Description | COMPARTMENTS is a database of protein subcellular localization evidence, using evidence collected by integrating experimental datasets, by integrating sequence-based predictions, by manual literature curation, or by automated textmining. Subcellular structure/compartment terms were mapped to the Cellular Component subset of the Gene Ontology. Data from disparate sources were standardized by assigning confidence scores for all protein-compartment associations. |
Citation(s) | |
External Link | https://compartments.jensenlab.org/Search |
Dataset | Description | Category | Attribute | Views |
---|---|---|---|---|
Curated Protein Localization Evidence Scores | Protein subcellular localization evidence scores by manual literature curation | structural or functional annotations | cellular component | 7501 |
Experimental Protein Localization Evidence Scores | Protein subcellular localization evidence scores by integrating experimental data | proteomics | cellular component | 4379 |
Text-mining Protein Localization Evidence Scores | Gene-cellular compartment co-occurrence scores from text-mining biomedical abstracts | structural or functional annotations | cellular component | 9103 |