venetoclax_SNU-423 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description venetoclax perturbation in SNU-423 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the venetoclax_SNU-423 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
VIM vimentin 0.180703
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.140848
HDAC9 histone deacetylase 9 0.138425
LDHA lactate dehydrogenase A 0.108993
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.102108
BNIP3 BCL2/adenovirus E1B 19kDa interacting protein 3 0.0957461
IFIT3 interferon-induced protein with tetratricopeptide repeats 3 0.0906151
IQCJ-SCHIP1 IQCJ-SCHIP1 readthrough 0.0892104
ENO1 enolase 1, (alpha) 0.0819415
AKAP12 A kinase (PRKA) anchor protein 12 0.0814024
DST dystonin 0.072745
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 0.0725799
SQSTM1 sequestosome 1 0.0708755
HMGA2 high mobility group AT-hook 2 0.070692
ASPH aspartate beta-hydroxylase 0.0703994
VCAN versican 0.0668877
B2M beta-2-microglobulin 0.0643124
IFIT2 interferon-induced protein with tetratricopeptide repeats 2 0.0598313
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.058251
HLA-B major histocompatibility complex, class I, B 0.0571314
GLIS3 GLIS family zinc finger 3 0.0570773
HLA-E major histocompatibility complex, class I, E 0.0558496
RPS12 ribosomal protein S12 0.0549444
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0546045
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0542124
CANX calnexin 0.052688
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0526048
PLIN2 perilipin 2 0.0524019
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 0.0517484
RPL23 ribosomal protein L23 0.0517067
GOLGB1 golgin B1 0.0512664
RND3 Rho family GTPase 3 0.0510874
MT2A metallothionein 2A 0.0510541
HLA-A major histocompatibility complex, class I, A 0.050545
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0484522
TRIO trio Rho guanine nucleotide exchange factor 0.0482959
CDH13 cadherin 13 0.0480989
PARP14 poly (ADP-ribose) polymerase family, member 14 0.046802
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0463858
EXT1 exostosin glycosyltransferase 1 0.0440562
MACF1 microtubule-actin crosslinking factor 1 0.043859
TPT1 tumor protein, translationally-controlled 1 0.042298
ZSWIM6 zinc finger, SWIM-type containing 6 0.0420314
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.0415088
ZBTB38 zinc finger and BTB domain containing 38 0.0410494
NAP1L1 nucleosome assembly protein 1-like 1 0.041016
FNIP1 folliculin interacting protein 1 0.0405988
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 0.0399612
CD44 CD44 molecule (Indian blood group) 0.038814
IFITM3 interferon induced transmembrane protein 3 0.037657
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.037526
INTS6 integrator complex subunit 6 0.0371521
LAMC1 laminin, gamma 1 (formerly LAMB2) 0.037147
VCL vinculin 0.036813
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0358979
SP100 SP100 nuclear antigen 0.0358182
ATXN1 ataxin 1 0.0352701
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0352064
FTL ferritin, light polypeptide 0.0350961
APLP2 amyloid beta (A4) precursor-like protein 2 0.034889
GPC6 glypican 6 0.0338712
RPS8 ribosomal protein S8 0.0333726
ANKRD1 ankyrin repeat domain 1 (cardiac muscle) 0.033142
CALR calreticulin 0.0324234
RPS6 ribosomal protein S6 0.0323308
IFI16 interferon, gamma-inducible protein 16 0.0322991
PHF3 PHD finger protein 3 0.0322825
IFI6 interferon, alpha-inducible protein 6 0.031457
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0310464
COL6A3 collagen, type VI, alpha 3 0.0304794
FRMPD4 FERM and PDZ domain containing 4 0.0304511
RPL37A ribosomal protein L37a 0.0304455
VMP1 vacuole membrane protein 1 0.0301921
BICC1 BicC family RNA binding protein 1 0.0298439
EFNA5 ephrin-A5 0.0296328
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 0.029538
SAMD9 sterile alpha motif domain containing 9 0.0292368
PGK1 phosphoglycerate kinase 1 0.0291651
KYNU kynureninase 0.0289525
FBXL7 F-box and leucine-rich repeat protein 7 0.0286952
ETS1 v-ets avian erythroblastosis virus E26 oncogene homolog 1 0.0283186
OSBPL8 oxysterol binding protein-like 8 0.0281168
STC1 stanniocalcin 1 0.0280965
C6ORF62 chromosome 6 open reading frame 62 0.0279817
RHOBTB3 Rho-related BTB domain containing 3 0.0279146
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.0278908
TNFAIP3 tumor necrosis factor, alpha-induced protein 3 0.0275153
EIF3A eukaryotic translation initiation factor 3, subunit A 0.0268582
SVIL supervillin 0.0268339
MYH9 myosin, heavy chain 9, non-muscle 0.0268177
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 0.0267652
RIGI RNA sensor RIG-I 0.0267645
WWOX WW domain containing oxidoreductase 0.0267369
JMJD1C jumonji domain containing 1C 0.0265691
RAD51B RAD51 paralog B 0.0264469
SMYD3 SET and MYND domain containing 3 0.0259279
RFX3 regulatory factor X, 3 (influences HLA class II expression) 0.0255511
BPTF bromodomain PHD finger transcription factor 0.0246007
GRIN2A glutamate receptor, ionotropic, N-methyl D-aspartate 2A 0.0245196
FRMD4A FERM domain containing 4A 0.0240894

decreased expression

Symbol Name Standardized Value
FN1 fibronectin 1 -0.159965
NAMPT nicotinamide phosphoribosyltransferase -0.115785
SPARC secreted protein, acidic, cysteine-rich (osteonectin) -0.101108
UGCG UDP-glucose ceramide glucosyltransferase -0.0758177
FTH1 ferritin, heavy polypeptide 1 -0.060629
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) -0.0438757
ELL2 elongation factor, RNA polymerase II, 2 -0.0402226
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0391793
RTN4 reticulon 4 -0.0387044
NDRG1 N-myc downstream regulated 1 -0.0365163
TSC22D2 TSC22 domain family, member 2 -0.0340576
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa -0.0327944
FLNA filamin A, alpha -0.030987
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.030615
TAPBP TAP binding protein (tapasin) -0.0275666
ACTG1 actin gamma 1 -0.0268376
ARF4 ADP-ribosylation factor 4 -0.0267285
CCNL1 cyclin L1 -0.0261549
EGR1 early growth response 1 -0.025229
ICAM1 intercellular adhesion molecule 1 -0.0242022
POTEF POTE ankyrin domain family, member F -0.0241004
PHLDB2 pleckstrin homology-like domain, family B, member 2 -0.0230103
HMGA1 high mobility group AT-hook 1 -0.0230001
NT5C2 5'-nucleotidase, cytosolic II -0.0224404
RBM39 RNA binding motif protein 39 -0.0218995
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0217662
VEGFA vascular endothelial growth factor A -0.0201173
ATP13A3 ATPase type 13A3 -0.0199737
MAP3K2 mitogen-activated protein kinase kinase kinase 2 -0.0199036
SBF2 SET binding factor 2 -0.0197973
FHIP1A FHF complex subunit HOOK interacting protein 1A -0.0196688
MARCHF6 membrane associated ring-CH-type finger 6 -0.0195417
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.019431
PNISR PNN-interacting serine/arginine-rich protein -0.0193669
GNAS GNAS complex locus -0.0192789
TMEM41B transmembrane protein 41B -0.0186689
PIK3C2A phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha -0.0183932
TUBB tubulin, beta class I -0.0182453
RBPJ recombination signal binding protein for immunoglobulin kappa J region -0.0178739
TMEM123 transmembrane protein 123 -0.0176924
MIS18BP1 MIS18 binding protein 1 -0.0176559
RAB6A RAB6A, member RAS oncogene family -0.0174956
THBS1 thrombospondin 1 -0.0170795
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0170037
USP3 ubiquitin specific peptidase 3 -0.0166569
NFKBIZ nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta -0.0165566
WTAP Wilms tumor 1 associated protein -0.0165159
NPEPPS aminopeptidase puromycin sensitive -0.0164616
C3 complement component 3 -0.0162752
ZNF292 zinc finger protein 292 -0.0162111
OGA O-GlcNAcase -0.0161764
MED14 mediator complex subunit 14 -0.0160477
FOSL1 FOS-like antigen 1 -0.0159129
UBA6 ubiquitin-like modifier activating enzyme 6 -0.0157472
PTBP3 polypyrimidine tract binding protein 3 -0.0156029
COL1A1 collagen, type I, alpha 1 -0.015387
FLNB filamin B, beta -0.0150933
DENND5A DENN/MADD domain containing 5A -0.0149232
PDPK1 3-phosphoinositide dependent protein kinase 1 -0.0148431
LCORL ligand dependent nuclear receptor corepressor-like -0.014774
SCARB1 scavenger receptor class B, member 1 -0.0146971
RUNX2 runt-related transcription factor 2 -0.0146541
HELZ helicase with zinc finger -0.0145143
WASF2 WAS protein family, member 2 -0.0145075
ANLN anillin, actin binding protein -0.0144954
KHDRBS1 KH domain containing, RNA binding, signal transduction associated 1 -0.0141786
SLC22A4 solute carrier family 22 (organic cation/zwitterion transporter), member 4 -0.0140714
WSB1 WD repeat and SOCS box containing 1 -0.0140708
DUSP5 dual specificity phosphatase 5 -0.0138093
PTPN12 protein tyrosine phosphatase, non-receptor type 12 -0.0137442
SNX9 sorting nexin 9 -0.0136239
FAM3C family with sequence similarity 3, member C -0.013259
SETD5 SET domain containing 5 -0.0130866
TENT4A terminal nucleotidyltransferase 4A -0.0128351
TFG TRK-fused gene -0.0127501
BAZ2A bromodomain adjacent to zinc finger domain, 2A -0.0127047
FUS FUS RNA binding protein -0.0124999
TXNRD1 thioredoxin reductase 1 -0.0123912
CDC27 cell division cycle 27 -0.0123009
KLF7 Kruppel-like factor 7 (ubiquitous) -0.0122369
FNDC3B fibronectin type III domain containing 3B -0.0122073
ZMIZ1 zinc finger, MIZ-type containing 1 -0.0121418
TBC1D12 TBC1 domain family, member 12 -0.0121001
ADAM17 ADAM metallopeptidase domain 17 -0.0118731
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0116042
ARPC2 actin related protein 2/3 complex, subunit 2, 34kDa -0.0115769
WDR45B WD repeat domain 45B -0.0115762
RPRD1B regulation of nuclear pre-mRNA domain containing 1B -0.0115033
RNF145 ring finger protein 145 -0.0114384
ZFAND6 zinc finger, AN1-type domain 6 -0.0114381
MED23 mediator complex subunit 23 -0.0114225
KDM5B lysine (K)-specific demethylase 5B -0.0111437
RASA2 RAS p21 protein activator 2 -0.0111266
AGRN agrin -0.0111241
HBP1 HMG-box transcription factor 1 -0.0111164
MAP4 microtubule-associated protein 4 -0.0111158
SAR1A secretion associated, Ras related GTPase 1A -0.0110854
PDK3 pyruvate dehydrogenase kinase, isozyme 3 -0.0109417
GORASP2 golgi reassembly stacking protein 2, 55kDa -0.0109237
MEF2D myocyte enhancer factor 2D -0.0108585