vincristine_NCI-H2030 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description vincristine perturbation in NCI-H2030 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the vincristine_NCI-H2030 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
AKAP12 A kinase (PRKA) anchor protein 12 0.128816
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.108065
RPS4Y1 ribosomal protein S4, Y-linked 1 0.0754381
TM4SF1 transmembrane 4 L six family member 1 0.0741519
RPL3 ribosomal protein L3 0.072343
ERRFI1 ERBB receptor feedback inhibitor 1 0.0654781
CXCL8 chemokine (C-X-C motif) ligand 8 0.0640087
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0619381
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0582006
MT2A metallothionein 2A 0.0546553
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 0.0459002
PPP3CA protein phosphatase 3, catalytic subunit, alpha isozyme 0.0442713
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.043673
MYH9 myosin, heavy chain 9, non-muscle 0.040631
SAMD4A sterile alpha motif domain containing 4A 0.0398068
TPM3 tropomyosin 3 0.0394111
EEF2 eukaryotic translation elongation factor 2 0.0376023
MCL1 myeloid cell leukemia 1 0.0354035
FLNA filamin A, alpha 0.0347758
TFPI2 tissue factor pathway inhibitor 2 0.0342635
TRIO trio Rho guanine nucleotide exchange factor 0.0330607
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0325041
APP amyloid beta (A4) precursor protein 0.0313889
HSPA8 heat shock 70kDa protein 8 0.0304189
ACTN1 actinin, alpha 1 0.0302139
RPL18A ribosomal protein L18a 0.0290165
PCBP2 poly(rC) binding protein 2 0.0289249
DDAH1 dimethylarginine dimethylaminohydrolase 1 0.0279411
LDHA lactate dehydrogenase A 0.0275431
UAP1 UDP-N-acetylglucosamine pyrophosphorylase 1 0.0271331
INHBA inhibin, beta A 0.0264183
CANX calnexin 0.0260137
SLC39A14 solute carrier family 39 (zinc transporter), member 14 0.0256897
FLNB filamin B, beta 0.0253818
FGB fibrinogen beta chain 0.0253543
ZFAND3 zinc finger, AN1-type domain 3 0.0253476
MSN moesin 0.0241261
APLP2 amyloid beta (A4) precursor-like protein 2 0.0240409
WDR43 WD repeat domain 43 0.0236198
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0231847
BRD2 bromodomain containing 2 0.0230173
COTL1 coactosin-like F-actin binding protein 1 0.0226084
RICTOR RPTOR independent companion of MTOR, complex 2 0.0222131
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.021466
HDGF hepatoma-derived growth factor 0.0209755
YBX3 Y box binding protein 3 0.0209639
RPL18 ribosomal protein L18 0.020764
CFLAR CASP8 and FADD-like apoptosis regulator 0.0206873
MACF1 microtubule-actin crosslinking factor 1 0.0206285
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0206201
PTK2 protein tyrosine kinase 2 0.0204838
RPS4X ribosomal protein S4, X-linked 0.020252
GLS2 glutaminase 2 (liver, mitochondrial) 0.0196223
EIF4A1 eukaryotic translation initiation factor 4A1 0.0191961
FXR1 fragile X mental retardation, autosomal homolog 1 0.019007
EIF3A eukaryotic translation initiation factor 3, subunit A 0.0186501
SRRM2 serine/arginine repetitive matrix 2 0.0184593
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like 0.0180922
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.0180103
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0177942
TPD52 tumor protein D52 0.0177841
AP2B1 adaptor-related protein complex 2, beta 1 subunit 0.0174127
ASAP2 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 0.0172366
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.0171672
SFPQ splicing factor proline/glutamine-rich 0.0171584
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0171131
KRT18 keratin 18, type I 0.0171092
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0170235
YTHDC1 YTH domain containing 1 0.0168671
GARS1 glycyl-tRNA synthetase 1 0.0168073
KLF6 Kruppel-like factor 6 0.0163481
ARHGAP29 Rho GTPase activating protein 29 0.0163433
HNRNPH3 heterogeneous nuclear ribonucleoprotein H3 (2H9) 0.016251
USP3 ubiquitin specific peptidase 3 0.0162182
RTN4 reticulon 4 0.0161335
HDLBP high density lipoprotein binding protein 0.0159873
EPG5 ectopic P-granules autophagy protein 5 homolog (C. elegans) 0.0159399
RBM39 RNA binding motif protein 39 0.0158993
YBX1 Y box binding protein 1 0.015749
NPTN neuroplastin 0.015715
TSC22D2 TSC22 domain family, member 2 0.0156046
PPP2R2A protein phosphatase 2, regulatory subunit B, alpha 0.0151793
ERBIN erbb2 interacting protein 0.0150426
RBM25 RNA binding motif protein 25 0.0150339
MAP1B microtubule-associated protein 1B 0.0150313
CHD4 chromodomain helicase DNA binding protein 4 0.0148834
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0148499
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 0.0147548
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 0.0147175
HYCC2 hyccin PI4KA lipid kinase complex subunit 2 0.0146851
CTBP2 C-terminal binding protein 2 0.0144842
SON SON DNA binding protein 0.0144698
PRRC2C proline-rich coiled-coil 2C 0.0143837
PSMD14 proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 0.014223
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa 0.0140746
EEF1G eukaryotic translation elongation factor 1 gamma 0.0138645
CNOT1 CCR4-NOT transcription complex, subunit 1 0.0138385
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0137399
NEK7 NIMA-related kinase 7 0.0137062
FOXO3 forkhead box O3 0.0136603

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.26563
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) -0.157959
PDE4D phosphodiesterase 4D, cAMP-specific -0.133757
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.114091
VIM vimentin -0.11259
IGF2 insulin-like growth factor 2 -0.0823483
THSD4 thrombospondin, type I, domain containing 4 -0.078055
PM20D1 peptidase M20 domain containing 1 -0.0737438
PYGL phosphorylase, glycogen, liver -0.0695166
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0565343
RAD51B RAD51 paralog B -0.0522927
GRAMD1B GRAM domain containing 1B -0.0517832
DOCK4 dedicator of cytokinesis 4 -0.048002
IGFBP3 insulin-like growth factor binding protein 3 -0.0445732
S100A6 S100 calcium binding protein A6 -0.0428215
OSMR oncostatin M receptor -0.0413864
IER3 immediate early response 3 -0.0408866
C15ORF48 chromosome 15 open reading frame 48 -0.0408232
RPL35A ribosomal protein L35a -0.0396477
RPL31 ribosomal protein L31 -0.0392184
TMSB10 thymosin beta 10 -0.038424
PTMA prothymosin, alpha -0.0374834
CYP1B1 cytochrome P450, family 1, subfamily B, polypeptide 1 -0.0366046
NQO1 NAD(P)H dehydrogenase, quinone 1 -0.035456
EFNA5 ephrin-A5 -0.0353215
TBC1D8 TBC1 domain family, member 8 (with GRAM domain) -0.0350377
EHBP1 EH domain binding protein 1 -0.0343266
TPT1 tumor protein, translationally-controlled 1 -0.0343201
IGFBP4 insulin-like growth factor binding protein 4 -0.0339357
RPS25 ribosomal protein S25 -0.033489
RPS29 ribosomal protein S29 -0.0329719
BICC1 BicC family RNA binding protein 1 -0.0318143
RPS27A ribosomal protein S27a -0.0316692
SVIL supervillin -0.031601
NHSL1 NHS-like 1 -0.0314226
KYNU kynureninase -0.0310387
EDIL3 EGF-like repeats and discoidin I-like domains 3 -0.0309594
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0305007
FTL ferritin, light polypeptide -0.0302182
NEBL nebulette -0.0300722
TUBB tubulin, beta class I -0.0300004
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0299883
RERE arginine-glutamic acid dipeptide (RE) repeats -0.0295859
TTC28 tetratricopeptide repeat domain 28 -0.0295258
ZBTB20 zinc finger and BTB domain containing 20 -0.0286148
BABAM2 BRISC and BRCA1 A complex member 2 -0.0282298
GLIS3 GLIS family zinc finger 3 -0.0279282
UBASH3B ubiquitin associated and SH3 domain containing B -0.0277971
ZMYND8 zinc finger, MYND-type containing 8 -0.0277482
PKM pyruvate kinase, muscle -0.0274657
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 -0.0273813
CMIP c-Maf inducing protein -0.0271654
UTRN utrophin -0.0271474
VCL vinculin -0.0271419
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 -0.0269212
MAML3 mastermind-like 3 (Drosophila) -0.0268185
ARHGAP26 Rho GTPase activating protein 26 -0.0264421
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0262145
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0258284
SHANK2 SH3 and multiple ankyrin repeat domains 2 -0.0247511
TUBA1B tubulin, alpha 1b -0.0242226
FNDC3B fibronectin type III domain containing 3B -0.0235479
ASPH aspartate beta-hydroxylase -0.0234399
EGR1 early growth response 1 -0.0233216
MAP3K5 mitogen-activated protein kinase kinase kinase 5 -0.0229979
ENO1 enolase 1, (alpha) -0.0229848
LOC102724023 ES1 protein homolog, mitochondrial -0.0228034
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.0227858
DHRSX dehydrogenase/reductase (SDR family) X-linked -0.0227454
NNMT nicotinamide N-methyltransferase -0.0223547
SYNE2 spectrin repeat containing, nuclear envelope 2 -0.0222717
SNX14 sorting nexin 14 -0.0219597
CUX1 cut-like homeobox 1 -0.0211329
TPM4 tropomyosin 4 -0.0210061
VMP1 vacuole membrane protein 1 -0.0207148
RPL37A ribosomal protein L37a -0.020356
ANGPTL4 angiopoietin-like 4 -0.0198516
AHR aryl hydrocarbon receptor -0.019835
USP34 ubiquitin specific peptidase 34 -0.0198043
RPS3 ribosomal protein S3 -0.0197178
WWTR1 WW domain containing transcription regulator 1 -0.019715
RPS24 ribosomal protein S24 -0.0197107
KPNB1 karyopherin (importin) beta 1 -0.0193496
COX4I1 cytochrome c oxidase subunit IV isoform 1 -0.0191971
ATXN1 ataxin 1 -0.0191889
HLA-B major histocompatibility complex, class I, B -0.0187619
LAMB1 laminin, beta 1 -0.0187437
PTP4A1 protein tyrosine phosphatase type IVA, member 1 -0.0187248
ITFG1 integrin alpha FG-GAP repeat containing 1 -0.0186712
VDAC1 voltage-dependent anion channel 1 -0.0180589
SLC25A37 solute carrier family 25 (mitochondrial iron transporter), member 37 -0.0178374
RPS12 ribosomal protein S12 -0.0175247
TAS2R14 taste receptor, type 2, member 14 -0.0173586
HMGA2 high mobility group AT-hook 2 -0.0172434
BHLHE40 basic helix-loop-helix family, member e40 -0.0170617
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.0169941
NF1 neurofibromin 1 -0.0169406
SOX4 SRY (sex determining region Y)-box 4 -0.0168788
BMPR2 bone morphogenetic protein receptor, type II (serine/threonine kinase) -0.0167933
TNRC6B trinucleotide repeat containing 6B -0.0166451