u2 snrnp Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A ribonucleoprotein complex that contains small nuclear RNA U2. (Gene Ontology, GO_0005686)
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Genes

87 proteins co-occuring with the u2 snrnp cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
U2AF2 U2 small nuclear RNA auxiliary factor 2 2.51432
SF3A1 splicing factor 3a, subunit 1, 120kDa 2.16466
SF3A2 splicing factor 3a, subunit 2, 66kDa 2.07724
DDX46 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 1.93134
SF3B2 splicing factor 3b, subunit 2, 145kDa 1.81781
SMNDC1 survival motor neuron domain containing 1 1.47344
SNRPA small nuclear ribonucleoprotein polypeptide A 1.44912
SNRPA1 small nuclear ribonucleoprotein polypeptide A' 1.36857
PTBP1 polypyrimidine tract binding protein 1 1.29478
SF1 splicing factor 1 1.23713
PHF5A PHD finger protein 5A 1.21325
U2AF1 U2 small nuclear RNA auxiliary factor 1 1.20344
SF3B1 splicing factor 3b, subunit 1, 155kDa 1.13574
RBM39 RNA binding motif protein 39 1.10358
NDOR1 NADPH dependent diflavin oxidoreductase 1 0.964069
SRSF1 serine/arginine-rich splicing factor 1 0.936432
ESRP2 epithelial splicing regulatory protein 2 0.927013
SKAP2 src kinase associated phosphoprotein 2 0.917177
DDX47 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 0.90646
RPL30 ribosomal protein L30 0.905067
SMEK2 SMEK homolog 2, suppressor of mek1 (Dictyostelium) 0.878251
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.863068
DDX42 DEAD (Asp-Glu-Ala-Asp) box helicase 42 0.824959
SF3B4 splicing factor 3b, subunit 4, 49kDa 0.817616
SRSF5 serine/arginine-rich splicing factor 5 0.811652
PRPF8 pre-mRNA processing factor 8 0.799728
CHERP calcium homeostasis endoplasmic reticulum protein 0.792396
DHX15 DEAH (Asp-Glu-Ala-His) box helicase 15 0.787359
SF3B3 splicing factor 3b, subunit 3, 130kDa 0.776841
SRSF2 serine/arginine-rich splicing factor 2 0.770451
SNRNP70 small nuclear ribonucleoprotein 70kDa (U1) 0.76726
RBM25 RNA binding motif protein 25 0.748641
CRNKL1 crooked neck pre-mRNA splicing factor 1 0.710579
AQR aquarius intron-binding spliceosomal factor 0.69427
SMN1 survival of motor neuron 1, telomeric 0.685954
SKIV2L superkiller viralicidic activity 2-like (S. cerevisiae) 0.681155
CPSF3 cleavage and polyadenylation specific factor 3, 73kDa 0.662072
PUF60 poly-U binding splicing factor 60KDa 0.640573
SRRM2 serine/arginine repetitive matrix 2 0.624355
CELF2 CUGBP, Elav-like family member 2 0.623504
PRPF19 pre-mRNA processing factor 19 0.615437
BPTF bromodomain PHD finger transcription factor 0.596855
PRPF6 pre-mRNA processing factor 6 0.595173
SMN2 survival of motor neuron 2, centromeric 0.583849
HNRNPDL heterogeneous nuclear ribonucleoprotein D-like 0.553491
ASCC3 activating signal cointegrator 1 complex subunit 3 0.548535
PRPF18 pre-mRNA processing factor 18 0.54771
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 0.532898
TCERG1 transcription elongation regulator 1 0.531668
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) 0.508383
SLU7 SLU7 splicing factor homolog (S. cerevisiae) 0.497826
DDX19B DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B 0.477636
RNF2 ring finger protein 2 0.468001
TFIP11 tuftelin interacting protein 11 0.461998
HFM1 HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae) 0.457208
DDX1 DEAD (Asp-Glu-Ala-Asp) box helicase 1 0.451233
HNRNPF heterogeneous nuclear ribonucleoprotein F 0.444085
PRPF3 pre-mRNA processing factor 3 0.4425
GPR162 G protein-coupled receptor 162 0.439333
PCBP1 poly(rC) binding protein 1 0.431435
EIF4A3 eukaryotic translation initiation factor 4A3 0.40714
DHX8 DEAH (Asp-Glu-Ala-His) box polypeptide 8 0.39626
KAT2A K(lysine) acetyltransferase 2A 0.381199
LSM4 LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) 0.37045
FAM195A family with sequence similarity 195, member A 0.363567
EP400 E1A binding protein p400 0.358609
HNRNPL heterogeneous nuclear ribonucleoprotein L 0.350243
SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 16kDa 0.346071
DDB2 damage-specific DNA binding protein 2, 48kDa 0.343421
PNN pinin, desmosome associated protein 0.3227
MBNL1 muscleblind-like splicing regulator 1 0.307004
RNASE1 ribonuclease, RNase A family, 1 (pancreatic) 0.297713
GP1BA glycoprotein Ib (platelet), alpha polypeptide 0.279245
CHD1 chromodomain helicase DNA binding protein 1 0.274835
CCNA2 cyclin A2 0.240996
RPL32 ribosomal protein L32 0.236683
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.214714
EIF4E eukaryotic translation initiation factor 4E 0.204039
SRRM1 serine/arginine repetitive matrix 1 0.196999
TAF8 TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa 0.18516
KMT2A lysine (K)-specific methyltransferase 2A 0.181524
XPC xeroderma pigmentosum, complementation group C 0.174087
DDB1 damage-specific DNA binding protein 1, 127kDa 0.172735
NME1-NME2 NME1-NME2 readthrough 0.165697
SP6 Sp6 transcription factor 0.165
ANG angiogenin, ribonuclease, RNase A family, 5 0.162763
SHMT1 serine hydroxymethyltransferase 1 (soluble) 0.156513