcription factor 12
TCF15 transcription factor 15 (basic helix-loop-helix)
TCF21 transcription factor 21
TCF23 transcription factor 23
TCF24 transcription factor 24
TCF3 transcription factor 3
TCF7 transcription factor 7 (T-cell specific, HMG-box)
TCF7L2 transcription factor 7-like 2 (T-cell specific, HMG-box)
TFAM transcription factor A, mitochondrial
TFAP2A transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)
TFAP2B transcription factor AP-2 beta (activating enhancer binding protein 2 beta)
TFAP2C transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)
TFAP2D transcription factor AP-2 delta (activating enhancer binding protein 2 delta)
TFAP2E transcription factor AP-2 epsilon (activating enhancer binding protein 2 epsilon)
TFAP4 transcription factor AP-4 (activating enhancer binding protein 4)
TFCP2 transcription factor CP2
TFDP1 transcription factor Dp-1
TFDP2 transcription factor Dp-2 (E2F dimerization partner 2)
TFDP3 transcription factor Dp family, member 3
TFE3 transcription factor binding to IGHM enhancer 3
TFEB transcription factor EB
THRA thyroid hormone receptor, alpha
TIPARP TCDD-inducible poly(ADP-ribose) polymerase
TNF tumor necrosis factor
TP53 tumor protein p53
TP73 tumor protein p73
TRPS1 trichorhinophalangeal syndrome I
TWIST1 twist family bHLH transcription factor 1
TWIST2 twist family bHLH transcription factor 2
UBA2 ubiquitin-like modifier activating enzyme 2
UHRF1 ubiquitin-like with PHD and ring finger domains 1
VEZF1 vascular endothelial zinc finger 1
VSX1 visual system homeobox 1
VSX2 visual system homeobox 2
WT1 Wilms tumor 1
XBP1 X-box binding protein 1
XRCC5 X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)
XRCC6 X-ray repair complementing defective repair in Chinese hamster cells 6
XRN2 5'-3' exoribonuclease 2
YAP1 Yes-associated protein 1
YY1 YY1 transcription factor
YY2 YY2 transcription factor
ZBED2 zinc finger, BED-type containing 2
ZBED4 zinc finger, BED-type containing 4
ZBED6 zinc finger, BED-type containing 6
ZBTB10 zinc finger and BTB domain containing 10
ZBTB14 zinc finger and BTB domain containing 14
ZBTB17 zinc finger and BTB domain containing 17
ZBTB20 zinc finger and BTB domain containing 20
ZBTB4 zinc finger and BTB domain containing 4
ZBTB46 zinc finger and BTB domain containing 46
ZBTB48 zinc finger and BTB domain containing 48
ZBTB5 zinc finger and BTB domain containing 5
ZBTB8A zinc finger and BTB domain containing 8A
ZNF101 zinc finger protein 101
ZNF14 zinc finger protein 14
ZNF142 zinc finger protein 142
ZNF174 zinc finger protein 174
ZNF175 zinc finger protein 175
ZNF217 zinc finger protein 217
ZNF263 zinc finger protein 263
ZNF281 zinc finger protein 281
ZNF335 zinc finger protein 335
ZNF395 zinc finger protein 395
ZNF433 zinc finger protein 433
ZNF44 zinc finger protein 44
ZNF441 zinc finger protein 441
ZNF442 zinc finger protein 442
ZNF443 zinc finger protein 443
ZNF510 zinc finger protein 510
ZNF512B zinc finger protein 512B
ZNF513 zinc finger protein 513
ZNF516 zinc finger protein 516
ZNF517 zinc finger protein 517
ZNF518A zinc finger protein 518A
ZNF518B zinc finger protein 518B
ZNF563 zinc finger protein 563
ZNF568 zinc finger protein 568
ZNF57 zinc finger protein 57
ZNF579 zinc finger protein 579
ZNF589 zinc finger protein 589
ZNF625 zinc finger protein 625
ZNF627 zinc finger protein 627
ZNF639 zinc finger protein 639
ZNF658 zinc finger protein 658
ZNF696 zinc finger protein 696
ZNF700 zinc finger protein 700
ZNF709 zinc finger protein 709
ZNF746 zinc finger protein 746
ZNF791 zinc finger protein 791
ZNF799 zinc finger protein 799
ZNF823 zinc finger protein 823
ZNF844 zinc finger protein 844
ZNF878 zinc finger protein 878