| Description | COMPARTMENTS is a database of protein subcellular localization evidence, using evidence collected by integrating experimental datasets, by integrating sequence-based predictions, by manual literature curation, or by automated textmining. Subcellular structure/compartment terms were mapped to the Cellular Component subset of the Gene Ontology. Data from disparate sources were standardized by assigning confidence scores for all protein-compartment associations. |
| Citation(s) | |
| External Link | https://compartments.jensenlab.org/Search |
| Dataset | Description | Category | Attribute | Views |
|---|---|---|---|---|
| Curated Protein Localization Evidence Scores | Protein subcellular localization evidence scores by manual literature curation | structural or functional annotations | cellular component | 8561 |
| Experimental Protein Localization Evidence Scores | Protein subcellular localization evidence scores by integrating experimental data | proteomics | cellular component | 5154 |
| Text-mining Protein Localization Evidence Scores | Gene-cellular compartment co-occurrence scores from text-mining biomedical abstracts | structural or functional annotations | cellular component | 10527 |
| Curated Protein Localization Evidence Scores 2025 | Protein subcellular localization evidence scores by manual literature curation | structural or functional annotations | cellular component | 1177 |
| Experimental Protein Localization Evidence Scores 2025 | Protein subcellular localization evidence scores by integrating experimental data | proteomics | cellular component | 701 |
| Text-mining Protein Localization Evidence Scores 2025 | Gene-cellular compartment co-occurrence scores from text-mining biomedical abstracts | structural or functional annotations | cellular component | 10280 |
