COL6A3

Predicted funtional terms: GO | ChEA | Mouse Phenotype | Human Phenotype | KEA | KEGG
Most similar genes based on co-expression: Pearson correlation
Expression levels across tissues and cell lines: Tissue Expression | Cell Line Expression





Description: This gene encodes the alpha-3 chain, one of the three alpha chains of type VI collagen, a beaded filament collagen found in most connective tissues. The alpha-3 chain of type VI collagen is much larger than the alpha-1 and -2 chains. This difference in size is largely due to an increase in the number of subdomains, similar to von Willebrand Factor type A domains, that are found in the amino terminal globular domain of all the alpha chains. These domains have been shown to bind extracellular matrix proteins, an interaction that explains the importance of this collagen in organizing matrix components. Mutations in the type VI collagen genes are associated with Bethlem myopathy, a rare autosomal dominant proximal myopathy with early childhood onset. Mutations in this gene are also a cause of Ullrich congenital muscular dystrophy, also referred to as Ullrich scleroatonic muscular dystrophy, an autosomal recessive congenital myopathy that is more severe than Bethlem myopathy. Multiple transcript variants have been identified, but the full-length nature of only some of these variants has been described. NCBI Entrez Gene | GeneCards | Harmonizome

Functional Annotation Prediction

Predicted biological processes (GO)

RankGene SetZ-score
1protein heterotrimerization (GO:0070208)9.74807498
2collagen fibril organization (GO:0030199)8.02679522
3bone trabecula formation (GO:0060346)6.82323954
4* collagen metabolic process (GO:0032963)5.93832153
5* collagen catabolic process (GO:0030574)5.91407769
6* multicellular organismal macromolecule metabolic process (GO:0044259)5.61779043
7endodermal cell differentiation (GO:0035987)5.50211382
8sequestering of extracellular ligand from receptor (GO:0035581)5.49077260
9* multicellular organismal catabolic process (GO:0044243)5.44081746
10chondrocyte proliferation (GO:0035988)5.42667000
11skin morphogenesis (GO:0043589)5.39427918
12extracellular fibril organization (GO:0043206)5.37000060
13* multicellular organismal metabolic process (GO:0044236)5.32815581
14cartilage development involved in endochondral bone morphogenesis (GO:0060351)5.27801809
15regulation of cellular response to vascular endothelial growth factor stimulus (GO:1902547)4.89393322
16* extracellular matrix disassembly (GO:0022617)4.81952490
17fibril organization (GO:0097435)4.72206424
18axon extension involved in axon guidance (GO:0048846)4.47014726
19neuron projection extension involved in neuron projection guidance (GO:1902284)4.47014726
20chondrocyte development (GO:0002063)4.18995539
21mesenchymal-epithelial cell signaling (GO:0060638)4.15857548
22type B pancreatic cell proliferation (GO:0044342)4.15115061
23keratan sulfate catabolic process (GO:0042340)4.14515484
24adhesion of symbiont to host cell (GO:0044650)4.09310615
25virion attachment to host cell (GO:0019062)4.09310615
26negative regulation of chondrocyte differentiation (GO:0032331)4.06091125
27basement membrane organization (GO:0071711)3.95070301
28dermatan sulfate biosynthetic process (GO:0030208)3.88642120
29negative regulation of smooth muscle cell migration (GO:0014912)3.85067411
30extracellular matrix assembly (GO:0085029)3.85013992
31tooth mineralization (GO:0034505)3.84832488
32craniofacial suture morphogenesis (GO:0097094)3.79974338
33substrate-dependent cell migration (GO:0006929)3.74314843
34outer ear morphogenesis (GO:0042473)3.71812024
35negative regulation of fatty acid transport (GO:2000192)3.69854111
36negative regulation of cartilage development (GO:0061037)3.62552446
37insulin-like growth factor receptor signaling pathway (GO:0048009)3.61954715
38cellular response to vitamin D (GO:0071305)3.60601671
39endocardial cushion development (GO:0003197)3.54985199
40glial cell migration (GO:0008347)3.54912623
41cell migration involved in sprouting angiogenesis (GO:0002042)3.50401463
42adhesion of symbiont to host (GO:0044406)3.50199403
43dermatan sulfate metabolic process (GO:0030205)3.49711005
44positive regulation of blood vessel endothelial cell migration (GO:0043536)3.45146412
45positive regulation of endothelial cell apoptotic process (GO:2000353)3.43825240
46cellular response to amino acid stimulus (GO:0071230)3.42353296
47* extracellular matrix organization (GO:0030198)3.39349116
48planar cell polarity pathway involved in neural tube closure (GO:0090179)3.39159288
49retina vasculature morphogenesis in camera-type eye (GO:0061299)3.37968581
50* extracellular structure organization (GO:0043062)3.37967155
51apoptotic cell clearance (GO:0043277)3.37267855
52protein trimerization (GO:0070206)3.36012582
53wound healing, spreading of epidermal cells (GO:0035313)3.35337751
54negative regulation of axon extension involved in axon guidance (GO:0048843)3.33677517
55positive regulation of extracellular matrix organization (GO:1903055)3.33436656
56positive regulation of cyclin-dependent protein serine/threonine kinase activity involved in G1/S tr3.30305190
57anatomical structure regression (GO:0060033)3.29014696
58plasma membrane repair (GO:0001778)3.27390762
59regulation of cyclin-dependent protein serine/threonine kinase activity involved in G1/S transition 3.25334407
60heparan sulfate proteoglycan biosynthetic process (GO:0015012)3.25331203
61vascular endothelial growth factor signaling pathway (GO:0038084)3.23333303
62cell adhesion mediated by integrin (GO:0033627)3.23218798
63peptidyl-proline hydroxylation (GO:0019511)3.23051036
64regulation of establishment of planar polarity involved in neural tube closure (GO:0090178)3.22111217
65cell proliferation involved in metanephros development (GO:0072203)3.21442646
66positive regulation of mesenchymal cell proliferation (GO:0002053)3.20997306
67embryonic cranial skeleton morphogenesis (GO:0048701)3.19441803
68positive regulation of fatty acid beta-oxidation (GO:0032000)3.18094110
69cellular response to vitamin (GO:0071295)3.15745697
70metanephric mesenchyme development (GO:0072075)3.10981941
71hypotonic response (GO:0006971)3.10765868
72extracellular negative regulation of signal transduction (GO:1900116)3.10526070
73extracellular regulation of signal transduction (GO:1900115)3.10526070
74trabecula formation (GO:0060343)3.09210151
75cell-substrate junction assembly (GO:0007044)3.08800835
76endochondral ossification (GO:0001958)3.05795201
77replacement ossification (GO:0036075)3.05795201
78embryonic skeletal joint morphogenesis (GO:0060272)3.05145270
79mesodermal cell differentiation (GO:0048333)3.05122556
80endothelial cell morphogenesis (GO:0001886)3.04494680
81smooth muscle tissue development (GO:0048745)3.03875576
82positive regulation of epithelial to mesenchymal transition (GO:0010718)3.03823907
83barbed-end actin filament capping (GO:0051016)3.03764212
84protein retention in ER lumen (GO:0006621)3.01412159
85regulation of vascular endothelial growth factor signaling pathway (GO:1900746)3.01132860
86blood vessel maturation (GO:0001955)3.00453123
87G-protein coupled receptor signaling pathway coupled to cGMP nucleotide second messenger (GO:00071992.99624187
88positive regulation of osteoblast proliferation (GO:0033690)2.99560195
89protein hydroxylation (GO:0018126)2.98677300
90regulation of branching involved in salivary gland morphogenesis (GO:0060693)2.97574958
91muscle cell migration (GO:0014812)2.97383550
92regulation of smooth muscle cell migration (GO:0014910)2.97352592
93peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan (GO:0019800)2.96078697
94regulation of extracellular matrix disassembly (GO:0010715)2.96031079
95pericardium development (GO:0060039)2.95491153
96glomerular basement membrane development (GO:0032836)2.95404884
97negative regulation of catenin import into nucleus (GO:0035414)2.95355984
98regulation of cartilage development (GO:0061035)2.95312796
99positive regulation of fibroblast migration (GO:0010763)2.95273783
100middle ear morphogenesis (GO:0042474)2.94054386
101regulation of chondrocyte differentiation (GO:0032330)2.92569494
102lung vasculature development (GO:0060426)2.92200720
103kidney mesenchyme development (GO:0072074)2.91712339
104regulation of mesenchymal cell proliferation (GO:0010464)2.91274795
105glomerular filtration (GO:0003094)2.89804534
106maintenance of protein localization in endoplasmic reticulum (GO:0035437)2.89035858
107hippo signaling (GO:0035329)2.85594485
108regulation of axon extension involved in axon guidance (GO:0048841)2.85525390
109negative regulation of BMP signaling pathway (GO:0030514)2.85307189
110positive regulation of fatty acid oxidation (GO:0046321)2.82622995
111stress fiber assembly (GO:0043149)2.81191474
112cell proliferation involved in kidney development (GO:0072111)2.80936827
113cell migration involved in heart development (GO:0060973)2.80343730
114regulation of metanephric nephron tubule epithelial cell differentiation (GO:0072307)2.78041578
115Golgi transport vesicle coating (GO:0048200)2.77716404
116COPI coating of Golgi vesicle (GO:0048205)2.77716404
117positive regulation of glycogen biosynthetic process (GO:0045725)2.77056833
118Wnt signaling pathway, planar cell polarity pathway (GO:0060071)2.76547481
119venous blood vessel morphogenesis (GO:0048845)2.76099863
120negative regulation of axon guidance (GO:1902668)2.75225433
121cellular response to vascular endothelial growth factor stimulus (GO:0035924)2.71675993
122cochlea morphogenesis (GO:0090103)2.71641481
123regulation of gastrulation (GO:0010470)2.71380631
124protein localization to cell surface (GO:0034394)2.71206627
125wound healing (GO:0042060)2.68797453
126cell aggregation (GO:0098743)2.68704066
127cartilage condensation (GO:0001502)2.68704066
128branching involved in salivary gland morphogenesis (GO:0060445)2.67438542
129cranial suture morphogenesis (GO:0060363)2.67282198
130regulation of collagen metabolic process (GO:0010712)2.67201807
131face morphogenesis (GO:0060325)2.66930163
132heart morphogenesis (GO:0003007)2.66654379
133polarized epithelial cell differentiation (GO:0030859)2.66541831
134sprouting angiogenesis (GO:0002040)2.66192254
135regulation of integrin-mediated signaling pathway (GO:2001044)2.65943765
136regulation of establishment of planar polarity (GO:0090175)2.65769679
137cell-matrix adhesion (GO:0007160)2.65684416
138renal filtration (GO:0097205)2.64711928
139positive regulation of cartilage development (GO:0061036)2.64330981
140artery morphogenesis (GO:0048844)2.63827247
141negative regulation of embryonic development (GO:0045992)2.63676812
142chondroitin sulfate biosynthetic process (GO:0030206)2.62744607
143substrate adhesion-dependent cell spreading (GO:0034446)2.58991242

Predicted upstream transcription factors (ChEA)

RankGene SetZ-score
1TRIM28_21343339_ChIP-Seq_HEK293_Human6.21270651
2TP63_17297297_ChIP-ChIP_HaCaT_Human5.21564429
3RARG_19884340_ChIP-ChIP_MEFs_Mouse4.06087148
4PPARD_23176727_ChIP-Seq_KERATINOCYTES_Mouse3.92692251
5CLOCK_20551151_ChIP-Seq_293T_Human3.32943823
6* TCF21_26020271_ChIP-Seq_SMOOTH_MUSCLE_Human2.91892269
7* ESR1_22446102_ChIP-Seq_UTERUS_Mouse2.89238791
8PPARG_19300518_ChIP-PET_3T3-L1_Mouse2.87113557
9CEBPD_21427703_ChIP-Seq_3T3-L1_Mouse2.84249943
10RUNX2_24764292_ChIP-Seq_MC3T3_Mouse2.76802301
11CEBPB_21427703_ChIP-Seq_3T3-L1_Mouse2.62308493
12NUCKS1_24931609_ChIP-Seq_HEPATOCYTES_Mouse2.58549626
13CJUN_26792858_Chip-Seq_BT549_Human2.40147072
14WT1_19549856_ChIP-ChIP_CCG9911_Human2.29146760
15WT1_20215353_ChIP-ChIP_NEPHRON_PROGENITOR_Mouse2.15909736
16* BRD4_25478319_ChIP-Seq_HGPS_Human2.10949066
17EP300_20729851_ChIP-Seq_FORBRAIN_MIDBRAIN_LIMB_HEART_Mouse2.07840624
18TAF7L_23326641_ChIP-Seq_C3H10T1-2_Mouse1.99365788
19EP300_21415370_ChIP-Seq_HL-1_Mouse1.98935123
20HIF1A_21447827_ChIP-Seq_MCF-7_Human1.98716416
21NFE2L2_20460467_ChIP-Seq_MEFs_Mouse1.83565081
22NRF2_20460467_ChIP-Seq_MEFs_Mouse1.83565081
23TRP63_18441228_ChIP-ChIP_KERATINOCYTES_Mouse1.81224920
24EED_16625203_ChIP-ChIP_MESCs_Mouse1.76818532
25STAT3_22323479_ChIP-Seq_MACROPHAGE_Mouse1.72724454
26RBPJ_22232070_ChIP-Seq_NCS_Mouse1.64028096
27EGR1_19374776_ChIP-ChIP_THP-1_Human1.63599337
28PPAR_26484153_Chip-Seq_NCI-H1993_Human1.61972128
29ESR1_21235772_ChIP-Seq_MCF-7_Human1.61026765
30ESR2_21235772_ChIP-Seq_MCF-7_Human1.60280183
31SMAD_19615063_ChIP-ChIP_OVARY_Human1.57310295
32EZH2_18974828_ChIP-Seq_MESCs_Mouse1.56860571
33RNF2_18974828_ChIP-Seq_MESCs_Mouse1.56860571
34CDX2_19796622_ChIP-Seq_MESCs_Mouse1.55490830
35ELK3_25401928_ChIP-Seq_HUVEC_Human1.54595442
36HOXD13_18407260_ChIP-ChIP_DEVELOPING-LIMBS_Mouse1.49391365
37FOXP3_17237761_ChIP-ChIP_TREG_Mouse1.49210611
38SMC1_22415368_ChIP-Seq_MEFs_Mouse1.48412350
39P300_27058665_Chip-Seq_ZR-75-30cells_Human1.48324160
40SOX9_24532713_ChIP-Seq_HFSC_Mouse1.46153753
41CEBPD_23245923_ChIP-Seq_MEFs_Mouse1.43848922
42THRA_23701648_ChIP-Seq_CEREBELLUM_Mouse1.41393647
43* TP53_18474530_ChIP-ChIP_U2OS_Human1.39148869
44SMAD2_18955504_ChIP-ChIP_HaCaT_Human1.37533797
45SMAD3_18955504_ChIP-ChIP_HaCaT_Human1.37533797
46ZNF217_24962896_ChIP-Seq_MCF-7_Human1.37053748
47TBX20_22328084_ChIP-Seq_HEART_Mouse1.36445361
48TBX20_22080862_ChIP-Seq_HEART_Mouse1.36445361
49TCF21_23034159_ChIP-ChIP_E13_GONADS_Rat1.36104252
50SUZ12_18692474_ChIP-Seq_MESCs_Mouse1.35574469
51JUN_26020271_ChIP-Seq_SMOOTH_MUSCLE_Human1.32376197
52ISL1_27105846_Chip-Seq_CPCs_Mouse1.32147363
53UBF1/2_26484160_Chip-Seq_HMECs_Human1.31446264
54ZNF652_21678463_ChIP-ChIP_ZR75-1_Human1.31106513
55TP53_20018659_ChIP-ChIP_R1E_Mouse1.31056000
56JUND_26020271_ChIP-Seq_SMOOTH_MUSCLE_Human1.30609615
57SMAD4_19686287_ChIP-ChIP_HaCaT_Human1.30402705
58RNF2_16625203_ChIP-ChIP_MESCs_Mouse1.29705970
59TCF3_18467660_ChIP-ChIP_MESCs_Mouse1.28680988
60MTF2_20144788_ChIP-Seq_MESCs_Mouse1.28639706
61BACH1_22875853_ChIP-PCR_HELA_AND_SCP4_Human1.28266483
62SUZ12_18555785_ChIP-Seq_MESCs_Mouse1.26209023
63SUZ12_18692474_ChIP-Seq_MEFs_Mouse1.26001250
64SUZ12_16625203_ChIP-ChIP_MESCs_Mouse1.25225791
65TP53_16413492_ChIP-PET_HCT116_Human1.24420708
66NFIB_24661679_ChIP-Seq_LUNG_Mouse1.23696071
67AR_21572438_ChIP-Seq_LNCaP_Human1.23674954
68SMAD3_22036565_ChIP-Seq_ESCs_Mouse1.21875183
69SUZ12_18974828_ChIP-Seq_MESCs_Mouse1.21807370
70FOXO3_23340844_ChIP-Seq_DLD1_Human1.18241643
71* DMRT1_23473982_ChIP-Seq_TESTES_Mouse1.17565594
72TP53_22127205_ChIP-Seq_IMR90_Human1.16068618
73KLF6_26769127_Chip-Seq_PDAC-Cell_line_Human1.15854508
74SOX2_20726797_ChIP-Seq_SW620_Human1.15745326
75PPARG_20176806_ChIP-Seq_3T3-L1_Mouse1.14567737
76UBF1/2_26484160_Chip-Seq_HMEC-DERIVED_Human1.13943497
77ATF3_23680149_ChIP-Seq_GBM1-GSC_Human1.13356150
78KDM2B_26808549_Chip-Seq_K562_Human1.13198430
79SA1_22415368_ChIP-Seq_MEFs_Mouse1.13051593
80PHC1_16625203_ChIP-ChIP_MESCs_Mouse1.12649397
81STAT6_21828071_ChIP-Seq_BEAS2B_Human1.11623546
82TFAP2C_20629094_ChIP-Seq_MCF-7_Human1.11439141
83ATF3_27146783_Chip-Seq_COLON_Human1.11072646
84KDM2B_26808549_Chip-Seq_SUP-B15_Human1.10001716
85EZH2_27304074_Chip-Seq_ESCs_Mouse1.08538755
86PAX3-FKHR_20663909_ChIP-Seq_RHABDOMYOSARCOMA_Human1.08528235
87PPARG_20887899_ChIP-Seq_3T3-L1_Mouse1.08300924
88ESR1_20079471_ChIP-ChIP_T-47D_Human1.07664975
89ZFP281_18757296_ChIP-ChIP_E14_Mouse1.07211471
90TP53_23651856_ChIP-Seq_MEFs_Mouse1.04175941
91GATA2_21666600_ChIP-Seq_HMVEC_Human1.04005070
92JARID2_20064375_ChIP-Seq_MESCs_Mouse1.03786616
93SMC3_22415368_ChIP-Seq_MEFs_Mouse1.03684607
94SUZ12_20075857_ChIP-Seq_MESCs_Mouse1.02887722
95SALL4_18804426_ChIP-ChIP_XEN_Mouse1.02446435
96JARID2_20075857_ChIP-Seq_MESCs_Mouse1.00815544
97* WT1_25993318_ChIP-Seq_PODOCYTE_Human1.00251509
98ZIC3_20872845_ChIP-ChIP_MESCs_Mouse0.99977487
99RXR_22108803_ChIP-Seq_LS180_Human0.98036217
100MEF2A_21415370_ChIP-Seq_HL-1_Mouse0.97860486
101NKX2-5_21415370_ChIP-Seq_HL-1_Mouse0.97128363
102* FOXP2_23625967_ChIP-Seq_PFSK-1_AND_SK-N-MC_Human0.97097955
103CTNNB1_20460455_ChIP-Seq_HCT116_Human0.96409465
104PIAS1_25552417_ChIP-Seq_VCAP_Human0.96360917
105RACK7_27058665_Chip-Seq_MCF-7_Human0.96340689
106NR1I2_20693526_ChIP-Seq_LIVER_Mouse0.94789705
107ZFP281_27345836_Chip-Seq_ESCs_Mouse0.93196208
108DROSHA_22980978_ChIP-Seq_HELA_Human0.92710721
109RNF2_27304074_Chip-Seq_ESCs_Mouse0.90602025
110SMARCA4_20176728_ChIP-ChIP_TSCs_Mouse0.89272054
111FOXM1_26100407_CHIP-SEQ_Hek293_flp-in_Human0.88984332
112AHR_22903824_ChIP-Seq_MCF-7_Human0.88172164
113RELA_24523406_ChIP-Seq_FIBROSARCOMA_Human0.87826071
114RING1B_27294783_Chip-Seq_ESCs_Mouse0.85110561
115ARNT_22903824_ChIP-Seq_MCF-7_Human0.84539349
116Nerf2_26677805_Chip-Seq_MACROPHAGESS_Mouse0.83747779
117PPARD_21283829_ChIP-Seq_MYOFIBROBLAST_Human0.82274113

Predicted mouse phenotypes (MGI)

RankGene SetZ-score
1MP0008438_abnormal_cutaneous_collagen9.16755561
2MP0005275_abnormal_skin_tensile6.05174081
3MP0005503_abnormal_tendon_morphology5.63046002
4MP0003705_abnormal_hypodermis_morpholog3.86363780
5MP0004272_abnormal_basement_membrane3.28094447
6MP0003279_aneurysm3.15544237
7MP0001958_emphysema3.00531154
8MP0002060_abnormal_skin_morphology2.43451712
9MP0006054_spinal_hemorrhage2.41432050
10MP0005508_abnormal_skeleton_morphology2.23457880
11MP0002108_abnormal_muscle_morphology2.11617009
12MP0000751_myopathy2.09572173
13MP0005257_abnormal_intraocular_pressure2.08418136
14MP0009250_abnormal_appendicular_skeleto2.02389520
15MP0004134_abnormal_chest_morphology1.89346001
16MP0001243_abnormal_dermal_layer1.83743137
17MP0003950_abnormal_plasma_membrane1.83058134
18MP0010030_abnormal_orbit_morphology1.82059572
19MP0005623_abnormal_meninges_morphology1.81356499
20MP0002896_abnormal_bone_mineralization1.80685266
21MP0009384_cardiac_valve_regurgitation1.69299721
22MP0002282_abnormal_trachea_morphology1.68425811
23MP0001299_abnormal_eye_distance/1.68208393
24MP0003566_abnormal_cell_adhesion1.58654403
25MP0001542_abnormal_bone_strength1.51499393
26MP0000013_abnormal_adipose_tissue1.48354398
27MP0003385_abnormal_body_wall1.45557153
28MP0000163_abnormal_cartilage_morphology1.42287336
29MP0003941_abnormal_skin_development1.41749198
30MP0002115_abnormal_skeleton_extremities1.41158149
31MP0003283_abnormal_digestive_organ1.38928454
32MP0005023_abnormal_wound_healing1.38535229
33MP0002933_joint_inflammation1.32707948
34MP0003091_abnormal_cell_migration1.30758643
35MP0002295_abnormal_pulmonary_circulatio1.30501987
36MP0005390_skeleton_phenotype1.27261084
37MP0000733_abnormal_muscle_development1.27116941
38MP0000428_abnormal_craniofacial_morphol1.26043709
39MP0010386_abnormal_urinary_bladder1.25443566
40MP0004858_abnormal_nervous_system1.21244577
41MP0005076_abnormal_cell_differentiation1.21117601
42MP0002932_abnormal_joint_morphology1.12816535
43MP0002089_abnormal_postnatal_growth/wei1.12035200
44MP0003045_fibrosis1.11636565
45MP0000003_abnormal_adipose_tissue1.10517058
46MP0002113_abnormal_skeleton_development1.10228468
47MP0010352_gastrointestinal_tract_polyps1.07961584
48MP0000767_abnormal_smooth_muscle1.06485067
49MP0000534_abnormal_ureter_morphology1.05866104
50MP0002168_other_aberrant_phenotype1.05405475
51MP0003942_abnormal_urinary_system1.02673115
52MP0000762_abnormal_tongue_morphology1.01335759
53MP0000049_abnormal_middle_ear1.01002812
54MP0002249_abnormal_larynx_morphology1.00331578
55MP0003115_abnormal_respiratory_system1.00319799
56MP0000750_abnormal_muscle_regeneration1.00255235
57MP0003755_abnormal_palate_morphology0.99996137
58MP0002998_abnormal_bone_remodeling0.99058260
59MP0002109_abnormal_limb_morphology0.98383077
60MP0009053_abnormal_anal_canal0.94203681
61MP0009780_abnormal_chondrocyte_physiolo0.92605822
62MP0000462_abnormal_digestive_system0.92389567
63MP0004185_abnormal_adipocyte_glucose0.91010589
64MP0005171_absent_coat_pigmentation0.88544371
65MP0005375_adipose_tissue_phenotype0.87581012
66MP0002116_abnormal_craniofacial_bone0.87307455
67MP0002254_reproductive_system_inflammat0.86654134
68MP0000432_abnormal_head_morphology0.85399434
69MP0005670_abnormal_white_adipose0.84364149
70MP0001348_abnormal_lacrimal_gland0.83982836
71MP0008004_abnormal_stomach_pH0.83686984
72MP0003935_abnormal_craniofacial_develop0.83548053
73MP0003448_altered_tumor_morphology0.81943030
74MP0003937_abnormal_limbs/digits/tail_de0.79874573
75MP0003795_abnormal_bone_structure0.79849276
76MP0005666_abnormal_adipose_tissue0.78366761
77MP0003122_maternal_imprinting0.75416121
78MP0002877_abnormal_melanocyte_morpholog0.74819579
79MP0010368_abnormal_lymphatic_system0.74331215
80MP0000759_abnormal_skeletal_muscle0.72687948
81MP0001533_abnormal_skeleton_physiology0.72638889
82MP0002111_abnormal_tail_morphology0.72133797
83MP0005369_muscle_phenotype0.71151928
84MP0005197_abnormal_uvea_morphology0.70032015
85MP0004087_abnormal_muscle_fiber0.69731960
86MP0002233_abnormal_nose_morphology0.69242773
87MP0000537_abnormal_urethra_morphology0.68802559
88MP0000749_muscle_degeneration0.68735457
89MP0002128_abnormal_blood_circulation0.67513303
90MP0001614_abnormal_blood_vessel0.66994167
91MP0002114_abnormal_axial_skeleton0.66963718
92MP0001177_atelectasis0.66917028
93MP0004084_abnormal_cardiac_muscle0.66590231
94MP0010771_integument_phenotype0.66513143
95MP0002837_dystrophic_cardiac_calcinosis0.65725088
96MP0000579_abnormal_nail_morphology0.65247035
97MP0001270_distended_abdomen0.64240287
98MP0001175_abnormal_lung_morphology0.64172432
99MP0005595_abnormal_vascular_smooth0.64143740
100MP0001661_extended_life_span0.64045553
101MP0002938_white_spotting0.62572964
102MP0000538_abnormal_urinary_bladder0.62360049
103MP0001915_intracranial_hemorrhage0.62178259
104MP0000566_synostosis0.62000268
105MP0004197_abnormal_fetal_growth/weight/0.61860482
106MP0003300_gastrointestinal_ulcer0.61704597
107MP0005388_respiratory_system_phenotype0.61001338
108MP0002133_abnormal_respiratory_system0.61001338
109MP0005165_increased_susceptibility_to0.60368700
110MP0001879_abnormal_lymphatic_vessel0.60049612
111MP0000516_abnormal_urinary_system0.59936754
112MP0005367_renal/urinary_system_phenotyp0.59936754
113MP0001849_ear_inflammation0.59764271
114MP0005164_abnormal_response_to0.59255447
115MP0002925_abnormal_cardiovascular_devel0.57177746
116MP0004036_abnormal_muscle_relaxation0.55958766
117MP0002177_abnormal_outer_ear0.54216901
118MP0005620_abnormal_muscle_contractility0.54073261
119MP0004883_abnormal_blood_vessel0.52628962
120MP0003828_pulmonary_edema0.47871183
121MP0006138_congestive_heart_failure0.47635201

Predicted human phenotypes

RankGene SetZ-score
1Protrusio acetabuli (HP:0003179)7.53683339
2Premature rupture of membranes (HP:0001788)7.23043032
3* Ankle contracture (HP:0006466)5.78031192
4Aortic dissection (HP:0002647)4.98828205
5Atrophic scars (HP:0001075)4.78781074
6Broad metatarsal (HP:0001783)4.71135155
7* Follicular hyperkeratosis (HP:0007502)4.59698639
8Soft skin (HP:0000977)4.57477602
9Shallow orbits (HP:0000586)4.38389012
10Increased connective tissue (HP:0009025)4.35238206
11* Type 1 muscle fiber predominance (HP:0003803)4.34430727
12Neonatal short-limb short stature (HP:0008921)4.24369422
13Fragile skin (HP:0001030)4.23902782
14Peritonitis (HP:0002586)4.14626856
15Bladder diverticulum (HP:0000015)4.04151624
16Cerebral aneurysm (HP:0004944)3.83701049
17Cervical subluxation (HP:0003308)3.81224401
18Arterial tortuosity (HP:0005116)3.68472343
19Mitral valve prolapse (HP:0001634)3.65570831
20Dilatation of the ascending aorta (HP:0005111)3.61541427
21* Slender build (HP:0001533)3.54744686
22Genu recurvatum (HP:0002816)3.48934024
23* Spinal rigidity (HP:0003306)3.42792766
24Abnormality of dentin (HP:0010299)3.27369643
25Aortic aneurysm (HP:0004942)3.12973669
26Blue sclerae (HP:0000592)3.02214736
27Wormian bones (HP:0002645)3.01133959
28Biconcave vertebral bodies (HP:0004586)2.88385791
29Osteoarthritis (HP:0002758)2.86428616
30* Mildly elevated creatine phosphokinase (HP:0008180)2.82441517
31Hyperextensible skin (HP:0000974)2.81617090
32Aplasia/Hypoplasia of the 4th metacarpal (HP:0010042)2.80881254
33Short 4th metacarpal (HP:0010044)2.80881254
34Hypoplastic ischia (HP:0003175)2.79965215
35Wrist flexion contracture (HP:0001239)2.78514996
36* Increased variability in muscle fiber diameter (HP:0003557)2.71121032
37Bowel diverticulosis (HP:0005222)2.62276200
38Infantile muscular hypotonia (HP:0008947)2.55643346
39Vertebral compression fractures (HP:0002953)2.55500561
40Mild short stature (HP:0003502)2.54226484
41Osteolytic defects of the phalanges of the hand (HP:0009771)2.50529309
42Osteolytic defects of the hand bones (HP:0009699)2.50529309
43Thoracolumbar scoliosis (HP:0002944)2.49683060
44* Joint laxity (HP:0001388)2.49549471
45Ectopia lentis (HP:0001083)2.46947352
46Abnormality of the ischium (HP:0003174)2.46469861
47Mesomelia (HP:0003027)2.44616049
48Cupped ribs (HP:0000887)2.42515845
49Abnormality of the acetabulum (HP:0003170)2.39701485
50Deviation of the hallux (HP:0010051)2.39101442
51Aplasia/Hypoplasia of the pubic bone (HP:0009104)2.38386820
52Abnormal delivery (HP:0001787)2.37441524
53Wide anterior fontanel (HP:0000260)2.37338049
54Epiphyseal dysplasia (HP:0002656)2.35223068
55* Abnormality of skeletal muscle fiber size (HP:0012084)2.31486558
56* Elbow flexion contracture (HP:0002987)2.29920305
57Hallux valgus (HP:0001822)2.26517141
58Achilles tendon contracture (HP:0001771)2.26272905
59Ulnar bowing (HP:0003031)2.25795529
60Alopecia of scalp (HP:0002293)2.24653742
61Aortic valve stenosis (HP:0001650)2.24118680
62Striae distensae (HP:0001065)2.23982455
63Abnormality of the 4th metacarpal (HP:0010012)2.22964688
64Overgrowth (HP:0001548)2.19902816
65Hip contracture (HP:0003273)2.17855472
66Broad long bones (HP:0005622)2.17744568
67Bell-shaped thorax (HP:0001591)2.16356783
68Nonimmune hydrops fetalis (HP:0001790)2.15880692
69Vitreoretinal degeneration (HP:0000655)2.15366576
70Joint stiffness (HP:0001387)2.11918381
71Mitral stenosis (HP:0001718)2.11731141
72Broad ribs (HP:0000885)2.11244837
73Venous abnormality (HP:0002624)2.07880993
74Aortic regurgitation (HP:0001659)2.07086180
75Platyspondyly (HP:0000926)2.03712613
76Venous insufficiency (HP:0005293)2.02744690
77Long toe (HP:0010511)2.01914561
78Aneurysm (HP:0002617)2.01637621
79Abnormality of the peritoneum (HP:0002585)2.01578825
80Breech presentation (HP:0001623)2.00647981
81Thin bony cortex (HP:0002753)2.00478290
82Tibial bowing (HP:0002982)1.99465352
83Mitral regurgitation (HP:0001653)1.99151884
84Delayed closure of the anterior fontanelle (HP:0001476)1.98411042
85Morphological abnormality of the middle ear (HP:0008609)1.98321239
86Inguinal hernia (HP:0000023)1.97751365
87Abnormality of the Achilles tendon (HP:0005109)1.97232866
88Redundant skin (HP:0001582)1.95673283
89Syringomyelia (HP:0003396)1.93907904
90Spinal cord lesions (HP:0100561)1.93907904
91Delayed cranial suture closure (HP:0000270)1.92860845
92Coronal craniosynostosis (HP:0004440)1.92586250
93Spondylolisthesis (HP:0003302)1.92343632
94Limited hip movement (HP:0008800)1.91483725
95Muscle fiber splitting (HP:0003555)1.91172129
96Camptodactyly of toe (HP:0001836)1.89081554
97Decreased skull ossification (HP:0004331)1.88392577
98Coxa vara (HP:0002812)1.87929045
99Disproportionate tall stature (HP:0001519)1.87656333
100* Protruding ear (HP:0000411)1.86713418
101Flat cornea (HP:0007720)1.85542134
102Natal tooth (HP:0000695)1.85220391
103Lumbar hyperlordosis (HP:0002938)1.85195305
104Short nail (HP:0001799)1.85032693
105Abnormal ossification of hand bones (HP:0005921)1.84946794
106Vascular tortuosity (HP:0004948)1.84094540
107Increased corneal curvature (HP:0100692)1.83989236
108Keratoconus (HP:0000563)1.83989236
109Abnormality of skull ossification (HP:0002703)1.82894018
110Premature skin wrinkling (HP:0100678)1.82375296
111Femoral bowing (HP:0002980)1.82184555
112Renal duplication (HP:0000075)1.81924314
113Knee flexion contracture (HP:0006380)1.81504904
114Cardiovascular calcification (HP:0011915)1.79602187
115* Generalized amyotrophy (HP:0003700)1.78844987
116Renovascular hypertension (HP:0100817)1.77976190
117Buphthalmos (HP:0000557)1.77864684
118Exostoses (HP:0100777)1.77685038
119Ovoid vertebral bodies (HP:0003300)1.77636377
120Joint contractures involving the joints of the feet (HP:0100492)1.76830689
121Flexion contracture of toe (HP:0005830)1.76830689
122Round ear (HP:0100830)1.76343189
123Thin skin (HP:0000963)1.76245173
124Broad phalanx (HP:0006009)1.76197317
125Turricephaly (HP:0000262)1.75163459
126* Hypoventilation (HP:0002791)1.72464697
127Absent frontal sinuses (HP:0002688)1.71903157

Predicted kinase interactions (KEA)

RankGene SetZ-score
1DDR25.95915460
2TRIB34.38340286
3SIK14.18528680
4TTN3.81124922
5PDGFRA3.69370969
6LATS13.28540399
7AKT32.85906247
8PKN22.81209047
9LATS22.36103679
10RIPK12.35893604
11ERN12.24434463
12FGFR21.94830643
13BMX1.85107139
14PAK21.79325864
15CAMK1D1.77455676
16EPHB21.76216584
17EPHA31.67245911
18STK381.62150171
19FGFR11.57568223
20STK31.53484109
21TRPM71.52247248
22PDGFRB1.51801986
23TGFBR21.50972400
24FRK1.43321340
25FER1.38938043
26MET1.37686786
27PTK61.33985635
28DMPK1.33458297
29EEF2K1.33049429
30PTK21.27868798
31CAMK1G1.23640137
32PIK3CA1.18206729
33MAP3K61.15732626
34ROCK11.13368277
35MTOR1.12813446
36RPS6KA21.12530305
37MAP3K31.10810151
38MAP3K101.09562940
39GRK71.00335044
40LRRK21.00314236
41STK38L0.99416332
42MYLK0.92393984
43PTK2B0.92316215
44ILK0.90878290
45GRK50.89537750
46PAK30.89485781
47FLT30.84190839
48ERBB40.83675694
49JAK10.83420053
50PAK40.80008981
51FGFR30.78192828
52RET0.78051456
53GRK10.77800883
54RPS6KA40.77085757
55NEK90.75630758
56FGFR40.74512085
57PRKCH0.74367340
58MAPK70.74334464
59PRPF4B0.73745367
60NUAK10.73016687
61MOS0.71868087
62ROCK20.70355298
63EPHB10.68777421
64MAP2K10.67526326
65SCYL20.66100038
66PRKD20.65847604
67MELK0.65339298
68ADRBK20.64259067
69TAOK20.62203814
70LMTK20.61529637
71INSR0.60319249
72CSF1R0.58303926
73RPS6KL10.57970375
74RPS6KC10.57970375
75PRKD10.57968180
76ICK0.57870674
77CLK10.57258135
78PRKG20.56024777
79IRAK30.53365810
80PIM20.52713952
81TIE10.52603419
82PRKD30.52252123
83ZAP700.50331580
84NTRK10.49910277
85CDK60.49574706
86MST1R0.49271381
87PLK20.47598842
88ERBB30.47541624
89MAP2K30.47049584
90PIK3CG0.46655822
91MAPKAPK30.44479085
92PDK40.44303825
93PDK30.44303825
94MAPK40.44108079
95CDK120.43922877
96RPS6KA60.43277804
97GSK3A0.42848543
98PDK20.42794581
99ADRBK10.41132211
100DYRK1B0.41000806
101LIMK10.39451384
102SRC0.39111360
103CDC42BPA0.38515441
104DAPK30.37492703
105KIT0.37369924
106IGF1R0.37360980
107CDK80.36005417
108PAK60.35761458
109MAPK10.35400535
110TAOK10.33931437
111CHUK0.33603300
112CAMK2G0.32681085
113MAPKAPK20.32294100
114CAMKK10.32223948
115ABL20.31625438
116TYK20.31228459
117WNK10.30230590
118EIF2AK20.30037110
119PAK10.29522248
120MAP3K70.28693529
121JAK30.28387602
122MARK10.28313435
123TESK10.27114960
124MARK20.27108416
125KSR20.26592296
126PRKCE0.24800463
127TGFBR10.24728251
128ABL10.24285282
129CAMKK20.22409672
130PRKAA20.20733993

Predicted pathways (KEGG)

RankGene SetZ-score
1* ECM-receptor interaction_Homo sapiens_hsa045125.71165955
2* Protein digestion and absorption_Homo sapiens_hsa049744.44315505
3* Focal adhesion_Homo sapiens_hsa045103.40721772
4Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate_Homo sapiens_hsa005322.89451151
5Amoebiasis_Homo sapiens_hsa051462.48253157
6Proteoglycans in cancer_Homo sapiens_hsa052052.30375461
7Basal cell carcinoma_Homo sapiens_hsa052172.27396268
8AGE-RAGE signaling pathway in diabetic complications_Homo sapiens_hsa049332.19218211
9Hedgehog signaling pathway_Homo sapiens_hsa043401.96420363
10Small cell lung cancer_Homo sapiens_hsa052221.89651127
11* PI3K-Akt signaling pathway_Homo sapiens_hsa041511.88050690
12Adherens junction_Homo sapiens_hsa045201.86512640
13Glycosaminoglycan degradation_Homo sapiens_hsa005311.83545283
14Arrhythmogenic right ventricular cardiomyopathy (ARVC)_Homo sapiens_hsa054121.79081102
15Regulation of lipolysis in adipocytes_Homo sapiens_hsa049231.77002181
16Malaria_Homo sapiens_hsa051441.76985303
17Hypertrophic cardiomyopathy (HCM)_Homo sapiens_hsa054101.73837095
18Dilated cardiomyopathy_Homo sapiens_hsa054141.72359903
19TGF-beta signaling pathway_Homo sapiens_hsa043501.68642327
20MicroRNAs in cancer_Homo sapiens_hsa052061.60020232
21Bladder cancer_Homo sapiens_hsa052191.60014457
22Bacterial invasion of epithelial cells_Homo sapiens_hsa051001.53582785
23Hippo signaling pathway_Homo sapiens_hsa043901.47450475
24Melanoma_Homo sapiens_hsa052181.36553083
25Chronic myeloid leukemia_Homo sapiens_hsa052201.30012466
26Glycosaminoglycan biosynthesis - heparan sulfate / heparin_Homo sapiens_hsa005341.29227831
27Prostate cancer_Homo sapiens_hsa052151.20994295
28Endocrine and other factor-regulated calcium reabsorption_Homo sapiens_hsa049611.17245296
29Pathways in cancer_Homo sapiens_hsa052001.15439682
30Central carbon metabolism in cancer_Homo sapiens_hsa052301.15320222
31Platelet activation_Homo sapiens_hsa046111.13619289
32Prion diseases_Homo sapiens_hsa050201.13028351
33Protein processing in endoplasmic reticulum_Homo sapiens_hsa041411.10391290
34Complement and coagulation cascades_Homo sapiens_hsa046101.06733593
35Regulation of actin cytoskeleton_Homo sapiens_hsa048101.06052337
36Glioma_Homo sapiens_hsa052141.05950851
37Viral myocarditis_Homo sapiens_hsa054161.01116408
38Insulin resistance_Homo sapiens_hsa049310.99884242
39Wnt signaling pathway_Homo sapiens_hsa043100.99863818
40Signaling pathways regulating pluripotency of stem cells_Homo sapiens_hsa045500.97690112
41PPAR signaling pathway_Homo sapiens_hsa033200.97449393
42Toxoplasmosis_Homo sapiens_hsa051450.95275893
43Fatty acid biosynthesis_Homo sapiens_hsa000610.92025867
44AMPK signaling pathway_Homo sapiens_hsa041520.90219908
45Adipocytokine signaling pathway_Homo sapiens_hsa049200.89332263
46Renin-angiotensin system_Homo sapiens_hsa046140.87719475
47Longevity regulating pathway - mammal_Homo sapiens_hsa042110.87291481
48Lysine degradation_Homo sapiens_hsa003100.86831988
49mTOR signaling pathway_Homo sapiens_hsa041500.86547726
50Other glycan degradation_Homo sapiens_hsa005110.84178629
51Pancreatic cancer_Homo sapiens_hsa052120.82326261
52Leukocyte transendothelial migration_Homo sapiens_hsa046700.78591806
53Rap1 signaling pathway_Homo sapiens_hsa040150.77699022
54Other types of O-glycan biosynthesis_Homo sapiens_hsa005140.77237712
55Axon guidance_Homo sapiens_hsa043600.75243909
56Mucin type O-Glycan biosynthesis_Homo sapiens_hsa005120.73672811
57HTLV-I infection_Homo sapiens_hsa051660.72485637
58Melanogenesis_Homo sapiens_hsa049160.70696062
59Estrogen signaling pathway_Homo sapiens_hsa049150.70059663
60Tight junction_Homo sapiens_hsa045300.70054395
61TNF signaling pathway_Homo sapiens_hsa046680.70002033
62Colorectal cancer_Homo sapiens_hsa052100.69275456
63Dorso-ventral axis formation_Homo sapiens_hsa043200.67717788
64cGMP-PKG signaling pathway_Homo sapiens_hsa040220.66494523
65Pertussis_Homo sapiens_hsa051330.65991253
66Insulin signaling pathway_Homo sapiens_hsa049100.65700963
67Notch signaling pathway_Homo sapiens_hsa043300.64982731
68Endometrial cancer_Homo sapiens_hsa052130.64893607
69Longevity regulating pathway - multiple species_Homo sapiens_hsa042130.64776243
70HIF-1 signaling pathway_Homo sapiens_hsa040660.62595398
71Vibrio cholerae infection_Homo sapiens_hsa051100.62389321
72Renal cell carcinoma_Homo sapiens_hsa052110.62160091
73Thyroid hormone signaling pathway_Homo sapiens_hsa049190.59671412
74Prolactin signaling pathway_Homo sapiens_hsa049170.58820609
75Ovarian steroidogenesis_Homo sapiens_hsa049130.58528915
76Fatty acid metabolism_Homo sapiens_hsa012120.56730827
77Citrate cycle (TCA cycle)_Homo sapiens_hsa000200.56579968
78Cocaine addiction_Homo sapiens_hsa050300.56402232
79Thyroid hormone synthesis_Homo sapiens_hsa049180.55315596
80Vascular smooth muscle contraction_Homo sapiens_hsa042700.53803955
81Amino sugar and nucleotide sugar metabolism_Homo sapiens_hsa005200.53595804
82Gap junction_Homo sapiens_hsa045400.52706778
83Neurotrophin signaling pathway_Homo sapiens_hsa047220.52701566
84p53 signaling pathway_Homo sapiens_hsa041150.52234910
85Aldosterone-regulated sodium reabsorption_Homo sapiens_hsa049600.51483783
86GnRH signaling pathway_Homo sapiens_hsa049120.51233690
87Phagosome_Homo sapiens_hsa041450.51045559
88Oxytocin signaling pathway_Homo sapiens_hsa049210.50282480
89Lysosome_Homo sapiens_hsa041420.50258170
90Calcium signaling pathway_Homo sapiens_hsa040200.49654213
91Type II diabetes mellitus_Homo sapiens_hsa049300.49500086
92FoxO signaling pathway_Homo sapiens_hsa040680.48695402
93Cytokine-cytokine receptor interaction_Homo sapiens_hsa040600.48532141
94Adrenergic signaling in cardiomyocytes_Homo sapiens_hsa042610.46927873
95Choline metabolism in cancer_Homo sapiens_hsa052310.46628583
96Hepatitis B_Homo sapiens_hsa051610.46490139
972-Oxocarboxylic acid metabolism_Homo sapiens_hsa012100.46215459
98Glucagon signaling pathway_Homo sapiens_hsa049220.45718528
99Chagas disease (American trypanosomiasis)_Homo sapiens_hsa051420.45494885
100N-Glycan biosynthesis_Homo sapiens_hsa005100.45465355
101Thyroid cancer_Homo sapiens_hsa052160.43655474
102Ras signaling pathway_Homo sapiens_hsa040140.43309143
103Inflammatory mediator regulation of TRP channels_Homo sapiens_hsa047500.43204132
104Sphingolipid signaling pathway_Homo sapiens_hsa040710.42006355
105Cholinergic synapse_Homo sapiens_hsa047250.41806268
106Viral carcinogenesis_Homo sapiens_hsa052030.40957973
107ErbB signaling pathway_Homo sapiens_hsa040120.40467901
108Vasopressin-regulated water reabsorption_Homo sapiens_hsa049620.39775433
109Jak-STAT signaling pathway_Homo sapiens_hsa046300.39631715
110Phospholipase D signaling pathway_Homo sapiens_hsa040720.39351860
111Acute myeloid leukemia_Homo sapiens_hsa052210.39169233
112Aldosterone synthesis and secretion_Homo sapiens_hsa049250.37453534
113Endocytosis_Homo sapiens_hsa041440.36079526
114Shigellosis_Homo sapiens_hsa051310.35427473
115Glycosaminoglycan biosynthesis - keratan sulfate_Homo sapiens_hsa005330.34722332
116MAPK signaling pathway_Homo sapiens_hsa040100.33263825
117VEGF signaling pathway_Homo sapiens_hsa043700.32927481
118Apoptosis_Homo sapiens_hsa042100.31893301
119Caffeine metabolism_Homo sapiens_hsa002320.31386502
120Osteoclast differentiation_Homo sapiens_hsa043800.30019450
121Fatty acid degradation_Homo sapiens_hsa000710.29615507
122Transcriptional misregulation in cancer_Homo sapiens_hsa052020.29409515
123Renin secretion_Homo sapiens_hsa049240.29282528

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