This section contains all files created for the ARCHS4 ZOO collection. Currently, we support a selected set of species other than mouse and human. The methods are described in . For help in accessing the files, please refer to the Help section or contact us directly. The database will be updated on a regular basis while old versions of the files will be accessible.

If you would like to receive updates about ARCHS4 data and stay informed about new data releases consider signing up for our newsletter.
Drosophila melanogaster | Bos taurus | Caenorhabditis elegans | Danio rerio | Gallus gallus | Rattus norvegicus | Saccharomyces cerevisiae | Arabidopsis thaliana

Drosophila melanogaster

Last updated: 8/2018 | Samples: 9924 | Series: 368

Gene counts Size: 206MB Kallisto index Size: 674MB
Transcript counts Size: 375MB Gene mapping Size: < 1MB
Transcript TPM Size: 1.2GB Alignment quality Size: < 1MB

Bos taurus

Last updated: 8/2018 | Samples: 2039 | Series: 69

Gene counts Size: 60MB Kallisto index Size: 819MB
Transcript counts Size: 64MB Gene mapping Size: < 1MB
Transcript TPM Size: 192MB Alignment quality Size: < 1MB

Caenorhabditis elegans

Last updated: 8/2018 | Samples: 2935 | Series: 182

Gene counts Size: 84MB Kallisto index Size: 596MB
Transcript counts Size: 122MB Gene mapping Size: < 1MB
Transcript TPM Size: 400MB Alignment quality Size: < 1MB

Danio rerio

Last updated: 8/2018 | Samples: 4004 | Series: 223

Gene counts Size: 126MB Kallisto index Size: 1.4GB
Transcript counts Size: 192MB Gene mapping Size: < 1MB
Transcript TPM Size: 657MB Alignment quality Size: < 1MB

Gallus gallus

Last updated: 8/2018 | Samples: 1649 | Series: 82

Gene counts Size: 41MB Kallisto index Size: 754MB
Transcript counts Size: 62MB Gene mapping Size: < 1MB
Transcript TPM Size: 186MB Alignment quality Size: < 1MB

Rattus norvegicus

Last updated: 8/2018 | Samples: 3373 | Series: 184

Gene counts Size: 110MB Kallisto index Size: 1.0GB
Transcript counts Size: 140MB Gene mapping Size: < 1MB
Transcript TPM Size: 431MB Alignment quality Size: < 1MB

Saccharomyces cerevisiae

Last updated: 8/2018 | Samples: 3268 | Series: 214

Gene counts Size: 37MB Kallisto index Size: 167MB
Transcript counts Size: 37MB Gene mapping Size: < 1MB
Transcript TPM Size: 97MB Alignment quality Size: < 1MB

Arabidopsis thaliana

Last updated: 8/2018 | Samples: 7875 | Series: 442

Gene counts Size: 332MB Kallisto index Size: 929MB
Transcript counts Size: 507MB Gene mapping Size: < 1MB
Transcript TPM Size: 1.6GB Alignment quality Size: < 1MB



© Ma'ayan Lab.