| Dataset | CMAP Signatures of Differentially Expressed Genes for Small Molecules |
| Category | transcriptomics |
| Type | small molecule perturbation |
| Description | small molecule perturbation identified as [small molecule name]-[perturbation ID] (ChIP-X Enrichment Analysis) |
| Similar Terms | |
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200 genes differentially expressed following the trichostatin A-6951 small molecule perturbation from the CMAP Signatures of Differentially Expressed Genes for Small Molecules dataset.
| Symbol | Name |
|---|---|
| ACSBG1 | acyl-CoA synthetase bubblegum family member 1 |
| ACSF2 | acyl-CoA synthetase family member 2 |
| AHNAK2 | AHNAK nucleoprotein 2 |
| AKAP12 | A kinase (PRKA) anchor protein 12 |
| ALDOC | aldolase C, fructose-bisphosphate |
| ARMCX2 | armadillo repeat containing, X-linked 2 |
| BAIAP2 | BAI1-associated protein 2 |
| BAIAP3 | BAI1-associated protein 3 |
| CCDC28A | coiled-coil domain containing 28A |
| CCNA1 | cyclin A1 |
| CDKN1C | cyclin-dependent kinase inhibitor 1C (p57, Kip2) |
| CDKN2D | cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) |
| CORO1A | coronin, actin binding protein, 1A |
| CRISPLD2 | cysteine-rich secretory protein LCCL domain containing 2 |
| CXADR | coxsackie virus and adenovirus receptor |
| CYB5R1 | cytochrome b5 reductase 1 |
| CYLD | cylindromatosis (turban tumor syndrome) |
| CYP46A1 | cytochrome P450, family 46, subfamily A, polypeptide 1 |
| CYP4F2 | cytochrome P450, family 4, subfamily F, polypeptide 2 |
| DEGS1 | delta(4)-desaturase, sphingolipid 1 |
| DHRS2 | dehydrogenase/reductase (SDR family) member 2 |
| DNAJB4 | DnaJ (Hsp40) homolog, subfamily B, member 4 |
| DNAJC12 | DnaJ (Hsp40) homolog, subfamily C, member 12 |
| DNAJC6 | DnaJ (Hsp40) homolog, subfamily C, member 6 |
| DPYSL4 | dihydropyrimidinase-like 4 |
| EPOR | erythropoietin receptor |
| FKBP1B | FK506 binding protein 1B, 12.6 kDa |
| FSCN1 | fascin actin-bundling protein 1 |
| FYN | FYN proto-oncogene, Src family tyrosine kinase |
| GEM | GTP binding protein overexpressed in skeletal muscle |
| GFPT2 | glutamine-fructose-6-phosphate transaminase 2 |
| GLRX | glutaredoxin (thioltransferase) |
| GLS | glutaminase |
| GRK5 | G protein-coupled receptor kinase 5 |
| GSDMB | gasdermin B |
| GTF2B | general transcription factor IIB |
| HEY1 | hes-related family bHLH transcription factor with YRPW motif 1 |
| HIC2 | hypermethylated in cancer 2 |
| HMHA1 | histocompatibility (minor) HA-1 |
| HSPA2 | heat shock 70kDa protein 2 |
| ISG15 | ISG15 ubiquitin-like modifier |
| KIF5C | kinesin family member 5C |
| LIMA1 | LIM domain and actin binding 1 |
| LYST | lysosomal trafficking regulator |
| MAP1A | microtubule-associated protein 1A |
| MAP1B | microtubule-associated protein 1B |
| MAPRE2 | microtubule-associated protein, RP/EB family, member 2 |
| MARK4 | MAP/microtubule affinity-regulating kinase 4 |
| MLF1 | myeloid leukemia factor 1 |
| MMD | monocyte to macrophage differentiation-associated |
| MXRA7 | matrix-remodelling associated 7 |
| NEAT1 | nuclear paraspeckle assembly transcript 1 (non-protein coding) |
| NEDD9 | neural precursor cell expressed, developmentally down-regulated 9 |
| NEU1 | sialidase 1 (lysosomal sialidase) |
| NME7 | NME/NM23 family member 7 |
| NPC1 | Niemann-Pick disease, type C1 |
| NXN | nucleoredoxin |
| OPTN | optineurin |
| PADI3 | peptidyl arginine deiminase, type III |
| PARP16 | poly (ADP-ribose) polymerase family, member 16 |
| PCDH9 | protocadherin 9 |
| PDE4A | phosphodiesterase 4A, cAMP-specific |
| PER1 | period circadian clock 1 |
| PIK3CD | phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta |
| PRPH | peripherin |
| RAB40B | RAB40B, member RAS oncogene family |
| RASGRP2 | RAS guanyl releasing protein 2 (calcium and DAG-regulated) |
| RGL1 | ral guanine nucleotide dissociation stimulator-like 1 |
| RGS2 | regulator of G-protein signaling 2 |
| RIMS3 | regulating synaptic membrane exocytosis 3 |
| RIPK4 | receptor-interacting serine-threonine kinase 4 |
| RNF19B | ring finger protein 19B |
| RPL3L | ribosomal protein L3-like |
| RTN2 | reticulon 2 |
| RUNDC3B | RUN domain containing 3B |
| SAT1 | spermidine/spermine N1-acetyltransferase 1 |
| SEPP1 | selenoprotein P, plasma, 1 |
| SERPINB9 | serpin peptidase inhibitor, clade B (ovalbumin), member 9 |
| SERPINI1 | serpin peptidase inhibitor, clade I (neuroserpin), member 1 |
| SH3GL3 | SH3-domain GRB2-like 3 |
| SIRT4 | sirtuin 4 |
| SLC17A7 | solute carrier family 17 (vesicular glutamate transporter), member 7 |
| SLC25A44 | solute carrier family 25, member 44 |
| SLC30A3 | solute carrier family 30 (zinc transporter), member 3 |
| SOX9 | SRY (sex determining region Y)-box 9 |
| ST3GAL5 | ST3 beta-galactoside alpha-2,3-sialyltransferase 5 |
| STON1 | stonin 1 |
| SYT11 | synaptotagmin XI |
| TMSB15A | thymosin beta 15a |
| TUBA4A | tubulin, alpha 4a |
| TUFT1 | tuftelin 1 |
| TXNIP | thioredoxin interacting protein |
| ULBP2 | UL16 binding protein 2 |
| VAMP1 | vesicle-associated membrane protein 1 (synaptobrevin 1) |
| WDR19 | WD repeat domain 19 |
| WDR47 | WD repeat domain 47 |
| ZCCHC24 | zinc finger, CCHC domain containing 24 |
| ZDHHC11 | zinc finger, DHHC-type containing 11 |
| ZNF10 | zinc finger protein 10 |
| ZNF204P | zinc finger protein 204, pseudogene |
| Symbol | Name |
|---|---|
| ACKR3 | atypical chemokine receptor 3 |
| ADNP | activity-dependent neuroprotector homeobox |
| AMIGO2 | adhesion molecule with Ig-like domain 2 |
| AMOTL2 | angiomotin like 2 |
| AP5S1 | adaptor-related protein complex 5, sigma 1 subunit |
| ARHGEF5 | Rho guanine nucleotide exchange factor (GEF) 5 |
| ARNT2 | aryl-hydrocarbon receptor nuclear translocator 2 |
| BANP | BTG3 associated nuclear protein |
| BCAR3 | breast cancer anti-estrogen resistance 3 |
| BRINP3 | bone morphogenetic protein/retinoic acid inducible neural-specific 3 |
| BRIX1 | BRX1, biogenesis of ribosomes |
| C1ORF106 | chromosome 1 open reading frame 106 |
| CBFA2T3 | core-binding factor, runt domain, alpha subunit 2; translocated to, 3 |
| CBR3 | carbonyl reductase 3 |
| CCND1 | cyclin D1 |
| CDKN1B | cyclin-dependent kinase inhibitor 1B (p27, Kip1) |
| CHST15 | carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15 |
| CISH | cytokine inducible SH2-containing protein |
| COA7 | cytochrome c oxidase assembly factor 7 (putative) |
| COIL | coilin |
| CTCF | CCCTC-binding factor (zinc finger protein) |
| CTDSP1 | CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 |
| CUL1 | cullin 1 |
| DKK1 | dickkopf WNT signaling pathway inhibitor 1 |
| EFNA1 | ephrin-A1 |
| EGR3 | early growth response 3 |
| ELF4 | E74-like factor 4 (ets domain transcription factor) |
| ERBB2IP | erbb2 interacting protein |
| ESRP2 | epithelial splicing regulatory protein 2 |
| FJX1 | four jointed box 1 (Drosophila) |
| FOXA1 | forkhead box A1 |
| FOXC1 | forkhead box C1 |
| FOXD1 | forkhead box D1 |
| GABPB1 | GA binding protein transcription factor, beta subunit 1 |
| GALNT14 | polypeptide N-acetylgalactosaminyltransferase 14 |
| GATA3 | GATA binding protein 3 |
| GIN1 | gypsy retrotransposon integrase 1 |
| HOXC11 | homeobox C11 |
| INHBB | inhibin, beta B |
| IRS1 | insulin receptor substrate 1 |
| IRX5 | iroquois homeobox 5 |
| KBTBD4 | kelch repeat and BTB (POZ) domain containing 4 |
| KEAP1 | kelch-like ECH-associated protein 1 |
| KIAA0753 | KIAA0753 |
| LAMA5 | laminin, alpha 5 |
| LRFN4 | leucine rich repeat and fibronectin type III domain containing 4 |
| LUC7L2 | LUC7-like 2 (S. cerevisiae) |
| MCM9 | minichromosome maintenance complex component 9 |
| MEPCE | methylphosphate capping enzyme |
| METTL8 | methyltransferase like 8 |
| MSL1 | male-specific lethal 1 homolog (Drosophila) |
| MYC | v-myc avian myelocytomatosis viral oncogene homolog |
| NPY1R | neuropeptide Y receptor Y1 |
| NR2F2 | nuclear receptor subfamily 2, group F, member 2 |
| NRIP1 | nuclear receptor interacting protein 1 |
| NSD1 | nuclear receptor binding SET domain protein 1 |
| NUAK1 | NUAK family, SNF1-like kinase, 1 |
| PACSIN3 | protein kinase C and casein kinase substrate in neurons 3 |
| PHLDA3 | pleckstrin homology-like domain, family A, member 3 |
| PLK1 | polo-like kinase 1 |
| POGK | pogo transposable element with KRAB domain |
| POLR3B | polymerase (RNA) III (DNA directed) polypeptide B |
| PRR15L | proline rich 15-like |
| PRR3 | proline rich 3 |
| RASGRP1 | RAS guanyl releasing protein 1 (calcium and DAG-regulated) |
| RBM23 | RNA binding motif protein 23 |
| RPRD2 | regulation of nuclear pre-mRNA domain containing 2 |
| SEMA4C | sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C |
| SETD1B | SET domain containing 1B |
| SFMBT1 | Scm-like with four mbt domains 1 |
| SLC35F2 | solute carrier family 35, member F2 |
| SMAD7 | SMAD family member 7 |
| SPIN1 | spindlin 1 |
| SREK1 | splicing regulatory glutamine/lysine-rich protein 1 |
| SRSF4 | serine/arginine-rich splicing factor 4 |
| ST6GALNAC2 | ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 |
| STC2 | stanniocalcin 2 |
| SUV39H1 | suppressor of variegation 3-9 homolog 1 (Drosophila) |
| TCERG1 | transcription elongation regulator 1 |
| TGIF1 | TGFB-induced factor homeobox 1 |
| TMEM223 | transmembrane protein 223 |
| TMEM30B | transmembrane protein 30B |
| TNFRSF1A | tumor necrosis factor receptor superfamily, member 1A |
| TRIB3 | tribbles pseudokinase 3 |
| TRIM16 | tripartite motif containing 16 |
| TRIM8 | tripartite motif containing 8 |
| TRPS1 | trichorhinophalangeal syndrome I |
| TSKU | tsukushi, small leucine rich proteoglycan |
| UBTF | upstream binding transcription factor, RNA polymerase I |
| URB2 | URB2 ribosome biogenesis 2 homolog (S. cerevisiae) |
| URGCP | upregulator of cell proliferation |
| XBP1 | X-box binding protein 1 |
| YAP1 | Yes-associated protein 1 |
| YARS2 | tyrosyl-tRNA synthetase 2, mitochondrial |
| ZBED5 | zinc finger, BED-type containing 5 |
| ZC3H4 | zinc finger CCCH-type containing 4 |
| ZHX2 | zinc fingers and homeoboxes 2 |
| ZIC1 | Zic family member 1 |
| ZMIZ1 | zinc finger, MIZ-type containing 1 |
| ZNF692 | zinc finger protein 692 |
