vacuolar lumen Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description The volume enclosed within the vacuolar membrane. (Gene Ontology, GO_0005775)
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Genes

68 proteins co-occuring with the vacuolar lumen cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
PPA1 pyrophosphatase (inorganic) 1 1.21686
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 1.07005
NEDD4 neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase 0.891631
SLC41A1 solute carrier family 41 (magnesium transporter), member 1 0.880094
PIKFYVE phosphoinositide kinase, FYVE finger containing 0.837351
INTS1 integrator complex subunit 1 0.826336
VPS28 vacuolar protein sorting 28 homolog (S. cerevisiae) 0.819452
TSG101 tumor susceptibility 101 0.807065
NDFIP1 Nedd4 family interacting protein 1 0.748641
AKAP5 A kinase (PRKA) anchor protein 5 0.696905
NEU4 sialidase 4 0.696026
VPS8 vacuolar protein sorting 8 homolog (S. cerevisiae) 0.669858
SNX4 sorting nexin 4 0.635868
RNASE1 ribonuclease, RNase A family, 1 (pancreatic) 0.615861
CTSS cathepsin S 0.604862
TPCN2 two pore segment channel 2 0.567585
GGA2 golgi-associated, gamma adaptin ear containing, ARF binding protein 2 0.524294
ATP12A ATPase, H+/K+ transporting, nongastric, alpha polypeptide 0.521841
HGS hepatocyte growth factor-regulated tyrosine kinase substrate 0.520615
ATP4A ATPase, H+/K+ exchanging, alpha polypeptide 0.520615
NPC2 Niemann-Pick disease, type C2 0.50879
ATP13A2 ATPase type 13A2 0.505537
KPNA1 karyopherin alpha 1 (importin alpha 5) 0.487307
WNT10A wingless-type MMTV integration site family, member 10A 0.481258
RER1 retention in endoplasmic reticulum sorting receptor 1 0.481258
HSPA8 heat shock 70kDa protein 8 0.478843
CHMP3 charged multivesicular body protein 3 0.468401
CHMP6 charged multivesicular body protein 6 0.464798
CTSA cathepsin A 0.462398
PPOX protoporphyrinogen oxidase 0.448848
NEU2 sialidase 2 (cytosolic sialidase) 0.427891
USE1 unconventional SNARE in the ER 1 homolog (S. cerevisiae) 0.406361
SYCN syncollin 0.397035
NEU3 sialidase 3 (membrane sialidase) 0.39626
CHMP2A charged multivesicular body protein 2A 0.372749
NPC1 Niemann-Pick disease, type C1 0.371982
CHMP4B charged multivesicular body protein 4B 0.35899
TPP1 tripeptidyl peptidase I 0.354042
SORD sorbitol dehydrogenase 0.353282
PARK2 parkin RBR E3 ubiquitin protein ligase 0.344556
YKT6 YKT6 v-SNARE homolog (S. cerevisiae) 0.339639
EEA1 early endosome antigen 1 0.326453
FBN2 fibrillin 2 0.325702
CHMP4A charged multivesicular body protein 4A 0.323825
OSBP oxysterol binding protein 0.322325
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.32195
UGCG UDP-glucose ceramide glucosyltransferase 0.292897
MCOLN1 mucolipin 1 0.291047
NAPA N-ethylmaleimide-sensitive factor attachment protein, alpha 0.281453
DNAH8 dynein, axonemal, heavy chain 8 0.280716
FCGRT Fc fragment of IgG, receptor, transporter, alpha 0.277774
MGAM maltase-glucoamylase 0.262025
CYTH1 cytohesin 1 0.254017
NCSTN nicastrin 0.230958
ATP11A ATPase, class VI, type 11A 0.22173
RHEB Ras homolog enriched in brain 0.21228
MTOR mechanistic target of rapamycin (serine/threonine kinase) 0.199659
PIK3C3 phosphatidylinositol 3-kinase, catalytic subunit type 3 0.19733
LAMP1 lysosomal-associated membrane protein 1 0.189539
SEC61A1 Sec61 alpha 1 subunit (S. cerevisiae) 0.174361
IDH1 isocitrate dehydrogenase 1 (NADP+), soluble 0.167366
NOTCH1 notch 1 0.132627
SMPD1 sphingomyelin phosphodiesterase 1, acid lysosomal 0.132111
LRP2 low density lipoprotein receptor-related protein 2 0.131584
CDSN corneodesmosin 0.130538
LAMP2 lysosomal-associated membrane protein 2 0.128322
M6PR mannose-6-phosphate receptor (cation dependent) 0.128256
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 0.128102