| Dataset | CMAP Signatures of Differentially Expressed Genes for Small Molecules |
| Category | transcriptomics |
| Type | small molecule perturbation |
| Description | small molecule perturbation identified as [small molecule name]-[perturbation ID] (ChIP-X Enrichment Analysis) |
| Similar Terms | |
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198 genes differentially expressed following the trichostatin A-1659 small molecule perturbation from the CMAP Signatures of Differentially Expressed Genes for Small Molecules dataset.
| Symbol | Name |
|---|---|
| ACSBG1 | acyl-CoA synthetase bubblegum family member 1 |
| ADD3 | adducin 3 (gamma) |
| AGFG2 | ArfGAP with FG repeats 2 |
| AHNAK2 | AHNAK nucleoprotein 2 |
| ALDOC | aldolase C, fructose-bisphosphate |
| ARID3B | AT rich interactive domain 3B (BRIGHT-like) |
| ARMCX2 | armadillo repeat containing, X-linked 2 |
| BACE1 | beta-site APP-cleaving enzyme 1 |
| BAIAP3 | BAI1-associated protein 3 |
| BCL6 | B-cell CLL/lymphoma 6 |
| CCDC28A | coiled-coil domain containing 28A |
| CDKN1C | cyclin-dependent kinase inhibitor 1C (p57, Kip2) |
| CDKN2D | cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) |
| CEP104 | centrosomal protein 104kDa |
| CLGN | calmegin |
| CORO1A | coronin, actin binding protein, 1A |
| CRISPLD2 | cysteine-rich secretory protein LCCL domain containing 2 |
| CSRP2 | cysteine and glycine-rich protein 2 |
| CXADR | coxsackie virus and adenovirus receptor |
| CYB5R1 | cytochrome b5 reductase 1 |
| CYLD | cylindromatosis (turban tumor syndrome) |
| CYP46A1 | cytochrome P450, family 46, subfamily A, polypeptide 1 |
| DHRS2 | dehydrogenase/reductase (SDR family) member 2 |
| DLX2 | distal-less homeobox 2 |
| DNAJB4 | DnaJ (Hsp40) homolog, subfamily B, member 4 |
| DNAJC12 | DnaJ (Hsp40) homolog, subfamily C, member 12 |
| DNAJC6 | DnaJ (Hsp40) homolog, subfamily C, member 6 |
| DPYSL4 | dihydropyrimidinase-like 4 |
| DYRK3 | dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3 |
| EFNB3 | ephrin-B3 |
| ELOVL4 | ELOVL fatty acid elongase 4 |
| EPOR | erythropoietin receptor |
| FAM46C | family with sequence similarity 46, member C |
| FKBP1B | FK506 binding protein 1B, 12.6 kDa |
| FYN | FYN proto-oncogene, Src family tyrosine kinase |
| GCHFR | GTP cyclohydrolase I feedback regulator |
| GEM | GTP binding protein overexpressed in skeletal muscle |
| GFPT2 | glutamine-fructose-6-phosphate transaminase 2 |
| GLDC | glycine dehydrogenase (decarboxylating) |
| GLRX | glutaredoxin (thioltransferase) |
| GLS | glutaminase |
| GTF2B | general transcription factor IIB |
| HEY1 | hes-related family bHLH transcription factor with YRPW motif 1 |
| HSD17B11 | hydroxysteroid (17-beta) dehydrogenase 11 |
| HSPA2 | heat shock 70kDa protein 2 |
| IGFBP3 | insulin-like growth factor binding protein 3 |
| ITPR1 | inositol 1,4,5-trisphosphate receptor, type 1 |
| JAKMIP2 | janus kinase and microtubule interacting protein 2 |
| KIAA0513 | KIAA0513 |
| KIFAP3 | kinesin-associated protein 3 |
| LIMA1 | LIM domain and actin binding 1 |
| LYST | lysosomal trafficking regulator |
| MAPRE2 | microtubule-associated protein, RP/EB family, member 2 |
| MLF1 | myeloid leukemia factor 1 |
| MMD | monocyte to macrophage differentiation-associated |
| NEU1 | sialidase 1 (lysosomal sialidase) |
| NPC1 | Niemann-Pick disease, type C1 |
| NXN | nucleoredoxin |
| OASL | 2'-5'-oligoadenylate synthetase-like |
| OLFML2A | olfactomedin-like 2A |
| PADI3 | peptidyl arginine deiminase, type III |
| PCDH9 | protocadherin 9 |
| PIK3CD | phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta |
| PLCG2 | phospholipase C, gamma 2 (phosphatidylinositol-specific) |
| PMEL | premelanosome protein |
| PPM1E | protein phosphatase, Mg2+/Mn2+ dependent, 1E |
| PPP2R3A | protein phosphatase 2, regulatory subunit B'', alpha |
| PRPH | peripherin |
| REEP1 | receptor accessory protein 1 |
| RGL1 | ral guanine nucleotide dissociation stimulator-like 1 |
| RGS2 | regulator of G-protein signaling 2 |
| RPL3L | ribosomal protein L3-like |
| RTN2 | reticulon 2 |
| RUNDC3B | RUN domain containing 3B |
| SAT1 | spermidine/spermine N1-acetyltransferase 1 |
| SEPP1 | selenoprotein P, plasma, 1 |
| SERPINB9 | serpin peptidase inhibitor, clade B (ovalbumin), member 9 |
| SERPINI1 | serpin peptidase inhibitor, clade I (neuroserpin), member 1 |
| SH3GL3 | SH3-domain GRB2-like 3 |
| SIRT4 | sirtuin 4 |
| SLC17A7 | solute carrier family 17 (vesicular glutamate transporter), member 7 |
| ST3GAL5 | ST3 beta-galactoside alpha-2,3-sialyltransferase 5 |
| STK17A | serine/threonine kinase 17a |
| SYT11 | synaptotagmin XI |
| TBXA2R | thromboxane A2 receptor |
| TMSB15A | thymosin beta 15a |
| TNFAIP8 | tumor necrosis factor, alpha-induced protein 8 |
| TUBA4A | tubulin, alpha 4a |
| TUFT1 | tuftelin 1 |
| TXNIP | thioredoxin interacting protein |
| ULBP2 | UL16 binding protein 2 |
| WDR19 | WD repeat domain 19 |
| WDR47 | WD repeat domain 47 |
| WIPI1 | WD repeat domain, phosphoinositide interacting 1 |
| ZCCHC24 | zinc finger, CCHC domain containing 24 |
| ZDHHC11 | zinc finger, DHHC-type containing 11 |
| ZNF10 | zinc finger protein 10 |
| ZNF204P | zinc finger protein 204, pseudogene |
| Symbol | Name |
|---|---|
| ACKR3 | atypical chemokine receptor 3 |
| ADNP | activity-dependent neuroprotector homeobox |
| ADRA2C | adrenoceptor alpha 2C |
| AKAP8 | A kinase (PRKA) anchor protein 8 |
| AMIGO2 | adhesion molecule with Ig-like domain 2 |
| AP5S1 | adaptor-related protein complex 5, sigma 1 subunit |
| ATAD2B | ATPase family, AAA domain containing 2B |
| BANP | BTG3 associated nuclear protein |
| BCAR3 | breast cancer anti-estrogen resistance 3 |
| BCL2L2 | BCL2-like 2 |
| BRINP3 | bone morphogenetic protein/retinoic acid inducible neural-specific 3 |
| C9ORF91 | chromosome 9 open reading frame 91 |
| CBFA2T3 | core-binding factor, runt domain, alpha subunit 2; translocated to, 3 |
| CBR3 | carbonyl reductase 3 |
| CCND1 | cyclin D1 |
| CDKN1B | cyclin-dependent kinase inhibitor 1B (p27, Kip1) |
| CDT1 | chromatin licensing and DNA replication factor 1 |
| CHST15 | carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15 |
| COIL | coilin |
| CTCF | CCCTC-binding factor (zinc finger protein) |
| CTDSP1 | CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 |
| DKK1 | dickkopf WNT signaling pathway inhibitor 1 |
| EFNA1 | ephrin-A1 |
| EGR3 | early growth response 3 |
| ELF4 | E74-like factor 4 (ets domain transcription factor) |
| EXOSC10 | exosome component 10 |
| FAM57A | family with sequence similarity 57, member A |
| FJX1 | four jointed box 1 (Drosophila) |
| FOXA1 | forkhead box A1 |
| FOXC1 | forkhead box C1 |
| FOXD1 | forkhead box D1 |
| GABPB1 | GA binding protein transcription factor, beta subunit 1 |
| GATA3 | GATA binding protein 3 |
| GMEB2 | glucocorticoid modulatory element binding protein 2 |
| GPRC5C | G protein-coupled receptor, class C, group 5, member C |
| GRWD1 | glutamate-rich WD repeat containing 1 |
| GTF2I | general transcription factor IIi |
| GTF2IRD1 | GTF2I repeat domain containing 1 |
| H2AFY2 | H2A histone family, member Y2 |
| INHBB | inhibin, beta B |
| IRS1 | insulin receptor substrate 1 |
| IRX4 | iroquois homeobox 4 |
| IRX5 | iroquois homeobox 5 |
| JADE3 | jade family PHD finger 3 |
| KEAP1 | kelch-like ECH-associated protein 1 |
| LMNB1 | lamin B1 |
| LRP8 | low density lipoprotein receptor-related protein 8, apolipoprotein e receptor |
| MCM9 | minichromosome maintenance complex component 9 |
| MEPCE | methylphosphate capping enzyme |
| MICALL1 | MICAL-like 1 |
| MSL1 | male-specific lethal 1 homolog (Drosophila) |
| MYC | v-myc avian myelocytomatosis viral oncogene homolog |
| NACC2 | NACC family member 2, BEN and BTB (POZ) domain containing |
| NCOA6 | nuclear receptor coactivator 6 |
| NPY1R | neuropeptide Y receptor Y1 |
| NRIP1 | nuclear receptor interacting protein 1 |
| NUAK1 | NUAK family, SNF1-like kinase, 1 |
| PAGR1 | PAXIP1 associated glutamate-rich protein 1 |
| PHLDA3 | pleckstrin homology-like domain, family A, member 3 |
| PLEKHO1 | pleckstrin homology domain containing, family O member 1 |
| POGK | pogo transposable element with KRAB domain |
| PRR15L | proline rich 15-like |
| PTPN9 | protein tyrosine phosphatase, non-receptor type 9 |
| RASGRP1 | RAS guanyl releasing protein 1 (calcium and DAG-regulated) |
| SCRN1 | secernin 1 |
| SEMA4C | sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C |
| SETD1B | SET domain containing 1B |
| SLC29A2 | solute carrier family 29 (equilibrative nucleoside transporter), member 2 |
| SLC6A14 | solute carrier family 6 (amino acid transporter), member 14 |
| SMAD7 | SMAD family member 7 |
| SNHG20 | small nucleolar RNA host gene 20 |
| SREK1 | splicing regulatory glutamine/lysine-rich protein 1 |
| SRSF4 | serine/arginine-rich splicing factor 4 |
| ST3GAL1 | ST3 beta-galactoside alpha-2,3-sialyltransferase 1 |
| STC2 | stanniocalcin 2 |
| SUV420H1 | suppressor of variegation 4-20 homolog 1 (Drosophila) |
| TGIF1 | TGFB-induced factor homeobox 1 |
| TNFRSF1A | tumor necrosis factor receptor superfamily, member 1A |
| TNS3 | tensin 3 |
| TRIB1 | tribbles pseudokinase 1 |
| TRIB3 | tribbles pseudokinase 3 |
| TRIM16 | tripartite motif containing 16 |
| TRIM8 | tripartite motif containing 8 |
| TRPS1 | trichorhinophalangeal syndrome I |
| TSKU | tsukushi, small leucine rich proteoglycan |
| TSSC4 | tumor suppressing subtransferable candidate 4 |
| UBL4A | ubiquitin-like 4A |
| UBTF | upstream binding transcription factor, RNA polymerase I |
| UBXN8 | UBX domain protein 8 |
| USP21 | ubiquitin specific peptidase 21 |
| VPS54 | vacuolar protein sorting 54 homolog (S. cerevisiae) |
| XBP1 | X-box binding protein 1 |
| YAP1 | Yes-associated protein 1 |
| ZBED1 | zinc finger, BED-type containing 1 |
| ZC3H4 | zinc finger CCCH-type containing 4 |
| ZHX2 | zinc fingers and homeoboxes 2 |
| ZIC1 | Zic family member 1 |
| ZMIZ1 | zinc finger, MIZ-type containing 1 |
| ZNF32 | zinc finger protein 32 |
| ZNF692 | zinc finger protein 692 |
