transmembrane collagen trimer Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description Any collagen trimer that passes through a lipid bilayer membrane. (Gene Ontology, GO_0030936)
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Genes

28 proteins co-occuring with the transmembrane collagen trimer cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
COL17A1 collagen, type XVII, alpha 1 1.97982
COL25A1 collagen, type XXV, alpha 1 1.84976
COL13A1 collagen, type XIII, alpha 1 1.7964
LAIR1 leukocyte-associated immunoglobulin-like receptor 1 1.2793
FURIN furin (paired basic amino acid cleaving enzyme) 1.09238
ADAM9 ADAM metallopeptidase domain 9 1.02032
LAIR2 leukocyte-associated immunoglobulin-like receptor 2 0.997595
GLDN gliomedin 0.878712
ADAM10 ADAM metallopeptidase domain 10 0.719906
LAMC2 laminin, gamma 2 0.719015
PKP1 plakophilin 1 0.573411
TXNDC9 thioredoxin domain containing 9 0.524704
CDH11 cadherin 11, type 2, OB-cadherin (osteoblast) 0.521841
SFN stratifin 0.520615
BMP1 bone morphogenetic protein 1 0.498636
KRT16 keratin 16, type I 0.4958
PHF1 PHD finger protein 1 0.464798
NFASC neurofascin 0.464397
ITGB4 integrin, beta 4 0.445672
NRCAM neuronal cell adhesion molecule 0.42396
TIMP3 TIMP metallopeptidase inhibitor 3 0.362422
ADAM17 ADAM metallopeptidase domain 17 0.346071
ITGA6 integrin, alpha 6 0.30924
COL7A1 collagen, type VII, alpha 1 0.278877
S100B S100 calcium binding protein B 0.242437
EDA ectodysplasin A 0.218914
MLANA melan-A 0.215063
LGALS3 lectin, galactoside-binding, soluble, 3 0.183025
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