| Dataset | CMAP Signatures of Differentially Expressed Genes for Small Molecules |
| Category | transcriptomics |
| Type | small molecule perturbation |
| Description | small molecule perturbation identified as [small molecule name]-[perturbation ID] (ChIP-X Enrichment Analysis) |
| Similar Terms | |
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198 genes differentially expressed following the trichostatin A-4770 small molecule perturbation from the CMAP Signatures of Differentially Expressed Genes for Small Molecules dataset.
| Symbol | Name |
|---|---|
| ACSBG1 | acyl-CoA synthetase bubblegum family member 1 |
| ACSF2 | acyl-CoA synthetase family member 2 |
| ADD3 | adducin 3 (gamma) |
| ADM | adrenomedullin |
| AHNAK2 | AHNAK nucleoprotein 2 |
| ARMCX2 | armadillo repeat containing, X-linked 2 |
| ASAP3 | ArfGAP with SH3 domain, ankyrin repeat and PH domain 3 |
| BAIAP3 | BAI1-associated protein 3 |
| BTN3A1 | butyrophilin, subfamily 3, member A1 |
| C19ORF66 | chromosome 19 open reading frame 66 |
| CACNA1G | calcium channel, voltage-dependent, T type, alpha 1G subunit |
| CALD1 | caldesmon 1 |
| CASC1 | cancer susceptibility candidate 1 |
| CDK5R2 | cyclin-dependent kinase 5, regulatory subunit 2 (p39) |
| CDKN1C | cyclin-dependent kinase inhibitor 1C (p57, Kip2) |
| CDKN2D | cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) |
| CLGN | calmegin |
| CORO1A | coronin, actin binding protein, 1A |
| CRISPLD2 | cysteine-rich secretory protein LCCL domain containing 2 |
| CXADR | coxsackie virus and adenovirus receptor |
| CYLD | cylindromatosis (turban tumor syndrome) |
| CYP46A1 | cytochrome P450, family 46, subfamily A, polypeptide 1 |
| DENND3 | DENN/MADD domain containing 3 |
| DHRS2 | dehydrogenase/reductase (SDR family) member 2 |
| DNAJC12 | DnaJ (Hsp40) homolog, subfamily C, member 12 |
| DPYSL4 | dihydropyrimidinase-like 4 |
| DUSP10 | dual specificity phosphatase 10 |
| EFNA3 | ephrin-A3 |
| EFNB3 | ephrin-B3 |
| EPHB2 | EPH receptor B2 |
| EPOR | erythropoietin receptor |
| FAM13A | family with sequence similarity 13, member A |
| FKBP1B | FK506 binding protein 1B, 12.6 kDa |
| FSCN1 | fascin actin-bundling protein 1 |
| FYN | FYN proto-oncogene, Src family tyrosine kinase |
| GEM | GTP binding protein overexpressed in skeletal muscle |
| GLDC | glycine dehydrogenase (decarboxylating) |
| GLRX | glutaredoxin (thioltransferase) |
| GRK5 | G protein-coupled receptor kinase 5 |
| GTF2B | general transcription factor IIB |
| HEY1 | hes-related family bHLH transcription factor with YRPW motif 1 |
| HLA-DQB1 | major histocompatibility complex, class II, DQ beta 1 |
| HOXA1 | homeobox A1 |
| HSPA12A | heat shock 70kDa protein 12A |
| ITPR1 | inositol 1,4,5-trisphosphate receptor, type 1 |
| KCND3 | potassium channel, voltage gated Shal related subfamily D, member 3 |
| KIF5C | kinesin family member 5C |
| LIMA1 | LIM domain and actin binding 1 |
| LINC00341 | long intergenic non-protein coding RNA 341 |
| MAOA | monoamine oxidase A |
| MAP1B | microtubule-associated protein 1B |
| MAPRE2 | microtubule-associated protein, RP/EB family, member 2 |
| MARK4 | MAP/microtubule affinity-regulating kinase 4 |
| MAST3 | microtubule associated serine/threonine kinase 3 |
| MMD | monocyte to macrophage differentiation-associated |
| MPP2 | membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2) |
| MXI1 | MAX interactor 1, dimerization protein |
| NES | nestin |
| NPC1 | Niemann-Pick disease, type C1 |
| NUDT11 | nudix (nucleoside diphosphate linked moiety X)-type motif 11 |
| NXN | nucleoredoxin |
| OLFML2A | olfactomedin-like 2A |
| PAIP2B | poly(A) binding protein interacting protein 2B |
| PIK3CD | phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta |
| PKNOX2 | PBX/knotted 1 homeobox 2 |
| PLAC1 | placenta-specific 1 |
| PPP2R5B | protein phosphatase 2, regulatory subunit B', beta |
| PRPH | peripherin |
| PSMB9 | proteasome (prosome, macropain) subunit, beta type, 9 |
| RAB40B | RAB40B, member RAS oncogene family |
| RAI2 | retinoic acid induced 2 |
| RASGRP2 | RAS guanyl releasing protein 2 (calcium and DAG-regulated) |
| RGL1 | ral guanine nucleotide dissociation stimulator-like 1 |
| RGS2 | regulator of G-protein signaling 2 |
| RPL3L | ribosomal protein L3-like |
| RUNDC3B | RUN domain containing 3B |
| SAT1 | spermidine/spermine N1-acetyltransferase 1 |
| SEPP1 | selenoprotein P, plasma, 1 |
| SERPINB9 | serpin peptidase inhibitor, clade B (ovalbumin), member 9 |
| SERPINI1 | serpin peptidase inhibitor, clade I (neuroserpin), member 1 |
| SH3GL3 | SH3-domain GRB2-like 3 |
| SIRT4 | sirtuin 4 |
| SLC17A7 | solute carrier family 17 (vesicular glutamate transporter), member 7 |
| SLC30A3 | solute carrier family 30 (zinc transporter), member 3 |
| SRGAP3 | SLIT-ROBO Rho GTPase activating protein 3 |
| ST3GAL5 | ST3 beta-galactoside alpha-2,3-sialyltransferase 5 |
| ST6GAL1 | ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 |
| STON1 | stonin 1 |
| STXBP1 | syntaxin binding protein 1 |
| SYT11 | synaptotagmin XI |
| TBXA2R | thromboxane A2 receptor |
| TMPRSS4 | transmembrane protease, serine 4 |
| TUFT1 | tuftelin 1 |
| UPK3A | uroplakin 3A |
| WDR47 | WD repeat domain 47 |
| ZCCHC24 | zinc finger, CCHC domain containing 24 |
| ZNF10 | zinc finger protein 10 |
| ZNF204P | zinc finger protein 204, pseudogene |
| Symbol | Name |
|---|---|
| ACKR3 | atypical chemokine receptor 3 |
| ADNP | activity-dependent neuroprotector homeobox |
| AKAP8 | A kinase (PRKA) anchor protein 8 |
| AMIGO2 | adhesion molecule with Ig-like domain 2 |
| AP5S1 | adaptor-related protein complex 5, sigma 1 subunit |
| BCAR3 | breast cancer anti-estrogen resistance 3 |
| BCL2L2 | BCL2-like 2 |
| BRINP3 | bone morphogenetic protein/retinoic acid inducible neural-specific 3 |
| BRIX1 | BRX1, biogenesis of ribosomes |
| C9ORF91 | chromosome 9 open reading frame 91 |
| CALHM2 | calcium homeostasis modulator 2 |
| CARD8 | caspase recruitment domain family, member 8 |
| CBFA2T3 | core-binding factor, runt domain, alpha subunit 2; translocated to, 3 |
| CCND1 | cyclin D1 |
| CDC7 | cell division cycle 7 |
| CDT1 | chromatin licensing and DNA replication factor 1 |
| COA7 | cytochrome c oxidase assembly factor 7 (putative) |
| COIL | coilin |
| CTDSP1 | CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 |
| DDX56 | DEAD (Asp-Glu-Ala-Asp) box helicase 56 |
| DDX6 | DEAD (Asp-Glu-Ala-Asp) box helicase 6 |
| DKK1 | dickkopf WNT signaling pathway inhibitor 1 |
| DNAJC22 | DnaJ (Hsp40) homolog, subfamily C, member 22 |
| EGR3 | early growth response 3 |
| FAIM | Fas apoptotic inhibitory molecule |
| FAM57A | family with sequence similarity 57, member A |
| FJX1 | four jointed box 1 (Drosophila) |
| FOXD1 | forkhead box D1 |
| FXN | frataxin |
| GABPB1 | GA binding protein transcription factor, beta subunit 1 |
| GPHN | gephyrin |
| HIRIP3 | HIRA interacting protein 3 |
| INHBB | inhibin, beta B |
| IRF2 | interferon regulatory factor 2 |
| IRS1 | insulin receptor substrate 1 |
| IRX5 | iroquois homeobox 5 |
| KEAP1 | kelch-like ECH-associated protein 1 |
| KIAA0125 | KIAA0125 |
| LMNB1 | lamin B1 |
| LRFN3 | leucine rich repeat and fibronectin type III domain containing 3 |
| LTBR | lymphotoxin beta receptor (TNFR superfamily, member 3) |
| LUC7L2 | LUC7-like 2 (S. cerevisiae) |
| LY6G5C | lymphocyte antigen 6 complex, locus G5C |
| MEPCE | methylphosphate capping enzyme |
| METTL4 | methyltransferase like 4 |
| MPDU1 | mannose-P-dolichol utilization defect 1 |
| MSL1 | male-specific lethal 1 homolog (Drosophila) |
| MYD88 | myeloid differentiation primary response 88 |
| NFKB1 | nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 |
| NRIP1 | nuclear receptor interacting protein 1 |
| NSMAF | neutral sphingomyelinase (N-SMase) activation associated factor |
| NUAK1 | NUAK family, SNF1-like kinase, 1 |
| P2RY6 | pyrimidinergic receptor P2Y, G-protein coupled, 6 |
| PDGFA | platelet-derived growth factor alpha polypeptide |
| PLK1 | polo-like kinase 1 |
| POGK | pogo transposable element with KRAB domain |
| PPAN | peter pan homolog (Drosophila) |
| PTBP2 | polypyrimidine tract binding protein 2 |
| PUS1 | pseudouridylate synthase 1 |
| RASGRP1 | RAS guanyl releasing protein 1 (calcium and DAG-regulated) |
| RBL1 | retinoblastoma-like 1 |
| RBM23 | RNA binding motif protein 23 |
| RMND1 | required for meiotic nuclear division 1 homolog (S. cerevisiae) |
| RNF44 | ring finger protein 44 |
| SARS2 | seryl-tRNA synthetase 2, mitochondrial |
| SCRN1 | secernin 1 |
| SFMBT1 | Scm-like with four mbt domains 1 |
| SGCG | sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein) |
| SMAGP | small cell adhesion glycoprotein |
| SMEK2 | SMEK homolog 2, suppressor of mek1 (Dictyostelium) |
| SMG9 | SMG9 nonsense mediated mRNA decay factor |
| SNHG20 | small nucleolar RNA host gene 20 |
| SNHG3 | small nucleolar RNA host gene 3 |
| SREK1 | splicing regulatory glutamine/lysine-rich protein 1 |
| SRSF4 | serine/arginine-rich splicing factor 4 |
| ST3GAL1 | ST3 beta-galactoside alpha-2,3-sialyltransferase 1 |
| STC2 | stanniocalcin 2 |
| STRN4 | striatin, calmodulin binding protein 4 |
| TAF1A | TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa |
| TCERG1 | transcription elongation regulator 1 |
| THEM6 | thioesterase superfamily member 6 |
| TKFC | triokinase/FMN cyclase |
| TPTE | transmembrane phosphatase with tensin homology |
| TRIB3 | tribbles pseudokinase 3 |
| TRIM16 | tripartite motif containing 16 |
| TRIM8 | tripartite motif containing 8 |
| TRPS1 | trichorhinophalangeal syndrome I |
| TSKU | tsukushi, small leucine rich proteoglycan |
| TTC17 | tetratricopeptide repeat domain 17 |
| UBXN8 | UBX domain protein 8 |
| UCK2 | uridine-cytidine kinase 2 |
| UNKL | unkempt family zinc finger-like |
| USP21 | ubiquitin specific peptidase 21 |
| VPS54 | vacuolar protein sorting 54 homolog (S. cerevisiae) |
| VRK2 | vaccinia related kinase 2 |
| WARS2 | tryptophanyl tRNA synthetase 2, mitochondrial |
| XBP1 | X-box binding protein 1 |
| YAP1 | Yes-associated protein 1 |
| ZIC1 | Zic family member 1 |
| ZNF652 | zinc finger protein 652 |
