transcription regulatory region nucleic acid binding Gene Set

Dataset GO Molecular Function Annotations 2023
Category structural or functional annotations
Type biological process
Description Interacting selectively and non-covalently with a nucleic acid region that regulates a nucleic acid-based process. Such processes include transcription, DNA replication, and DNA repair. (Gene Ontology, GO_0001067)
External Link http://amigo.geneontology.org/amigo/term/GO:0001067
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Genes

225 genes performing the transcription regulatory region nucleic acid binding molecular function from the curated GO Molecular Function Annotations 2023 dataset.

Symbol Name
AHR aryl hydrocarbon receptor
AKR1B1 aldo-keto reductase family 1, member B1 (aldose reductase)
ANKRD23 ankyrin repeat domain 23
ARID4A AT rich interactive domain 4A (RBP1-like)
ARID4B AT rich interactive domain 4B (RBP1-like)
ARID5A AT rich interactive domain 5A (MRF1-like)
ARID5B AT rich interactive domain 5B (MRF1-like)
ARNTL aryl hydrocarbon receptor nuclear translocator-like
ASH2L ash2 (absent, small, or homeotic)-like (Drosophila)
ATF3 activating transcription factor 3
ATF4 activating transcription factor 4
ATF5 activating transcription factor 5
ATF6 activating transcription factor 6
ATF6B activating transcription factor 6 beta
ATF7 activating transcription factor 7
ATMIN ATM interactor
ATOH7 atonal homolog 7 (Drosophila)
BAHD1 bromo adjacent homology domain containing 1
BASP1 brain abundant, membrane attached signal protein 1
BCOR BCL6 corepressor
BRCA1 breast cancer 1, early onset
BRD4 bromodomain containing 4
BRD7 bromodomain containing 7
CALCOCO1 calcium binding and coiled-coil domain 1
CARM1 coactivator-associated arginine methyltransferase 1
CDK5RAP2 CDK5 regulatory subunit associated protein 2
CDX1 caudal type homeobox 1
CEBPA CCAAT/enhancer binding protein (C/EBP), alpha
CEBPB CCAAT/enhancer binding protein (C/EBP), beta
CHD3 chromodomain helicase DNA binding protein 3
CIITA class II, major histocompatibility complex, transactivator
CREB3L1 cAMP responsive element binding protein 3-like 1
CREB3L2 cAMP responsive element binding protein 3-like 2
CREB3L3 cAMP responsive element binding protein 3-like 3
CRY2 cryptochrome circadian clock 2
CTCF CCCTC-binding factor (zinc finger protein)
CTCFL CCCTC-binding factor (zinc finger protein)-like
CYP1A1 cytochrome P450, family 1, subfamily A, polypeptide 1
DDIT3 DNA-damage-inducible transcript 3
DHX36 DEAH (Asp-Glu-Ala-His) box polypeptide 36
DHX9 DEAH (Asp-Glu-Ala-His) box helicase 9
DLX5 distal-less homeobox 5
DUX3 double homeobox 3
DUX4L1 double homeobox 4 like 1
DUX4L2 double homeobox 4 like 2
DUX4L3 double homeobox 4 like 3
DUX4L4 double homeobox 4 like 4
DUX4L5 double homeobox 4 like 5
DUX4L6 double homeobox 4 like 6
DUX4L7 double homeobox 4 like 7
DUX4L9 double homeobox 4 like 9
DUX5 double homeobox 5
DUXA double homeobox A
DUXB double homeobox B
EGR1 early growth response 1
EGR2 early growth response 2
ELK1 ELK1, member of ETS oncogene family
ERBB4 erb-b2 receptor tyrosine kinase 4
ETS1 v-ets avian erythroblastosis virus E26 oncogene homolog 1
ETV5 ets variant 5
FLI1 Fli-1 proto-oncogene, ETS transcription factor
FOS FBJ murine osteosarcoma viral oncogene homolog
FOXA1 forkhead box A1
FOXA2 forkhead box A2
FOXA3 forkhead box A3
FOXC1 forkhead box C1
FOXC2 forkhead box C2
FOXH1 forkhead box H1
FOXI1 forkhead box I1
FOXJ1 forkhead box J1
FOXK1 forkhead box K1
FOXK2 forkhead box K2
FOXN1 forkhead box N1
FOXO3 forkhead box O3
GABPA GA binding protein transcription factor, alpha subunit 60kDa
GABPB1 GA binding protein transcription factor, beta subunit 1
GATA1 GATA binding protein 1 (globin transcription factor 1)
GATA3 GATA binding protein 3
GATA4 GATA binding protein 4
GATA5 GATA binding protein 5
GATA6 GATA binding protein 6
GFI1 growth factor independent 1 transcription repressor
GLI1 GLI family zinc finger 1
GLIS2 GLIS family zinc finger 2
GRHL1 grainyhead-like 1 (Drosophila)
HAND1 heart and neural crest derivatives expressed 1
HAND2 heart and neural crest derivatives expressed 2
HDAC4 histone deacetylase 4
HDAC5 histone deacetylase 5
HHEX hematopoietically expressed homeobox
HINFP histone H4 transcription factor
HMGA2 high mobility group AT-hook 2
HMGB1 high mobility group box 1
HMGB2 high mobility group box 2
HNF1A HNF1 homeobox A
HNF4A hepatocyte nuclear factor 4, alpha
HNRNPL heterogeneous nuclear ribonucleoprotein L
HOXC13 homeobox C13
HSF1 heat shock transcription factor 1
IRF1 interferon regulatory factor 1
JUN jun proto-oncogene
JUND jun D proto-oncogene
KCNH2 potassium channel, voltage gated eag related subfamily H, member 2
KDM5A lysine (K)-specific demethylase 5A
KLF1 Kruppel-like factor 1 (erythroid)
KLF11 Kruppel-like factor 11
KLF15 Kruppel-like factor 15
KLF17 Kruppel-like factor 17
KLF4 Kruppel-like factor 4 (gut)
KMT2D lysine (K)-specific methyltransferase 2D
LIN54 lin-54 DREAM MuvB core complex component
MACROH2A1 macroH2A.1 histone
MACROH2A2 macroH2A.2 histone
MAFK v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog K
MEF2C myocyte enhancer factor 2C
MEN1 multiple endocrine neoplasia I
MESP1 mesoderm posterior basic helix-loop-helix transcription factor 1
MSX2 msh homeobox 2
MTERF3 mitochondrial transcription termination factor 3
MZF1 myeloid zinc finger 1
NANOG Nanog homeobox
NCOR1 nuclear receptor corepressor 1
NFE2L2 nuclear factor, erythroid 2-like 2
NFKB1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1
NFYA nuclear transcription factor Y, alpha
NFYB nuclear transcription factor Y, beta
NFYC nuclear transcription factor Y, gamma
NKX2-1 NK2 homeobox 1
NKX2-5 NK2 homeobox 5
NKX3-1 NK3 homeobox 1
NR1D1 nuclear receptor subfamily 1, group D, member 1
NR1H3 nuclear receptor subfamily 1, group H, member 3
NR5A2 nuclear receptor subfamily 5, group A, member 2
PAX2 paired box 2
PAX6 paired box 6
PAX8 paired box 8
PBX1 pre-B-cell leukemia homeobox 1
PER1 period circadian clock 1
PER2 period circadian clock 2
PER3 period circadian clock 3
PITX2 paired-like homeodomain 2
POU2F2 POU class 2 homeobox 2
POU5F1 POU class 5 homeobox 1
PPARG peroxisome proliferator-activated receptor gamma
PRDM16 PR domain containing 16
PRDM5 PR domain containing 5
PRDM9 PR domain containing 9
PROX1 prospero homeobox 1
PSG1 pregnancy specific beta-1-glycoprotein 1
RBBP5 retinoblastoma binding protein 5
RELA v-rel avian reticuloendotheliosis viral oncogene homolog A
REST RE1-silencing transcription factor
RFX3 regulatory factor X, 3 (influences HLA class II expression)
RFX6 regulatory factor X, 6
RNF10 ring finger protein 10
RUNX1 runt-related transcription factor 1
RXRA retinoid X receptor, alpha
SFPQ splicing factor proline/glutamine-rich
SIX1 SIX homeobox 1
SMAD3 SMAD family member 3
SMAD4 SMAD family member 4
SMAD6 SMAD family member 6
SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
SNCA synuclein, alpha (non A4 component of amyloid precursor)
SOX10 SRY (sex determining region Y)-box 10
SOX11 SRY (sex determining region Y)-box 11
SOX12 SRY (sex determining region Y)-box 12
SOX13 SRY (sex determining region Y)-box 13
SOX17 SRY (sex determining region Y)-box 17
SOX18 SRY (sex determining region Y)-box 18
SOX2 SRY (sex determining region Y)-box 2
SOX4 SRY (sex determining region Y)-box 4
SOX5 SRY (sex determining region Y)-box 5
SOX6 SRY (sex determining region Y)-box 6
SOX7 SRY (sex determining region Y)-box 7
SPI1 Spi-1 proto-oncogene
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor)
SUV39H1 suppressor of variegation 3-9 homolog 1 (Drosophila)
SUV39H2 suppressor of variegation 3-9 homolog 2 (Drosophila)
TAF2 TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa
TAF7 TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa
TAF9 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa
TAL1 T-cell acute lymphocytic leukemia 1
TBL1X transducin (beta)-like 1X-linked
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1
TBP TATA box binding protein
TBX18 T-box 18
TBX21 T-box 21
TCF12 transcription factor 12
TCF7 transcription factor 7 (T-cell specific, HMG-box)
TCF7L2 transcription factor 7-like 2 (T-cell specific, HMG-box)
TFAM transcription factor A, mitochondrial
TFAP2A transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)
TFAP4 transcription factor AP-4 (activating enhancer binding protein 4)
TFE3 transcription factor binding to IGHM enhancer 3
TFEB transcription factor EB
THRA thyroid hormone receptor, alpha
TNF tumor necrosis factor
TP53 tumor protein p53
TP73 tumor protein p73
VSX1 visual system homeobox 1
WT1 Wilms tumor 1
XRCC5 X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)
XRCC6 X-ray repair complementing defective repair in Chinese hamster cells 6
YAP1 Yes-associated protein 1
YY1 YY1 transcription factor
ZBED2 zinc finger, BED-type containing 2
ZBED4 zinc finger, BED-type containing 4
ZBED6 zinc finger, BED-type containing 6
ZBTB14 zinc finger and BTB domain containing 14
ZBTB20 zinc finger and BTB domain containing 20
ZBTB46 zinc finger and BTB domain containing 46
ZBTB48 zinc finger and BTB domain containing 48
ZBTB8A zinc finger and BTB domain containing 8A
ZNF174 zinc finger protein 174
ZNF217 zinc finger protein 217
ZNF263 zinc finger protein 263
ZNF281 zinc finger protein 281
ZNF335 zinc finger protein 335
ZNF513 zinc finger protein 513
ZNF568 zinc finger protein 568
ZNF579 zinc finger protein 579
ZNF639 zinc finger protein 639
ZNF658 zinc finger protein 658
ZNF746 zinc finger protein 746