transcription initiation at RNA polymerase II promoter Gene Set

Dataset GO Biological Process Annotations 2023
Category structural or functional annotations
Type biological process
Description Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription. (Gene Ontology, GO_0006367)
External Link http://amigo.geneontology.org/amigo/term/GO_0006367
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Genes

77 genes participating in the transcription initiation at RNA polymerase II promoter biological process from the curated GO Biological Process Annotations 2023 dataset.

Symbol Name
CCNH cyclin H
CDK7 cyclin-dependent kinase 7
CDK9 cyclin-dependent kinase 9
DR1 down-regulator of transcription 1, TBP-binding (negative cofactor 2)
E2F2 E2F transcription factor 2
E2F3 E2F transcription factor 3
ELOA elongin A
ELOB elongin B
ELOC elongin C
ERCC3 excision repair cross-complementation group 3
ESR1 estrogen receptor 1
GTF2A1 general transcription factor IIA, 1, 19/37kDa
GTF2A2 general transcription factor IIA, 2, 12kDa
GTF2B general transcription factor IIB
GTF2E1 general transcription factor IIE, polypeptide 1, alpha 56kDa
GTF2E2 general transcription factor IIE, polypeptide 2, beta 34kDa
GTF2F1 general transcription factor IIF, polypeptide 1, 74kDa
GTF2F2 general transcription factor IIF, polypeptide 2, 30kDa
GTF2H2 general transcription factor IIH, polypeptide 2, 44kDa
LOC102723526 uncharacterized LOC102723526
LOC391742 TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa pseudogene
LOC391746 TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa pseudogene
LOC646066 TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa pseudogene
LOC646103 TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa pseudogene
MAZ MYC-associated zinc finger protein (purine-binding transcription factor)
MED1 mediator complex subunit 1
MED10 mediator complex subunit 10
MED11 mediator complex subunit 11
MED14 mediator complex subunit 14
MED15 mediator complex subunit 15
MED16 mediator complex subunit 16
MED17 mediator complex subunit 17
MED18 mediator complex subunit 18
MED19 mediator complex subunit 19
MED20 mediator complex subunit 20
MED21 mediator complex subunit 21
MED22 mediator complex subunit 22
MED23 mediator complex subunit 23
MED26 mediator complex subunit 26
MED27 mediator complex subunit 27
MED28 mediator complex subunit 28
MED29 mediator complex subunit 29
MED30 mediator complex subunit 30
MED31 mediator complex subunit 31
MED4 mediator complex subunit 4
MED6 mediator complex subunit 6
MED7 mediator complex subunit 7
MED8 mediator complex subunit 8
MED9 mediator complex subunit 9
PAAF1 proteasomal ATPase-associated factor 1
POLR2D polymerase (RNA) II (DNA directed) polypeptide D
POLR2G polymerase (RNA) II (DNA directed) polypeptide G
POLR2I polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa
PPARGC1A peroxisome proliferator-activated receptor gamma, coactivator 1 alpha
TAF1 TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa
TAF10 TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa
TAF11 TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa
TAF11L11 TATA-box binding protein associated factor 11 like 11
TAF11L12 TATA-box binding protein associated factor 11 like 12
TAF11L13 TATA-box binding protein associated factor 11 like 13
TAF11L14 TATA-box binding protein associated factor 11 like 14
TAF11L9 TATA-box binding protein associated factor 11 like 9
TAF12 TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa
TAF13 TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa
TAF1L TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 210kDa-like
TAF2 TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa
TAF3 TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa
TAF4 TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa
TAF4B TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa
TAF5 TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa
TAF6 TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
TAF6L TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa
TAF7 TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa
TAF7L TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 50kDa
TAF8 TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa
TAF9 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa
TBP TATA box binding protein