vaccinia Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
Description A viral infectious disease that results_in infection, located_in skin, has_material_basis_in Vaccinia virus, which is used as a live vaccine against smallpox. The virus is transmitted_by contact with the vaccination site before it has healed, or transmitted_by fomites that have been contaminated with live virus from the vaccination site. The infection has_symptom rash, has_symptom fever, and has_symptom body aches. (Human Disease Ontology, DOID_3298)
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Genes

72 genes co-occuring with the biological term vaccinia in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
ACTA1 actin, alpha 1, skeletal muscle
ACTC1 actin, alpha, cardiac muscle 1
ACTR2 ARP2 actin-related protein 2 homolog (yeast)
ACTR3 ARP3 actin-related protein 3 homolog (yeast)
AKT1 v-akt murine thymoma viral oncogene homolog 1
APOBEC3G apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G
BAK1 BCL2-antagonist/killer 1
BANF1 barrier to autointegration factor 1
BAX BCL2-associated X protein
BCL2 B-cell CLL/lymphoma 2
BCL2L11 BCL2-like 11 (apoptosis facilitator)
CAPRIN1 cell cycle associated protein 1
CASP9 caspase 9, apoptosis-related cysteine peptidase
CD74 CD74 molecule, major histocompatibility complex, class II invariant chain
CLTC clathrin, heavy chain (Hc)
CSF2 colony stimulating factor 2 (granulocyte-macrophage)
CSNK2A1 casein kinase 2, alpha 1 polypeptide
CXCL1 chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha)
CXCL8 chemokine (C-X-C motif) ligand 8
DUSP23 dual specificity phosphatase 23
DUSP3 dual specificity phosphatase 3
EIF2A eukaryotic translation initiation factor 2A, 65kDa
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2
EIF2S1 eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa
EIF4G1 eukaryotic translation initiation factor 4 gamma, 1
ERBB2 erb-b2 receptor tyrosine kinase 2
FAM21C family with sequence similarity 21, member C
FLG filaggrin
FLT3 fms-related tyrosine kinase 3
G3BP1 GTPase activating protein (SH3 domain) binding protein 1
GAPDH glyceraldehyde-3-phosphate dehydrogenase
GLMN glomulin, FKBP associated protein
GOLGA1 golgin A1
GPA33 glycoprotein A33 (transmembrane)
GRB2 growth factor receptor-bound protein 2
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)
HLA-A major histocompatibility complex, class I, A
HLA-B major histocompatibility complex, class I, B
IFNB1 interferon, beta 1, fibroblast
IFNG interferon, gamma
IL10RB interleukin 10 receptor, beta
IL18 interleukin 18
IL1A interleukin 1, alpha
IL25 interleukin 25
IL6 interleukin 6
IRF3 interferon regulatory factor 3
IRF7 interferon regulatory factor 7
ISG15 ISG15 ubiquitin-like modifier
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
KIF5B kinesin family member 5B
LIG1 ligase I, DNA, ATP-dependent
MAPK1 mitogen-activated protein kinase 1
MARCO macrophage receptor with collagenous structure
MCL1 myeloid cell leukemia 1
MYO9A myosin IXA
NCK1 NCK adaptor protein 1
NFKB1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1
PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1
RAB1A RAB1A, member RAS oncogene family
RHOA ras homolog family member A
S100A11 S100 calcium binding protein A11
SMC3 structural maintenance of chromosomes 3
STAT1 signal transducer and activator of transcription 1, 91kDa
SUMO1 small ubiquitin-like modifier 1
TAP1 transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)
TBP TATA box binding protein
TNF tumor necrosis factor
TRAF2 TNF receptor-associated factor 2
VEGFA vascular endothelial growth factor A
VRK1 vaccinia related kinase 1
YY1 YY1 transcription factor
ZAP70 zeta-chain (TCR) associated protein kinase 70kDa