| Dataset | CMAP Signatures of Differentially Expressed Genes for Small Molecules |
| Category | transcriptomics |
| Type | small molecule perturbation |
| Description | small molecule perturbation identified as [small molecule name]-[perturbation ID] (ChIP-X Enrichment Analysis) |
| Similar Terms | |
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200 genes differentially expressed following the trichostatin A-3787 small molecule perturbation from the CMAP Signatures of Differentially Expressed Genes for Small Molecules dataset.
| Symbol | Name |
|---|---|
| ABAT | 4-aminobutyrate aminotransferase |
| ABCG1 | ATP-binding cassette, sub-family G (WHITE), member 1 |
| ANGPTL4 | angiopoietin-like 4 |
| AQP3 | aquaporin 3 (Gill blood group) |
| ARG2 | arginase 2 |
| BAIAP2 | BAI1-associated protein 2 |
| BAMBI | BMP and activin membrane-bound inhibitor |
| BCL6 | B-cell CLL/lymphoma 6 |
| BMP6 | bone morphogenetic protein 6 |
| CA5B | carbonic anhydrase VB, mitochondrial |
| CDC42EP3 | CDC42 effector protein (Rho GTPase binding) 3 |
| CDKN1A | cyclin-dependent kinase inhibitor 1A (p21, Cip1) |
| CDKN1C | cyclin-dependent kinase inhibitor 1C (p57, Kip2) |
| CEMIP | cell migration inducing protein, hyaluronan binding |
| CITED1 | Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1 |
| CLDN1 | claudin 1 |
| COBL | cordon-bleu WH2 repeat protein |
| COL21A1 | collagen, type XXI, alpha 1 |
| CORO1A | coronin, actin binding protein, 1A |
| CPM | carboxypeptidase M |
| CREB5 | cAMP responsive element binding protein 5 |
| CRISPLD2 | cysteine-rich secretory protein LCCL domain containing 2 |
| CTGF | connective tissue growth factor |
| CXCR4 | chemokine (C-X-C motif) receptor 4 |
| DENND3 | DENN/MADD domain containing 3 |
| DNAJC12 | DnaJ (Hsp40) homolog, subfamily C, member 12 |
| DUSP1 | dual specificity phosphatase 1 |
| DYRK3 | dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3 |
| EFNA3 | ephrin-A3 |
| ELF3 | E74-like factor 3 (ets domain transcription factor, epithelial-specific ) |
| ELOVL4 | ELOVL fatty acid elongase 4 |
| ENPP2 | ectonucleotide pyrophosphatase/phosphodiesterase 2 |
| EPHA3 | EPH receptor A3 |
| EPHB3 | EPH receptor B3 |
| EPPK1 | epiplakin 1 |
| FABP4 | fatty acid binding protein 4, adipocyte |
| FYN | FYN proto-oncogene, Src family tyrosine kinase |
| GBP2 | guanylate binding protein 2, interferon-inducible |
| GFPT2 | glutamine-fructose-6-phosphate transaminase 2 |
| GLRX | glutaredoxin (thioltransferase) |
| GMPR | guanosine monophosphate reductase |
| HOXA1 | homeobox A1 |
| IL1RAP | interleukin 1 receptor accessory protein |
| IRF6 | interferon regulatory factor 6 |
| KCNH2 | potassium channel, voltage gated eag related subfamily H, member 2 |
| KCNJ2 | potassium channel, inwardly rectifying subfamily J, member 2 |
| KLHL25 | kelch-like family member 25 |
| LINC00341 | long intergenic non-protein coding RNA 341 |
| LMCD1 | LIM and cysteine-rich domains 1 |
| LPPR4 | lipid phosphate phosphatase-related protein type 4 |
| MAK | male germ cell-associated kinase |
| MAN1C1 | mannosidase, alpha, class 1C, member 1 |
| MAP1A | microtubule-associated protein 1A |
| MAP2K3 | mitogen-activated protein kinase kinase 3 |
| MERTK | MER proto-oncogene, tyrosine kinase |
| MMP1 | matrix metallopeptidase 1 |
| MMP13 | matrix metallopeptidase 13 |
| MMP16 | matrix metallopeptidase 16 (membrane-inserted) |
| NEAT1 | nuclear paraspeckle assembly transcript 1 (non-protein coding) |
| NEDD9 | neural precursor cell expressed, developmentally down-regulated 9 |
| OASL | 2'-5'-oligoadenylate synthetase-like |
| PCDH9 | protocadherin 9 |
| PDE4DIP | phosphodiesterase 4D interacting protein |
| PDGFRA | platelet-derived growth factor receptor, alpha polypeptide |
| PGBD5 | piggyBac transposable element derived 5 |
| PGF | placental growth factor |
| PRKAR2B | protein kinase, cAMP-dependent, regulatory, type II, beta |
| RAB11FIP1 | RAB11 family interacting protein 1 (class I) |
| RAI2 | retinoic acid induced 2 |
| RGL1 | ral guanine nucleotide dissociation stimulator-like 1 |
| RGS17 | regulator of G-protein signaling 17 |
| RGS4 | regulator of G-protein signaling 4 |
| RND1 | Rho family GTPase 1 |
| SEMA5A | sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A |
| SERPINI1 | serpin peptidase inhibitor, clade I (neuroserpin), member 1 |
| SIRT4 | sirtuin 4 |
| SLC30A3 | solute carrier family 30 (zinc transporter), member 3 |
| SNCB | synuclein, beta |
| SORBS1 | sorbin and SH3 domain containing 1 |
| SRGAP3 | SLIT-ROBO Rho GTPase activating protein 3 |
| ST3GAL5 | ST3 beta-galactoside alpha-2,3-sialyltransferase 5 |
| STARD5 | StAR-related lipid transfer (START) domain containing 5 |
| STC1 | stanniocalcin 1 |
| STON1 | stonin 1 |
| SYNGR3 | synaptogyrin 3 |
| SYT1 | synaptotagmin I |
| SYT11 | synaptotagmin XI |
| TAGLN3 | transgelin 3 |
| TAOK3 | TAO kinase 3 |
| TBC1D2 | TBC1 domain family, member 2 |
| THEMIS2 | thymocyte selection associated family member 2 |
| TNFSF9 | tumor necrosis factor (ligand) superfamily, member 9 |
| TNIK | TRAF2 and NCK interacting kinase |
| TPMT | thiopurine S-methyltransferase |
| TRAFD1 | TRAF-type zinc finger domain containing 1 |
| TRIM36 | tripartite motif containing 36 |
| TRIM9 | tripartite motif containing 9 |
| TUBB2B | tubulin, beta 2B class IIb |
| TUFT1 | tuftelin 1 |
| UAP1L1 | UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 |
| Symbol | Name |
|---|---|
| ADNP | activity-dependent neuroprotector homeobox |
| AKAP8 | A kinase (PRKA) anchor protein 8 |
| AP5S1 | adaptor-related protein complex 5, sigma 1 subunit |
| ARHGEF16 | Rho guanine nucleotide exchange factor (GEF) 16 |
| ARMCX2 | armadillo repeat containing, X-linked 2 |
| AURKA | aurora kinase A |
| BCAR3 | breast cancer anti-estrogen resistance 3 |
| CAND2 | cullin-associated and neddylation-dissociated 2 (putative) |
| CASD1 | CAS1 domain containing 1 |
| CBR3 | carbonyl reductase 3 |
| CCDC9 | coiled-coil domain containing 9 |
| CCNJ | cyclin J |
| CCP110 | centriolar coiled coil protein 110kDa |
| CDC7 | cell division cycle 7 |
| CLCF1 | cardiotrophin-like cytokine factor 1 |
| CSNK1D | casein kinase 1, delta |
| CTCF | CCCTC-binding factor (zinc finger protein) |
| CTDSP1 | CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 |
| DECR2 | 2,4-dienoyl CoA reductase 2, peroxisomal |
| DEPDC1 | DEP domain containing 1 |
| E2F8 | E2F transcription factor 8 |
| ERMAP | erythroblast membrane-associated protein (Scianna blood group) |
| FAM57A | family with sequence similarity 57, member A |
| FJX1 | four jointed box 1 (Drosophila) |
| FOSL1 | FOS-like antigen 1 |
| FOXA1 | forkhead box A1 |
| FPGS | folylpolyglutamate synthase |
| GABPB1 | GA binding protein transcription factor, beta subunit 1 |
| GBX2 | gastrulation brain homeobox 2 |
| GMEB1 | glucocorticoid modulatory element binding protein 1 |
| HAS2 | hyaluronan synthase 2 |
| HMGA2 | high mobility group AT-hook 2 |
| HMGXB4 | HMG box domain containing 4 |
| IFIT2 | interferon-induced protein with tetratricopeptide repeats 2 |
| IFIT3 | interferon-induced protein with tetratricopeptide repeats 3 |
| IL6 | interleukin 6 |
| IMPACT | impact RWD domain protein |
| INHBB | inhibin, beta B |
| KAT6B | K(lysine) acetyltransferase 6B |
| KEAP1 | kelch-like ECH-associated protein 1 |
| KIF15 | kinesin family member 15 |
| LIF | leukemia inhibitory factor |
| LMNB1 | lamin B1 |
| LPAR1 | lysophosphatidic acid receptor 1 |
| LPAR2 | lysophosphatidic acid receptor 2 |
| LSM14B | LSM14B, SCD6 homolog B (S. cerevisiae) |
| LY6G5C | lymphocyte antigen 6 complex, locus G5C |
| MCM9 | minichromosome maintenance complex component 9 |
| MEPCE | methylphosphate capping enzyme |
| MLPH | melanophilin |
| NACC2 | NACC family member 2, BEN and BTB (POZ) domain containing |
| NCS1 | neuronal calcium sensor 1 |
| NFKBIL1 | nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1 |
| NLRX1 | NLR family member X1 |
| NME6 | NME/NM23 nucleoside diphosphate kinase 6 |
| NMI | N-myc (and STAT) interactor |
| NSD1 | nuclear receptor binding SET domain protein 1 |
| NUP62 | nucleoporin 62kDa |
| PALMD | palmdelphin |
| PLAU | plasminogen activator, urokinase |
| PLK1 | polo-like kinase 1 |
| PPRC1 | peroxisome proliferator-activated receptor gamma, coactivator-related 1 |
| RBM23 | RNA binding motif protein 23 |
| RIN2 | Ras and Rab interactor 2 |
| RNF2 | ring finger protein 2 |
| RPRD2 | regulation of nuclear pre-mRNA domain containing 2 |
| SAYSD1 | SAYSVFN motif domain containing 1 |
| SCAF8 | SR-related CTD-associated factor 8 |
| SCGB2A2 | secretoglobin, family 2A, member 2 |
| SENP6 | SUMO1/sentrin specific peptidase 6 |
| SERPINH1 | serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1) |
| SETD1B | SET domain containing 1B |
| SIM2 | single-minded family bHLH transcription factor 2 |
| SLC9A8 | solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8 |
| SMAGP | small cell adhesion glycoprotein |
| SMG9 | SMG9 nonsense mediated mRNA decay factor |
| SMPDL3A | sphingomyelin phosphodiesterase, acid-like 3A |
| SPHK1 | sphingosine kinase 1 |
| SRSF4 | serine/arginine-rich splicing factor 4 |
| SUV39H1 | suppressor of variegation 3-9 homolog 1 (Drosophila) |
| TGFB1I1 | transforming growth factor beta 1 induced transcript 1 |
| THRAP3 | thyroid hormone receptor associated protein 3 |
| TLR2 | toll-like receptor 2 |
| TMED1 | transmembrane emp24 protein transport domain containing 1 |
| TRIB3 | tribbles pseudokinase 3 |
| TSSC4 | tumor suppressing subtransferable candidate 4 |
| USP21 | ubiquitin specific peptidase 21 |
| VEGFC | vascular endothelial growth factor C |
| VWA9 | von Willebrand factor A domain containing 9 |
| ZBED1 | zinc finger, BED-type containing 1 |
| ZBTB3 | zinc finger and BTB domain containing 3 |
| ZC3H4 | zinc finger CCCH-type containing 4 |
| ZC3H7A | zinc finger CCCH-type containing 7A |
| ZNF165 | zinc finger protein 165 |
| ZNF32 | zinc finger protein 32 |
| ZNF675 | zinc finger protein 675 |
| ZNF692 | zinc finger protein 692 |
| ZNF74 | zinc finger protein 74 |
| ZNF804A | zinc finger protein 804A |
| ZZZ3 | zinc finger, ZZ-type containing 3 |
