u7 snrnp Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A ribonucleoprotein complex that contains the U7 snRNA and is required for the 3'-end processing of replication-dependent histone pre-mRNAs. (Gene Ontology, GO_0005683)
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46 proteins co-occuring with the u7 snrnp cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
LSM11 LSM11, U7 small nuclear RNA associated 2.61902
LSM10 LSM10, U7 small nuclear RNA associated 2.37147
SLBP stem-loop binding protein 2.12458
SYMPK symplekin 1.63896
ZNF473 zinc finger protein 473 1.36088
WDR33 WD repeat domain 33 1.2809
SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 16kDa 1.21894
CPSF1 cleavage and polyadenylation specific factor 1, 160kDa 1.14955
CSTF2 cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa 1.10817
SNRPD2 small nuclear ribonucleoprotein D2 polypeptide 16.5kDa 1.10562
ERI1 exoribonuclease 1 0.804772
HNRNPUL1 heterogeneous nuclear ribonucleoprotein U-like 1 0.776384
CPSF3 cleavage and polyadenylation specific factor 3, 73kDa 0.747285
CPSF2 cleavage and polyadenylation specific factor 2, 100kDa 0.713238
PRMT5 protein arginine methyltransferase 5 0.702185
XRN2 5'-3' exoribonuclease 2 0.669425
HINFP histone H4 transcription factor 0.666394
COIL coilin 0.653019
TRIM10 tripartite motif containing 10 0.650869
TRIM26 tripartite motif containing 26 0.644858
HIST1H4D histone cluster 1, H4d 0.638005
HIST2H4B histone cluster 2, H4b 0.638005
HIST1H4E histone cluster 1, H4e 0.638005
HIST1H4B histone cluster 1, H4b 0.638005
HIST1H4A histone cluster 1, H4a 0.638005
HIST1H4C histone cluster 1, H4c 0.638005
HIST1H4J histone cluster 1, H4j 0.638005
HIST1H4K histone cluster 1, H4k 0.638005
HIST1H4I histone cluster 1, H4i 0.638005
HIST1H4H histone cluster 1, H4h 0.638005
HIST4H4 histone cluster 4, H4 0.637578
HIST2H4A histone cluster 2, H4a 0.637578
HIST1H4F histone cluster 1, H4f 0.637578
HIST1H4L histone cluster 1, H4l 0.637578
TRIM15 tripartite motif containing 15 0.633305
CPSF6 cleavage and polyadenylation specific factor 6, 68kDa 0.576329
DHX15 DEAH (Asp-Glu-Ala-His) box helicase 15 0.509604
CBS cystathionine-beta-synthase 0.50879
LSM1 LSM1, U6 small nuclear RNA associated 0.437356
NPAT nuclear protein, ataxia-telangiectasia locus 0.392001
H3F3B H3 histone, family 3B (H3.3B) 0.299197
H3F3A H3 histone, family 3A 0.299197
HIST2H3PS2 histone cluster 2, H3, pseudogene 2 0.180339
HIST2H2AC histone cluster 2, H2ac 0.167856
HIST2H2AA4 histone cluster 2, H2aa4 0.167611
HIST2H2AA3 histone cluster 2, H2aa3 0.167611