| Dataset | CMAP Signatures of Differentially Expressed Genes for Small Molecules |
| Category | transcriptomics |
| Type | small molecule perturbation |
| Description | small molecule perturbation identified as [small molecule name]-[perturbation ID] (ChIP-X Enrichment Analysis) |
| Similar Terms | |
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197 genes differentially expressed following the tretinoin-1211 small molecule perturbation from the CMAP Signatures of Differentially Expressed Genes for Small Molecules dataset.
| Symbol | Name |
|---|---|
| AAK1 | AP2 associated kinase 1 |
| ABCA1 | ATP-binding cassette, sub-family A (ABC1), member 1 |
| ADM | adrenomedullin |
| AHI1 | Abelson helper integration site 1 |
| ALDH3B1 | aldehyde dehydrogenase 3 family, member B1 |
| APC | adenomatous polyposis coli |
| ARHGDIA | Rho GDP dissociation inhibitor (GDI) alpha |
| BCL2L1 | BCL2-like 1 |
| C10ORF10 | chromosome 10 open reading frame 10 |
| C1QTNF3 | C1q and tumor necrosis factor related protein 3 |
| C4ORF29 | chromosome 4 open reading frame 29 |
| CACNA1I | calcium channel, voltage-dependent, T type, alpha 1I subunit |
| CCDC186 | coiled-coil domain containing 186 |
| CDC42 | cell division cycle 42 |
| CFH | complement factor H |
| CHMP6 | charged multivesicular body protein 6 |
| CHRNA9 | cholinergic receptor, nicotinic, alpha 9 (neuronal) |
| CPNE7 | copine VII |
| CRY2 | cryptochrome circadian clock 2 |
| CWF19L1 | CWF19-like 1, cell cycle control (S. pombe) |
| DHODH | dihydroorotate dehydrogenase (quinone) |
| DHRS3 | dehydrogenase/reductase (SDR family) member 3 |
| DNAJB9 | DnaJ (Hsp40) homolog, subfamily B, member 9 |
| DUSP1 | dual specificity phosphatase 1 |
| EFEMP2 | EGF containing fibulin-like extracellular matrix protein 2 |
| EGR1 | early growth response 1 |
| ELAC2 | elaC ribonuclease Z 2 |
| ESRRA | estrogen-related receptor alpha |
| EWSR1 | EWS RNA-binding protein 1 |
| FAM168A | family with sequence similarity 168, member A |
| FBXO2 | F-box protein 2 |
| GIF | gastric intrinsic factor (vitamin B synthesis) |
| GLP1R | glucagon-like peptide 1 receptor |
| GPATCH2L | G patch domain containing 2-like |
| GPRC5D | G protein-coupled receptor, class C, group 5, member D |
| HIST1H1D | histone cluster 1, H1d |
| HNRNPA3 | heterogeneous nuclear ribonucleoprotein A3 |
| IFNA17 | interferon, alpha 17 |
| IL1B | interleukin 1, beta |
| ITGB4 | integrin, beta 4 |
| KITLG | KIT ligand |
| LRRK1 | leucine-rich repeat kinase 1 |
| MECP2 | methyl CpG binding protein 2 |
| MID1 | midline 1 |
| MMP14 | matrix metallopeptidase 14 (membrane-inserted) |
| NELL2 | NEL-like 2 (chicken) |
| NF1 | neurofibromin 1 |
| NF2 | neurofibromin 2 (merlin) |
| NPAS2 | neuronal PAS domain protein 2 |
| PBXIP1 | pre-B-cell leukemia homeobox interacting protein 1 |
| PCNXL2 | pecanex-like 2 (Drosophila) |
| PDGFB | platelet-derived growth factor beta polypeptide |
| PIP5K1A | phosphatidylinositol-4-phosphate 5-kinase, type I, alpha |
| PLA2G7 | phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma) |
| PLCG1 | phospholipase C, gamma 1 |
| PMS2P3 | postmeiotic segregation increased 2 pseudogene 3 |
| PPP1R3C | protein phosphatase 1, regulatory subunit 3C |
| PRF1 | perforin 1 (pore forming protein) |
| PRR4 | proline rich 4 (lacrimal) |
| PTGS2 | prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) |
| PTPN11 | protein tyrosine phosphatase, non-receptor type 11 |
| RAB11B | RAB11B, member RAS oncogene family |
| RAC3 | ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3) |
| RBM19 | RNA binding motif protein 19 |
| RPS9 | ribosomal protein S9 |
| SCD | stearoyl-CoA desaturase (delta-9-desaturase) |
| SEMA3B | sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B |
| SEMA3F | sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F |
| SGCB | sarcoglycan, beta (43kDa dystrophin-associated glycoprotein) |
| SKP2 | S-phase kinase-associated protein 2, E3 ubiquitin protein ligase |
| SLC39A9 | solute carrier family 39, member 9 |
| SMG5 | SMG5 nonsense mediated mRNA decay factor |
| SMYD5 | SMYD family member 5 |
| SOX12 | SRY (sex determining region Y)-box 12 |
| SPOCK3 | sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 |
| SPTBN1 | spectrin, beta, non-erythrocytic 1 |
| STAG3L4 | stromal antigen 3-like 4 (pseudogene) |
| STX5 | syntaxin 5 |
| SULT1B1 | sulfotransferase family, cytosolic, 1B, member 1 |
| SYNGR1 | synaptogyrin 1 |
| THBD | thrombomodulin |
| TLE4 | transducin-like enhancer of split 4 |
| TMEM209 | transmembrane protein 209 |
| TMEM259 | transmembrane protein 259 |
| TMEM53 | transmembrane protein 53 |
| TUSC2 | tumor suppressor candidate 2 |
| TUT1 | terminal uridylyl transferase 1, U6 snRNA-specific |
| TWISTNB | TWIST neighbor |
| TXK | TXK tyrosine kinase |
| UBE3A | ubiquitin protein ligase E3A |
| URB1 | URB1 ribosome biogenesis 1 homolog (S. cerevisiae) |
| VEGFA | vascular endothelial growth factor A |
| VGLL3 | vestigial-like family member 3 |
| VPS41 | vacuolar protein sorting 41 homolog (S. cerevisiae) |
| YY2 | YY2 transcription factor |
| ZNF141 | zinc finger protein 141 |
| ZNF277 | zinc finger protein 277 |
| ZNF287 | zinc finger protein 287 |
| Symbol | Name |
|---|---|
| ABCA7 | ATP-binding cassette, sub-family A (ABC1), member 7 |
| ACBD4 | acyl-CoA binding domain containing 4 |
| ADAMTS1 | ADAM metallopeptidase with thrombospondin type 1 motif, 1 |
| AGPAT4 | 1-acylglycerol-3-phosphate O-acyltransferase 4 |
| ALG12 | ALG12, alpha-1,6-mannosyltransferase |
| ANKRD36 | ankyrin repeat domain 36 |
| APH1B | APH1B gamma secretase subunit |
| ARAP3 | ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 |
| BCAS3 | breast carcinoma amplified sequence 3 |
| BMP4 | bone morphogenetic protein 4 |
| C16ORF45 | chromosome 16 open reading frame 45 |
| C16ORF59 | chromosome 16 open reading frame 59 |
| C19ORF40 | chromosome 19 open reading frame 40 |
| C1ORF115 | chromosome 1 open reading frame 115 |
| CAPN5 | calpain 5 |
| CHRNB1 | cholinergic receptor, nicotinic, beta 1 (muscle) |
| CLUH | clustered mitochondria (cluA/CLU1) homolog |
| CYB5R2 | cytochrome b5 reductase 2 |
| DDX54 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 |
| DENND4B | DENN/MADD domain containing 4B |
| DKFZP586I1420 | uncharacterized protein DKFZp586I1420 |
| DTX2 | deltex 2, E3 ubiquitin ligase |
| DYRK3 | dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3 |
| E4F1 | E4F transcription factor 1 |
| EFNA3 | ephrin-A3 |
| EGF | epidermal growth factor |
| ERCC2 | excision repair cross-complementation group 2 |
| FAM155A | family with sequence similarity 155, member A |
| FGF1 | fibroblast growth factor 1 (acidic) |
| FHOD1 | formin homology 2 domain containing 1 |
| GPRIN2 | G protein regulated inducer of neurite outgrowth 2 |
| GTF3C5 | general transcription factor IIIC, polypeptide 5, 63kDa |
| HDAC4 | histone deacetylase 4 |
| HECTD3 | HECT domain containing E3 ubiquitin protein ligase 3 |
| IFI27 | interferon, alpha-inducible protein 27 |
| IFI35 | interferon-induced protein 35 |
| IFI6 | interferon, alpha-inducible protein 6 |
| IL17RB | interleukin 17 receptor B |
| IL32 | interleukin 32 |
| JAM3 | junctional adhesion molecule 3 |
| KRT37 | keratin 37, type I |
| LARP6 | La ribonucleoprotein domain family, member 6 |
| LRFN4 | leucine rich repeat and fibronectin type III domain containing 4 |
| LRP5L | low density lipoprotein receptor-related protein 5-like |
| LY6G5C | lymphocyte antigen 6 complex, locus G5C |
| LYPD3 | LY6/PLAUR domain containing 3 |
| MCTP1 | multiple C2 domains, transmembrane 1 |
| MGC12488 | |
| MNX1 | motor neuron and pancreas homeobox 1 |
| MYLIP | myosin regulatory light chain interacting protein |
| NBEAL2 | neurobeachin-like 2 |
| NDE1 | nudE neurodevelopment protein 1 |
| NDP | Norrie disease (pseudoglioma) |
| NFIX | nuclear factor I/X (CCAAT-binding transcription factor) |
| NPDC1 | neural proliferation, differentiation and control, 1 |
| NYNRIN | NYN domain and retroviral integrase containing |
| OLFML2A | olfactomedin-like 2A |
| PAK3 | p21 protein (Cdc42/Rac)-activated kinase 3 |
| PC | pyruvate carboxylase |
| PCBP4 | poly(rC) binding protein 4 |
| PCOLCE | procollagen C-endopeptidase enhancer |
| PCYT2 | phosphate cytidylyltransferase 2, ethanolamine |
| PLEKHG6 | pleckstrin homology domain containing, family G (with RhoGef domain) member 6 |
| POLR3D | polymerase (RNA) III (DNA directed) polypeptide D, 44kDa |
| POMT2 | protein-O-mannosyltransferase 2 |
| PPBP | pro-platelet basic protein (chemokine (C-X-C motif) ligand 7) |
| PRR14L | proline rich 14-like |
| PYCRL | pyrroline-5-carboxylate reductase-like |
| RBM38 | RNA binding motif protein 38 |
| RNF122 | ring finger protein 122 |
| SCUBE3 | signal peptide, CUB domain, EGF-like 3 |
| SDC3 | syndecan 3 |
| SEC61A2 | Sec61 alpha 2 subunit (S. cerevisiae) |
| SEZ6L2 | seizure related 6 homolog (mouse)-like 2 |
| SH3GL2 | SH3-domain GRB2-like 2 |
| SLC12A9 | solute carrier family 12, member 9 |
| SLC22A18 | solute carrier family 22, member 18 |
| SLC9A3R1 | solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 1 |
| SNPH | syntaphilin |
| SPATA2L | spermatogenesis associated 2-like |
| TCF7L1 | transcription factor 7-like 1 (T-cell specific, HMG-box) |
| TIMP4 | TIMP metallopeptidase inhibitor 4 |
| TM7SF2 | transmembrane 7 superfamily member 2 |
| TMEM40 | transmembrane protein 40 |
| TRNAU1AP | tRNA selenocysteine 1 associated protein 1 |
| TRPC4AP | transient receptor potential cation channel, subfamily C, member 4 associated protein |
| TTLL7 | tubulin tyrosine ligase-like family member 7 |
| UNKL | unkempt family zinc finger-like |
| USP20 | ubiquitin specific peptidase 20 |
| USP27X | ubiquitin specific peptidase 27, X-linked |
| USP6 | ubiquitin specific peptidase 6 |
| VASP | vasodilator-stimulated phosphoprotein |
| WDR91 | WD repeat domain 91 |
| WFS1 | Wolfram syndrome 1 (wolframin) |
| XAB2 | XPA binding protein 2 |
| XPNPEP3 | X-prolyl aminopeptidase 3, mitochondrial |
| ZBED1 | zinc finger, BED-type containing 1 |
| ZNF473 | zinc finger protein 473 |
| ZNF696 | zinc finger protein 696 |
