| Dataset | CMAP Signatures of Differentially Expressed Genes for Small Molecules |
| Category | transcriptomics |
| Type | small molecule perturbation |
| Description | small molecule perturbation identified as [small molecule name]-[perturbation ID] (ChIP-X Enrichment Analysis) |
| Similar Terms | |
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200 genes differentially expressed following the trichostatin A-3688 small molecule perturbation from the CMAP Signatures of Differentially Expressed Genes for Small Molecules dataset.
| Symbol | Name |
|---|---|
| ABAT | 4-aminobutyrate aminotransferase |
| ABCG1 | ATP-binding cassette, sub-family G (WHITE), member 1 |
| ANGPTL4 | angiopoietin-like 4 |
| APP | amyloid beta (A4) precursor protein |
| AQP3 | aquaporin 3 (Gill blood group) |
| ARG2 | arginase 2 |
| ASMTL | acetylserotonin O-methyltransferase-like |
| ATP7A | ATPase, Cu++ transporting, alpha polypeptide |
| BAIAP2 | BAI1-associated protein 2 |
| BAMBI | BMP and activin membrane-bound inhibitor |
| BCL6 | B-cell CLL/lymphoma 6 |
| BMP4 | bone morphogenetic protein 4 |
| CDC42EP3 | CDC42 effector protein (Rho GTPase binding) 3 |
| CDKN1A | cyclin-dependent kinase inhibitor 1A (p21, Cip1) |
| CFAP69 | cilia and flagella associated protein 69 |
| CNTNAP2 | contactin associated protein-like 2 |
| CORO1A | coronin, actin binding protein, 1A |
| CPM | carboxypeptidase M |
| CRISPLD2 | cysteine-rich secretory protein LCCL domain containing 2 |
| CTGF | connective tissue growth factor |
| CTSZ | cathepsin Z |
| CXCR4 | chemokine (C-X-C motif) receptor 4 |
| CYP39A1 | cytochrome P450, family 39, subfamily A, polypeptide 1 |
| CYR61 | cysteine-rich, angiogenic inducer, 61 |
| DENND3 | DENN/MADD domain containing 3 |
| DNAJC12 | DnaJ (Hsp40) homolog, subfamily C, member 12 |
| DUSP1 | dual specificity phosphatase 1 |
| DUSP10 | dual specificity phosphatase 10 |
| EFEMP2 | EGF containing fibulin-like extracellular matrix protein 2 |
| ELOVL4 | ELOVL fatty acid elongase 4 |
| EPHB3 | EPH receptor B3 |
| EPPK1 | epiplakin 1 |
| EXT1 | exostosin glycosyltransferase 1 |
| FABP4 | fatty acid binding protein 4, adipocyte |
| FKBP10 | FK506 binding protein 10, 65 kDa |
| FOSL2 | FOS-like antigen 2 |
| FYN | FYN proto-oncogene, Src family tyrosine kinase |
| GLRX | glutaredoxin (thioltransferase) |
| GMPR | guanosine monophosphate reductase |
| GUCY1B3 | guanylate cyclase 1, soluble, beta 3 |
| H1F0 | H1 histone family, member 0 |
| H1FX | H1 histone family, member X |
| HOXA1 | homeobox A1 |
| IRF6 | interferon regulatory factor 6 |
| KCNH2 | potassium channel, voltage gated eag related subfamily H, member 2 |
| KCNJ2 | potassium channel, inwardly rectifying subfamily J, member 2 |
| KIAA0040 | KIAA0040 |
| KIF5C | kinesin family member 5C |
| LBH | limb bud and heart development |
| LINC00312 | long intergenic non-protein coding RNA 312 |
| LINC00341 | long intergenic non-protein coding RNA 341 |
| LMCD1 | LIM and cysteine-rich domains 1 |
| MAN1C1 | mannosidase, alpha, class 1C, member 1 |
| MAP1A | microtubule-associated protein 1A |
| MEGF9 | multiple EGF-like-domains 9 |
| MLF1 | myeloid leukemia factor 1 |
| MMP1 | matrix metallopeptidase 1 |
| MMP16 | matrix metallopeptidase 16 (membrane-inserted) |
| MUC3B | mucin 3B, cell surface associated |
| NEAT1 | nuclear paraspeckle assembly transcript 1 (non-protein coding) |
| NEDD9 | neural precursor cell expressed, developmentally down-regulated 9 |
| NFKBIB | nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta |
| NGF | nerve growth factor (beta polypeptide) |
| NPM3 | nucleophosmin/nucleoplasmin 3 |
| NR4A2 | nuclear receptor subfamily 4, group A, member 2 |
| OASL | 2'-5'-oligoadenylate synthetase-like |
| PDE4DIP | phosphodiesterase 4D interacting protein |
| PICALM | phosphatidylinositol binding clathrin assembly protein |
| PRKAR2B | protein kinase, cAMP-dependent, regulatory, type II, beta |
| PRKCD | protein kinase C, delta |
| PSMB9 | proteasome (prosome, macropain) subunit, beta type, 9 |
| RAB11FIP1 | RAB11 family interacting protein 1 (class I) |
| RAI2 | retinoic acid induced 2 |
| RGL1 | ral guanine nucleotide dissociation stimulator-like 1 |
| RGS17 | regulator of G-protein signaling 17 |
| RGS4 | regulator of G-protein signaling 4 |
| RIMS3 | regulating synaptic membrane exocytosis 3 |
| RNF24 | ring finger protein 24 |
| SAT1 | spermidine/spermine N1-acetyltransferase 1 |
| SERPINI1 | serpin peptidase inhibitor, clade I (neuroserpin), member 1 |
| SIRT4 | sirtuin 4 |
| SLC25A44 | solute carrier family 25, member 44 |
| SLC30A1 | solute carrier family 30 (zinc transporter), member 1 |
| SNAI1 | snail family zinc finger 1 |
| SNCB | synuclein, beta |
| ST3GAL5 | ST3 beta-galactoside alpha-2,3-sialyltransferase 5 |
| STAT4 | signal transducer and activator of transcription 4 |
| STC1 | stanniocalcin 1 |
| STK16 | serine/threonine kinase 16 |
| STON1 | stonin 1 |
| SYT1 | synaptotagmin I |
| TAF15 | TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa |
| TAGLN3 | transgelin 3 |
| THEMIS2 | thymocyte selection associated family member 2 |
| TJP3 | tight junction protein 3 |
| TNIK | TRAF2 and NCK interacting kinase |
| TNS1 | tensin 1 |
| TUBB2B | tubulin, beta 2B class IIb |
| TUFT1 | tuftelin 1 |
| USP2 | ubiquitin specific peptidase 2 |
| Symbol | Name |
|---|---|
| ADGRG6 | adhesion G protein-coupled receptor G6 |
| ADNP | activity-dependent neuroprotector homeobox |
| AP5S1 | adaptor-related protein complex 5, sigma 1 subunit |
| ARMC6 | armadillo repeat containing 6 |
| ARSJ | arylsulfatase family, member J |
| ASPSCR1 | alveolar soft part sarcoma chromosome region, candidate 1 |
| BANP | BTG3 associated nuclear protein |
| BCAR3 | breast cancer anti-estrogen resistance 3 |
| C19ORF40 | chromosome 19 open reading frame 40 |
| CASD1 | CAS1 domain containing 1 |
| CBR3 | carbonyl reductase 3 |
| CDT1 | chromatin licensing and DNA replication factor 1 |
| CHKB | choline kinase beta |
| CLCF1 | cardiotrophin-like cytokine factor 1 |
| COA7 | cytochrome c oxidase assembly factor 7 (putative) |
| CTCF | CCCTC-binding factor (zinc finger protein) |
| CYTH2 | cytohesin 2 |
| DBF4B | DBF4 zinc finger B |
| DCLRE1A | DNA cross-link repair 1A |
| DEPDC1 | DEP domain containing 1 |
| E2F8 | E2F transcription factor 8 |
| ERCC2 | excision repair cross-complementation group 2 |
| ERN2 | endoplasmic reticulum to nucleus signaling 2 |
| FADD | Fas (TNFRSF6)-associated via death domain |
| FAM57A | family with sequence similarity 57, member A |
| FOXA1 | forkhead box A1 |
| FST | follistatin |
| FZD8 | frizzled class receptor 8 |
| GBX2 | gastrulation brain homeobox 2 |
| GINS4 | GINS complex subunit 4 (Sld5 homolog) |
| GPR1 | G protein-coupled receptor 1 |
| GRWD1 | glutamate-rich WD repeat containing 1 |
| GTF2H3 | general transcription factor IIH, polypeptide 3, 34kDa |
| GUSBP3 | glucuronidase, beta pseudogene 3 |
| HAS2 | hyaluronan synthase 2 |
| HDAC7 | histone deacetylase 7 |
| HMGA2 | high mobility group AT-hook 2 |
| IFIT2 | interferon-induced protein with tetratricopeptide repeats 2 |
| IMPACT | impact RWD domain protein |
| INHBB | inhibin, beta B |
| IPP | intracisternal A particle-promoted polypeptide |
| KEAP1 | kelch-like ECH-associated protein 1 |
| KIF15 | kinesin family member 15 |
| LIF | leukemia inhibitory factor |
| LMNB1 | lamin B1 |
| LOC100127972 | uncharacterized LOC100127972 |
| LPAR1 | lysophosphatidic acid receptor 1 |
| LRRC37A3 | leucine rich repeat containing 37, member A3 |
| LUC7L2 | LUC7-like 2 (S. cerevisiae) |
| MAGEF1 | melanoma antigen family F1 |
| MEPCE | methylphosphate capping enzyme |
| MMACHC | methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria |
| MSL1 | male-specific lethal 1 homolog (Drosophila) |
| MTPAP | mitochondrial poly(A) polymerase |
| NLRX1 | NLR family member X1 |
| NSD1 | nuclear receptor binding SET domain protein 1 |
| NUP62 | nucleoporin 62kDa |
| OPA3 | optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia) |
| OTUB2 | OTU deubiquitinase, ubiquitin aldehyde binding 2 |
| PLEKHA2 | pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 |
| PLEKHA6 | pleckstrin homology domain containing, family A member 6 |
| PLEKHO1 | pleckstrin homology domain containing, family O member 1 |
| PRRG4 | proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane) |
| PTK6 | protein tyrosine kinase 6 |
| PTPN9 | protein tyrosine phosphatase, non-receptor type 9 |
| RCBTB2 | regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 |
| RIN2 | Ras and Rab interactor 2 |
| RIPPLY3 | ripply transcriptional repressor 3 |
| SETD1B | SET domain containing 1B |
| SFMBT1 | Scm-like with four mbt domains 1 |
| SIM2 | single-minded family bHLH transcription factor 2 |
| SMG9 | SMG9 nonsense mediated mRNA decay factor |
| SNHG20 | small nucleolar RNA host gene 20 |
| SNORA21 | small nucleolar RNA, H/ACA box 21 |
| SRSF4 | serine/arginine-rich splicing factor 4 |
| STXBP3 | syntaxin binding protein 3 |
| SUV39H1 | suppressor of variegation 3-9 homolog 1 (Drosophila) |
| SUZ12P1 | suppressor of zeste 12 homolog pseudogene 1 |
| TGFB1I1 | transforming growth factor beta 1 induced transcript 1 |
| TIMM50 | translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae) |
| TMC5 | transmembrane channel-like 5 |
| TRIM13 | tripartite motif containing 13 |
| TRIM16 | tripartite motif containing 16 |
| TRMT2B | tRNA methyltransferase 2 homolog B (S. cerevisiae) |
| TTC31 | tetratricopeptide repeat domain 31 |
| VEGFC | vascular endothelial growth factor C |
| VWA9 | von Willebrand factor A domain containing 9 |
| WBSCR16 | Williams-Beuren syndrome chromosome region 16 |
| XRCC2 | X-ray repair complementing defective repair in Chinese hamster cells 2 |
| ZBED1 | zinc finger, BED-type containing 1 |
| ZBTB1 | zinc finger and BTB domain containing 1 |
| ZBTB3 | zinc finger and BTB domain containing 3 |
| ZC3H4 | zinc finger CCCH-type containing 4 |
| ZNF165 | zinc finger protein 165 |
| ZNF264 | zinc finger protein 264 |
| ZNF652 | zinc finger protein 652 |
| ZNF692 | zinc finger protein 692 |
| ZNF721 | zinc finger protein 721 |
| ZNF804A | zinc finger protein 804A |
| ZZZ3 | zinc finger, ZZ-type containing 3 |
