| Dataset | CMAP Signatures of Differentially Expressed Genes for Small Molecules |
| Category | transcriptomics |
| Type | small molecule perturbation |
| Description | small molecule perturbation identified as [small molecule name]-[perturbation ID] (ChIP-X Enrichment Analysis) |
| Similar Terms | |
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200 genes differentially expressed following the trichostatin A-3993 small molecule perturbation from the CMAP Signatures of Differentially Expressed Genes for Small Molecules dataset.
| Symbol | Name |
|---|---|
| ABAT | 4-aminobutyrate aminotransferase |
| ABCA1 | ATP-binding cassette, sub-family A (ABC1), member 1 |
| ABCG1 | ATP-binding cassette, sub-family G (WHITE), member 1 |
| ABTB2 | ankyrin repeat and BTB (POZ) domain containing 2 |
| AGTR1 | angiotensin II receptor, type 1 |
| AQP3 | aquaporin 3 (Gill blood group) |
| ARG2 | arginase 2 |
| ARNTL | aryl hydrocarbon receptor nuclear translocator-like |
| ASAP3 | ArfGAP with SH3 domain, ankyrin repeat and PH domain 3 |
| ASMTL | acetylserotonin O-methyltransferase-like |
| AVPI1 | arginine vasopressin-induced 1 |
| BAIAP2 | BAI1-associated protein 2 |
| BAMBI | BMP and activin membrane-bound inhibitor |
| BCL6 | B-cell CLL/lymphoma 6 |
| BMP2 | bone morphogenetic protein 2 |
| CA5B | carbonic anhydrase VB, mitochondrial |
| CD82 | CD82 molecule |
| CDC14B | cell division cycle 14B |
| CDC42EP3 | CDC42 effector protein (Rho GTPase binding) 3 |
| CDKN1A | cyclin-dependent kinase inhibitor 1A (p21, Cip1) |
| CHCHD7 | coiled-coil-helix-coiled-coil-helix domain containing 7 |
| CITED1 | Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1 |
| COBL | cordon-bleu WH2 repeat protein |
| CORO1A | coronin, actin binding protein, 1A |
| CPM | carboxypeptidase M |
| CREB3L1 | cAMP responsive element binding protein 3-like 1 |
| CRISPLD2 | cysteine-rich secretory protein LCCL domain containing 2 |
| CTGF | connective tissue growth factor |
| CTH | cystathionine gamma-lyase |
| CYP46A1 | cytochrome P450, family 46, subfamily A, polypeptide 1 |
| DENND3 | DENN/MADD domain containing 3 |
| DFNB31 | deafness, autosomal recessive 31 |
| DNAJC12 | DnaJ (Hsp40) homolog, subfamily C, member 12 |
| DNMT3B | DNA (cytosine-5-)-methyltransferase 3 beta |
| DUSP1 | dual specificity phosphatase 1 |
| DUSP10 | dual specificity phosphatase 10 |
| EFNA3 | ephrin-A3 |
| EFNB2 | ephrin-B2 |
| EGR2 | early growth response 2 |
| ELF3 | E74-like factor 3 (ets domain transcription factor, epithelial-specific ) |
| ENPP2 | ectonucleotide pyrophosphatase/phosphodiesterase 2 |
| EPPK1 | epiplakin 1 |
| EXT1 | exostosin glycosyltransferase 1 |
| FABP4 | fatty acid binding protein 4, adipocyte |
| FAM134B | family with sequence similarity 134, member B |
| GMPR | guanosine monophosphate reductase |
| GSDMB | gasdermin B |
| HOXA1 | homeobox A1 |
| IL18R1 | interleukin 18 receptor 1 |
| IRF6 | interferon regulatory factor 6 |
| IRS2 | insulin receptor substrate 2 |
| ITGA7 | integrin, alpha 7 |
| KCNJ2 | potassium channel, inwardly rectifying subfamily J, member 2 |
| KIF5C | kinesin family member 5C |
| LINC00312 | long intergenic non-protein coding RNA 312 |
| LINC00341 | long intergenic non-protein coding RNA 341 |
| LMCD1 | LIM and cysteine-rich domains 1 |
| LPPR4 | lipid phosphate phosphatase-related protein type 4 |
| MAK | male germ cell-associated kinase |
| MAN1C1 | mannosidase, alpha, class 1C, member 1 |
| MAPRE2 | microtubule-associated protein, RP/EB family, member 2 |
| MMP1 | matrix metallopeptidase 1 |
| MMP13 | matrix metallopeptidase 13 |
| NEAT1 | nuclear paraspeckle assembly transcript 1 (non-protein coding) |
| NEDD4L | neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase |
| NEDD9 | neural precursor cell expressed, developmentally down-regulated 9 |
| NMT2 | N-myristoyltransferase 2 |
| NPC1 | Niemann-Pick disease, type C1 |
| PCDH17 | protocadherin 17 |
| PCDH9 | protocadherin 9 |
| PDE4DIP | phosphodiesterase 4D interacting protein |
| PDGFRA | platelet-derived growth factor receptor, alpha polypeptide |
| PI4K2A | phosphatidylinositol 4-kinase type 2 alpha |
| PRKAR2B | protein kinase, cAMP-dependent, regulatory, type II, beta |
| PTGER4 | prostaglandin E receptor 4 (subtype EP4) |
| RAB11FIP1 | RAB11 family interacting protein 1 (class I) |
| RAI2 | retinoic acid induced 2 |
| RALGPS2 | Ral GEF with PH domain and SH3 binding motif 2 |
| RGL1 | ral guanine nucleotide dissociation stimulator-like 1 |
| RGS17 | regulator of G-protein signaling 17 |
| RGS4 | regulator of G-protein signaling 4 |
| RHOB | ras homolog family member B |
| RND1 | Rho family GTPase 1 |
| SERPINI1 | serpin peptidase inhibitor, clade I (neuroserpin), member 1 |
| SORBS1 | sorbin and SH3 domain containing 1 |
| ST3GAL5 | ST3 beta-galactoside alpha-2,3-sialyltransferase 5 |
| STC1 | stanniocalcin 1 |
| STOM | stomatin |
| STON1 | stonin 1 |
| SYT1 | synaptotagmin I |
| SYT11 | synaptotagmin XI |
| TAOK3 | TAO kinase 3 |
| TESK2 | testis-specific kinase 2 |
| TNFAIP3 | tumor necrosis factor, alpha-induced protein 3 |
| TNIK | TRAF2 and NCK interacting kinase |
| TNS1 | tensin 1 |
| TRIM36 | tripartite motif containing 36 |
| TRIM9 | tripartite motif containing 9 |
| TUBB2B | tubulin, beta 2B class IIb |
| TUFT1 | tuftelin 1 |
| Symbol | Name |
|---|---|
| ADNP | activity-dependent neuroprotector homeobox |
| AP4M1 | adaptor-related protein complex 4, mu 1 subunit |
| AP5S1 | adaptor-related protein complex 5, sigma 1 subunit |
| ARSJ | arylsulfatase family, member J |
| BCAR3 | breast cancer anti-estrogen resistance 3 |
| BCL7A | B-cell CLL/lymphoma 7A |
| BNC2 | basonuclin 2 |
| CABYR | calcium binding tyrosine-(Y)-phosphorylation regulated |
| CAND2 | cullin-associated and neddylation-dissociated 2 (putative) |
| CASD1 | CAS1 domain containing 1 |
| CBR3 | carbonyl reductase 3 |
| CCDC51 | coiled-coil domain containing 51 |
| CCDC59 | coiled-coil domain containing 59 |
| CCNJL | cyclin J-like |
| CDC42EP1 | CDC42 effector protein (Rho GTPase binding) 1 |
| CDK5RAP2 | CDK5 regulatory subunit associated protein 2 |
| COIL | coilin |
| CTCF | CCCTC-binding factor (zinc finger protein) |
| CTPS1 | CTP synthase 1 |
| CUL1 | cullin 1 |
| DEF6 | differentially expressed in FDCP 6 homolog (mouse) |
| DEPDC1 | DEP domain containing 1 |
| DHX35 | DEAH (Asp-Glu-Ala-His) box polypeptide 35 |
| DNAJC17 | DnaJ (Hsp40) homolog, subfamily C, member 17 |
| EEF2KMT | eukaryotic elongation factor 2 lysine methyltransferase |
| FAM57A | family with sequence similarity 57, member A |
| FANCC | Fanconi anemia, complementation group C |
| FJX1 | four jointed box 1 (Drosophila) |
| FOSL1 | FOS-like antigen 1 |
| FOXA1 | forkhead box A1 |
| FST | follistatin |
| FZD8 | frizzled class receptor 8 |
| GABPA | GA binding protein transcription factor, alpha subunit 60kDa |
| GBX2 | gastrulation brain homeobox 2 |
| GMEB1 | glucocorticoid modulatory element binding protein 1 |
| HAS2 | hyaluronan synthase 2 |
| HDAC7 | histone deacetylase 7 |
| HMGA2 | high mobility group AT-hook 2 |
| HSPB8 | heat shock 22kDa protein 8 |
| IFIT2 | interferon-induced protein with tetratricopeptide repeats 2 |
| INHBB | inhibin, beta B |
| ITPKC | inositol-trisphosphate 3-kinase C |
| KAT6B | K(lysine) acetyltransferase 6B |
| KBTBD11 | kelch repeat and BTB (POZ) domain containing 11 |
| KDM4D | lysine (K)-specific demethylase 4D |
| KEAP1 | kelch-like ECH-associated protein 1 |
| LIF | leukemia inhibitory factor |
| LMNB1 | lamin B1 |
| LPAR1 | lysophosphatidic acid receptor 1 |
| MED18 | mediator complex subunit 18 |
| MEPCE | methylphosphate capping enzyme |
| METTL4 | methyltransferase like 4 |
| NDP | Norrie disease (pseudoglioma) |
| NLRX1 | NLR family member X1 |
| NSD1 | nuclear receptor binding SET domain protein 1 |
| NUP62 | nucleoporin 62kDa |
| NUPR1 | nuclear protein, transcriptional regulator, 1 |
| PAGR1 | PAXIP1 associated glutamate-rich protein 1 |
| PALMD | palmdelphin |
| PAN2 | PAN2 poly(A) specific ribonuclease subunit |
| PLAU | plasminogen activator, urokinase |
| PPAN | peter pan homolog (Drosophila) |
| PPAP2B | phosphatidic acid phosphatase type 2B |
| PTPN9 | protein tyrosine phosphatase, non-receptor type 9 |
| RBM23 | RNA binding motif protein 23 |
| RCBTB2 | regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 |
| RIN2 | Ras and Rab interactor 2 |
| RNF126P1 | ring finger protein 126 pseudogene 1 |
| RPRD2 | regulation of nuclear pre-mRNA domain containing 2 |
| SCAF8 | SR-related CTD-associated factor 8 |
| SERPINH1 | serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1) |
| SETD1B | SET domain containing 1B |
| SETD8 | SET domain containing (lysine methyltransferase) 8 |
| SMAGP | small cell adhesion glycoprotein |
| SMARCAL1 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 |
| SMG9 | SMG9 nonsense mediated mRNA decay factor |
| SMPDL3A | sphingomyelin phosphodiesterase, acid-like 3A |
| SMYD5 | SMYD family member 5 |
| SOX12 | SRY (sex determining region Y)-box 12 |
| SRSF4 | serine/arginine-rich splicing factor 4 |
| STAG1 | stromal antigen 1 |
| SUV39H1 | suppressor of variegation 3-9 homolog 1 (Drosophila) |
| TACO1 | translational activator of mitochondrially encoded cytochrome c oxidase I |
| TARBP2 | TAR (HIV-1) RNA binding protein 2 |
| TMC5 | transmembrane channel-like 5 |
| TMED1 | transmembrane emp24 protein transport domain containing 1 |
| TNFRSF12A | tumor necrosis factor receptor superfamily, member 12A |
| TRABD | TraB domain containing |
| TRIM21 | tripartite motif containing 21 |
| TSKU | tsukushi, small leucine rich proteoglycan |
| TTC4 | tetratricopeptide repeat domain 4 |
| TUBGCP3 | tubulin, gamma complex associated protein 3 |
| UBTF | upstream binding transcription factor, RNA polymerase I |
| URGCP | upregulator of cell proliferation |
| VEGFC | vascular endothelial growth factor C |
| VWA9 | von Willebrand factor A domain containing 9 |
| ZC3H4 | zinc finger CCCH-type containing 4 |
| ZFP30 | ZFP30 zinc finger protein |
| ZNF32 | zinc finger protein 32 |
| ZSCAN31 | zinc finger and SCAN domain containing 31 |
