typical Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
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Genes

342 genes co-occuring with the biological term typical in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase
ACTA1 actin, alpha 1, skeletal muscle
ADAMTS13 ADAM metallopeptidase with thrombospondin type 1 motif, 13
AIP aryl hydrocarbon receptor interacting protein
ALB albumin
ALDH3A2 aldehyde dehydrogenase 3 family, member A2
ALOXE3 arachidonate lipoxygenase 3
APC adenomatous polyposis coli
APOA1 apolipoprotein A-I
APOBEC3A apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A
APOE apolipoprotein E
APP amyloid beta (A4) precursor protein
AQP1 aquaporin 1 (Colton blood group)
AQP4 aquaporin 4
ARHGEF1 Rho guanine nucleotide exchange factor (GEF) 1
ARMS2 age-related maculopathy susceptibility 2
ASS1 argininosuccinate synthase 1
ATM ATM serine/threonine kinase
ATP13A2 ATPase type 13A2
ATP1A2 ATPase, Na+/K+ transporting, alpha 2 polypeptide
ATP2C1 ATPase, Ca++ transporting, type 2C, member 1
AURKC aurora kinase C
AVP arginine vasopressin
B3GALTL beta 1,3-galactosyltransferase-like
BBS1 Bardet-Biedl syndrome 1
BCOR BCL6 corepressor
BECN1 beclin 1, autophagy related
BEST1 bestrophin 1
BFSP2 beaded filament structural protein 2, phakinin
BTK Bruton agammaglobulinemia tyrosine kinase
C2 complement component 2
C9ORF72 chromosome 9 open reading frame 72
CACNA1A calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
CCDC88C coiled-coil domain containing 88C
CCL2 chemokine (C-C motif) ligand 2
CCL21 chemokine (C-C motif) ligand 21
CCNB3 cyclin B3
CCND1 cyclin D1
CCNE1 cyclin E1
CCNK cyclin K
CD14 CD14 molecule
CD24 CD24 molecule
CD36 CD36 molecule (thrombospondin receptor)
CD70 CD70 molecule
CDC42 cell division cycle 42
CDC73 cell division cycle 73
CDK5 cyclin-dependent kinase 5
CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1)
CDKN1B cyclin-dependent kinase inhibitor 1B (p27, Kip1)
CEACAM1 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)
CEP41 centrosomal protein 41kDa
CETP cholesteryl ester transfer protein, plasma
CFB complement factor B
CFH complement factor H
CGB chorionic gonadotropin, beta polypeptide
CHD7 chromodomain helicase DNA binding protein 7
CHEK1 checkpoint kinase 1
CHM choroideremia (Rab escort protein 1)
CHRNE cholinergic receptor, nicotinic, epsilon (muscle)
CHSY3 chondroitin sulfate synthase 3
CLCN4 chloride channel, voltage-sensitive 4
CLIP3 CAP-GLY domain containing linker protein 3
CLN8 ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)
CNTNAP2 contactin associated protein-like 2
COCH cochlin
COL1A1 collagen, type I, alpha 1
COL1A2 collagen, type I, alpha 2
COL2A1 collagen, type II, alpha 1
COL3A1 collagen, type III, alpha 1
COL4A5 collagen, type IV, alpha 5
COMT catechol-O-methyltransferase
COPG2 coatomer protein complex, subunit gamma 2
COX15 cytochrome c oxidase assembly homolog 15 (yeast)
COX7A1 cytochrome c oxidase subunit VIIa polypeptide 1 (muscle)
CPOX coproporphyrinogen oxidase
CRB1 crumbs family member 1, photoreceptor morphogenesis associated
CRK v-crk avian sarcoma virus CT10 oncogene homolog
CRKL v-crk avian sarcoma virus CT10 oncogene homolog-like
CSRP3 cysteine and glycine-rich protein 3 (cardiac LIM protein)
CTBP2 C-terminal binding protein 2
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa
CTSD cathepsin D
CXCL10 chemokine (C-X-C motif) ligand 10
CYB561D2 cytochrome b561 family, member D2
CYP11A1 cytochrome P450, family 11, subfamily A, polypeptide 1
CYP2D6 cytochrome P450, family 2, subfamily D, polypeptide 6
CYP4V2 cytochrome P450, family 4, subfamily V, polypeptide 2
CYSLTR2 cysteinyl leukotriene receptor 2
DHCR7 7-dehydrocholesterol reductase
DHODH dihydroorotate dehydrogenase (quinone)
DMPK dystrophia myotonica-protein kinase
DMTN dematin actin binding protein
DPY30 dpy-30 homolog (C. elegans)
DRD2 dopamine receptor D2
DRD3 dopamine receptor D3
DUSP4 dual specificity phosphatase 4
E2F1 E2F transcription factor 1
EDAR ectodysplasin A receptor
EGFR epidermal growth factor receptor
EGR2 early growth response 2
EIF2B4 eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa
ELOVL5 ELOVL fatty acid elongase 5
EMD emerin
EP300 E1A binding protein p300
ERBB2 erb-b2 receptor tyrosine kinase 2
ERBB3 erb-b2 receptor tyrosine kinase 3
ERBB4 erb-b2 receptor tyrosine kinase 4
ERCC1 excision repair cross-complementation group 1
ESR1 estrogen receptor 1
ETHE1 ethylmalonic encephalopathy 1
EVC Ellis van Creveld protein
FABP7 fatty acid binding protein 7, brain
FADD Fas (TNFRSF6)-associated via death domain
FAS Fas cell surface death receptor
FCER2 Fc fragment of IgE, low affinity II, receptor for (CD23)
FGF2 fibroblast growth factor 2 (basic)
FGFR3 fibroblast growth factor receptor 3
FKBP8 FK506 binding protein 8, 38kDa
FKRP fukutin related protein
FMO3 flavin containing monooxygenase 3
FTL ferritin, light polypeptide
FUS FUS RNA binding protein
FXN frataxin
G6PC3 glucose 6 phosphatase, catalytic, 3
GBA glucosidase, beta, acid
GC group-specific component (vitamin D binding protein)
GCK glucokinase (hexokinase 4)
GFAP glial fibrillary acidic protein
GFER growth factor, augmenter of liver regeneration
GH1 growth hormone 1
GJA1 gap junction protein, alpha 1, 43kDa
GJB2 gap junction protein, beta 2, 26kDa
GLI3 GLI family zinc finger 3
GNA13 guanine nucleotide binding protein (G protein), alpha 13
GRK1 G protein-coupled receptor kinase 1
GSTA1 glutathione S-transferase alpha 1
GSTA2 glutathione S-transferase alpha 2
GSTP1 glutathione S-transferase pi 1
GSTT1 glutathione S-transferase theta 1
GUCY2D guanylate cyclase 2D, membrane (retina-specific)
HBA1 hemoglobin, alpha 1
HCRT hypocretin (orexin) neuropeptide precursor
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)
HLA-DRB1 major histocompatibility complex, class II, DR beta 1
HMOX1 heme oxygenase 1
HNF1A HNF1 homeobox A
HNF4A hepatocyte nuclear factor 4, alpha
HPCAL1 hippocalcin-like 1
HR hair growth associated
HRAS Harvey rat sarcoma viral oncogene homolog
HSD11B2 hydroxysteroid (11-beta) dehydrogenase 2
HTR2A 5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled
HTR3A 5-hydroxytryptamine (serotonin) receptor 3A, ionotropic
HTRA1 HtrA serine peptidase 1
HTT huntingtin
IAPP islet amyloid polypeptide
IFNG interferon, gamma
IGF1 insulin-like growth factor 1 (somatomedin C)
IGFBP3 insulin-like growth factor binding protein 3
IKBKG inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma
IL10 interleukin 10
IL12A interleukin 12A
IL17A interleukin 17A
IL4 interleukin 4
INHBB inhibin, beta B
ITGAL integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
ITGB2 integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)
KAT6B K(lysine) acetyltransferase 6B
KCNE1 potassium channel, voltage gated subfamily E regulatory beta subunit 1
KCNIP1 Kv channel interacting protein 1
KCNJ2 potassium channel, inwardly rectifying subfamily J, member 2
KCNK18 potassium channel, two pore domain subfamily K, member 18
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1
KCNMB1 potassium channel subfamily M regulatory beta subunit 1
KCNQ1 potassium channel, voltage gated KQT-like subfamily Q, member 1
KCNQ4 potassium channel, voltage gated KQT-like subfamily Q, member 4
KLF4 Kruppel-like factor 4 (gut)
KMT2D lysine (K)-specific methyltransferase 2D
KRT17 keratin 17, type I
LAMA2 laminin, alpha 2
LILRB1 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1
LMNA lamin A/C
LMX1B LIM homeobox transcription factor 1, beta
LOR loricrin
LRAT lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase)
LRRK2 leucine-rich repeat kinase 2
LYVE1 lymphatic vessel endothelial hyaluronan receptor 1
MAP2K4 mitogen-activated protein kinase kinase 4
MAPK8 mitogen-activated protein kinase 8
MAPT microtubule-associated protein tau
MCOLN1 mucolipin 1
MECP2 methyl CpG binding protein 2
MEFV Mediterranean fever
MEN1 multiple endocrine neoplasia I
MEST mesoderm specific transcript
MFGE8 milk fat globule-EGF factor 8 protein
MKI67 marker of proliferation Ki-67
MLH1 mutL homolog 1
MMP12 matrix metallopeptidase 12
MMP14 matrix metallopeptidase 14 (membrane-inserted)
MMP15 matrix metallopeptidase 15 (membrane-inserted)
MMP16 matrix metallopeptidase 16 (membrane-inserted)
MMP17 matrix metallopeptidase 17 (membrane-inserted)
MMP24 matrix metallopeptidase 24 (membrane-inserted)
MMP9 matrix metallopeptidase 9
MNX1 motor neuron and pancreas homeobox 1
MPZ myelin protein zero
MSH2 mutS homolog 2
MT-TK tRNA
MTOR mechanistic target of rapamycin (serine/threonine kinase)
MUC1 mucin 1, cell surface associated
MYH7 myosin, heavy chain 7, cardiac muscle, beta
MYOT myotilin
MYP11 myopia 11 (high grade, autosomal dominant)
NACA nascent polypeptide-associated complex alpha subunit
NEB nebulin
NEFM neurofilament, medium polypeptide
NEU1 sialidase 1 (lysosomal sialidase)
NFKB1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1
NKAIN2 Na+/K+ transporting ATPase interacting 2
NKX3-1 NK3 homeobox 1
NLRC3 NLR family, CARD domain containing 3
NLRP3 NLR family, pyrin domain containing 3
NOD2 nucleotide-binding oligomerization domain containing 2
NOS3 nitric oxide synthase 3 (endothelial cell)
NOTCH2 notch 2
NOTCH3 notch 3
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin)
NR0B2 nuclear receptor subfamily 0, group B, member 2
NRG1 neuregulin 1
NSD1 nuclear receptor binding SET domain protein 1
NUP153 nucleoporin 153kDa
OLR1 oxidized low density lipoprotein (lectin-like) receptor 1
PARD6A par-6 family cell polarity regulator alpha
PARK2 parkin RBR E3 ubiquitin protein ligase
PAX5 paired box 5
PCSK9 proprotein convertase subtilisin/kexin type 9
PDCD10 programmed cell death 10
PFN1 profilin 1
PHB prohibitin
PIK3CA phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha
PINK1 PTEN induced putative kinase 1
PITX2 paired-like homeodomain 2
PIWIL1 piwi-like RNA-mediated gene silencing 1
PKHD1 polycystic kidney and hepatic disease 1 (autosomal recessive)
PLG plasminogen
PLIN1 perilipin 1
PLK1 polo-like kinase 1
PLP1 proteolipid protein 1
POC1B POC1 centriolar protein B
PORCN porcupine homolog (Drosophila)
POU5F1 POU class 5 homeobox 1
PRDX3 peroxiredoxin 3
PRF1 perforin 1 (pore forming protein)
PRNP prion protein
PRODH proline dehydrogenase (oxidase) 1
PSEN1 presenilin 1
PSMD7 proteasome (prosome, macropain) 26S subunit, non-ATPase, 7
PTBP2 polypyrimidine tract binding protein 2
PTGIS prostaglandin I2 (prostacyclin) synthase
PTPRC protein tyrosine phosphatase, receptor type, C
PTX3 pentraxin 3, long
QPCT glutaminyl-peptide cyclotransferase
RAPSN receptor-associated protein of the synapse
RARB retinoic acid receptor, beta
RASA1 RAS p21 protein activator (GTPase activating protein) 1
RAX retina and anterior neural fold homeobox
RB1 retinoblastoma 1
RCC1 regulator of chromosome condensation 1
RDH5 retinol dehydrogenase 5 (11-cis/9-cis)
REG4 regenerating islet-derived family, member 4
RELA v-rel avian reticuloendotheliosis viral oncogene homolog A
RET ret proto-oncogene
RGS4 regulator of G-protein signaling 4
RHOA ras homolog family member A
RHOBTB2 Rho-related BTB domain containing 2
ROGDI rogdi homolog (Drosophila)
RS1 retinoschisin 1
RUNX1 runt-related transcription factor 1
RUNX2 runt-related transcription factor 2
RYR1 ryanodine receptor 1 (skeletal)
S100A4 S100 calcium binding protein A4
SAA1 serum amyloid A1
SCARB2 scavenger receptor class B, member 2
SCN1A sodium channel, voltage gated, type I alpha subunit
SCN8A sodium channel, voltage gated, type VIII alpha subunit
SCN9A sodium channel, voltage gated, type IX alpha subunit
SDC1 syndecan 1
SECISBP2 SECIS binding protein 2
SETX senataxin
SHANK3 SH3 and multiple ankyrin repeat domains 3
SHOX short stature homeobox
SLC25A20 solute carrier family 25 (carnitine/acylcarnitine translocase), member 20
SLC31A1 solute carrier family 31 (copper transporter), member 1
SLC40A1 solute carrier family 40 (iron-regulated transporter), member 1
SLC5A1 solute carrier family 5 (sodium/glucose cotransporter), member 1
SLC6A19 solute carrier family 6 (neutral amino acid transporter), member 19
SLC6A3 solute carrier family 6 (neurotransmitter transporter), member 3
SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
SOX2 SRY (sex determining region Y)-box 2
SOX9 SRY (sex determining region Y)-box 9
SPAST spastin
SPATA7 spermatogenesis associated 7
SPHK1 sphingosine kinase 1
SPP1 secreted phosphoprotein 1
STAB2 stabilin 2
STAR steroidogenic acute regulatory protein
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor)
SUOX sulfite oxidase
TBC1D7 TBC1 domain family, member 7
TERF1 telomeric repeat binding factor (NIMA-interacting) 1
TERT telomerase reverse transcriptase
TET2 tet methylcytosine dioxygenase 2
TFF3 trefoil factor 3 (intestinal)
TGFB1 transforming growth factor, beta 1
TINF2 TERF1 (TRF1)-interacting nuclear factor 2
TLR2 toll-like receptor 2
TMC6 transmembrane channel-like 6
TMC8 transmembrane channel-like 8
TNC tenascin C
TNFRSF1A tumor necrosis factor receptor superfamily, member 1A
TNFRSF1B tumor necrosis factor receptor superfamily, member 1B
TNFSF10 tumor necrosis factor (ligand) superfamily, member 10
TP53 tumor protein p53
TP63 tumor protein p63
TRPC6 transient receptor potential cation channel, subfamily C, member 6
TSC2 tuberous sclerosis 2
TUBB4A tubulin, beta 4A class IVa
UBE3A ubiquitin protein ligase E3A
VDR vitamin D (1,25- dihydroxyvitamin D3) receptor
VEGFA vascular endothelial growth factor A
VEGFC vascular endothelial growth factor C
VPS13A vacuolar protein sorting 13 homolog A (S. cerevisiae)
VPS35 vacuolar protein sorting 35 homolog (S. cerevisiae)
VWF von Willebrand factor
WISP3 WNT1 inducible signaling pathway protein 3
WT1 Wilms tumor 1
XIAP X-linked inhibitor of apoptosis, E3 ubiquitin protein ligase
XK X-linked Kx blood group
ZBTB17 zinc finger and BTB domain containing 17
ZEB2 zinc finger E-box binding homeobox 2