184 proteins up-regualated at 0h in SARS-CoV-2 infected cells from Bouhaddou et al. 2020	Proteins differentially phosphorylated in 0h SARS-CoV-2-infected vs 0h mock-infected Vero E6 cells from Bouhaddou et al. (2020) The Global Phosphorylation Landscape of SARS-CoV-2 Infection. (Cell, 8/6/2020)	MPHOSPH10	APC	CTSL	MAP7D1	RBL2	RNF2	EZR	RETREG3	LAP3	HSPB1	PLCB3	FBL	ARHGEF11	FRMD4B	ARHGEF12	TLN1	MED14	NCOA5	EIF4B	OSBPL6	PARD6B	PATJ	PEAK1	OTUD7B	RPLP1	C2CD2L	TMEM184B	SRSF9	MBD1	LMNA	EIF3B	WDR13	PLK1	ARHGAP29	ITSN1	EPS8	SORT1	ABCB1	MYC	ABCF1	HMGA1	SRSF1	BCL9L	PROSER2	FAM83G	ITPR3	SAFB	NCAPD2	RPS28	HNRNPM	PCBP1	MATR3	EFNB1	VPS35	ATP2B1	SSR3	CBX3	SLC18A3	TMX1	DDX18	HAVCR1	DKC1	PITPNB	LEO1	CWC22	FXR2	ZDHHC23	SRSF7	MAP1B	SETD2	GAS2L1	MTFR1L	SIK1	TRA2B	PRKD2	MCM7	WDHD1	LMNB2	BET1	BCL10	NIPBL	THRAP3	SRRM2	RHBDF2	N4BP1	PYGL	SON	SRSF12	PRKCD	ZPR1	PSMD11	CAMSAP1	NADK	SEC22B	TRAPPC10	C9ORF78	AHNAK	DDX54	KIF13A	NSRP1	AKAP10	CPSF3	EEPD1	PHLDB1	DDX39A	HDAC7	NOP56	LUZP1	MDC1	TTC7A	KAT5	IFT43	PTK7	ACACA	RALGAPA2	DCLK1	ZBTB21	EVA1A	TP53BP1	PRKDC	TBC1D15	UBXN7	PPM1B	MAP3K2	PEA15	RBM17	NSD3	SUDS3	ZC3HC1	BYSL	CD2AP	MAGED2	DPF2	GAPVD1	RASAL2	VPS26B	PHIP	OSBPL10	RBM15	SVIL	CDK13	GPATCH8	TJAP1	CDK14	FRYL	DOCK7	PHKA1	HIRIP3	BAZ2A	SAFB2	SF3B2	PDLIM7	SERBP1	GIT1	CXADR	COL15A1	SMG8	ZMYND8	SRRM1	ZMYM3	NKTR	GNL3L	UBE4B	TCP11L1	CLASP2	R3HDM1	GARS1	FAM160A2	RIF1	ARMCX4	BAG2	WASHC2A	WASHC2C	DLG5	SYTL4	SLAIN2	KDM2B	SLC35C2	H2AX	GKAP1	KRIT1	SIK1B	OXSR1	NIBAN1
277 proteins down-regualated at 0h in SARS-CoV-2 infected cells from Bouhaddou et al. 2020	Proteins differentially phosphorylated in 0h SARS-CoV-2-infected vs 0h mock-infected Vero E6 cells from Bouhaddou et al. (2020) The Global Phosphorylation Landscape of SARS-CoV-2 Infection. (Cell, 8/6/2020)	NUP210	PTPN14	MAPK3	RB1	APC	LARP1	NEK9	MAP7D1	LARP4B	MACF1	EPB41L1	AHSG	TOR1AIP1	ZC3H18	ELAVL1	ANXA2	TUBB4B	TTN	DNMT1	TP53	UBAP2L	POLA2	NPM1	NUP98	MARK2	PLEC	SPTBN1	MAPK1	RAB11FIP2	ARHGEF12	TLN1	EIF4B	SH3D19	SLC4A4	YAP1	MARCKS	ZEB1	TJP1	CEP170	TAB2	SRRT	KHSRP	C2CD2L	STMN1	GSK3A	TBC1D9B	AKT1	GIGYF1	LMNA	ZYX	PLK1	TOP2A	EZH2	LMNB1	SLC16A1	KIAA0930	CTNND1	KIF2C	SH2D4A	SMTN	CDCA2	TPX2	ANLN	NCAPH	EPS8	CDC20	HJURP	ARHGAP23	MKI67	RAPH1	DTL	TOPORS	LLGL2	CDYL	MAVS	EP400	BCL9L	ARHGEF5	ZNF687	PRICKLE2	MAP2K3	PRC1	KIF13B	ECT2	PBK	RACGAP1	CHAF1A	AAK1	BMPR2	PCBP1	RAPGEF2	RPS10	VIM	SP3	ADRM1	TNS3	PHLDB2	VCL	KIFC3	PPFIA3	BRD1	FLRT3	IRF2BPL	CDC42EP3	HAT1	DKC1	NELFE	RPS6KA3	TMPO	ANKRD39	CWC22	SLC25A46	WDR11	TAF7	HIVEP2	CDCA7	EMD	SFSWAP	ZC3HAV1	RGS10	DYNC1LI1	MCM4	HAUS6	LMNB2	C1ORF174	GTF2I	BBX	ATRX	BOP1	TWISTNB	BOD1L1	THRAP3	SRRM2	LIMA1	HPS5	KHDRBS1	AKAP11	NONO	ETV3	PTPN1	UFD1	RANBP2	CTCF	ARAF	SEC16A	SPP1	C12ORF45	PPHLN1	AHNAK	ALKBH5	CCZ1B	DDX54	PHC3	MTA2	WDR44	AHCTF1	NSRP1	MSH6	RBBP6	NT5C2	DNTTIP2	NCOR2	STRN4	ZSCAN18	MYO9B	LUZP1	MDC1	CTPS1	SMPD4	FLNC	FHOD1	NAP1L4	NCOR1	SSRP1	TRIM24	JMJD1C	EHMT2	PCM1	IL6ST	TP53BP1	PIK3R4	MAPK9	BCL2L13	RANBP10	ANKLE2	PPP2R5A	PHF6	NCOA1	SYNPO	KAT7	RBM17	AFDN	TERF2	SUDS3	NUP188	TCOF1	RRP1B	MLLT1	NOLC1	SNRPC	ARHGEF2	MSL3	ATXN2L	MED1	DCP1A	DDX24	KDM2A	ABTB2	GPS1	RPA1	CCDC6	AEBP2	IGF2BP2	APBB2	TBC1D4	CDK13	CLIP1	ARPP19	PDLIM4	C16ORF72	CWC25	PALLD	OTUD4	RIPOR3	H1-3	H1-5	SEPTIN9	ATL3	LNPK	DOCK7	ZC3H13	HIRIP3	HNRNPU	DBNL	TRIP12	XRN2	FNBP1	PDLIM7	DCDC2	RSBN1	ENSA	SRRM1	NKTR	SORBS1	RAB3IP	DBN1	POM121	UBE4B	FAM53C	KLC2	SGTB	WDR47	ZNF638	SHROOM2	CPSF7	CCZ1	DEPDC5	FAM122A	POM121C	FBXO46	IQSEC1	DNTTIP1	SNTB2	SURF6	MIEF1	PAPOLG	AKTIP	CLASP1	MAP7D3	WIPF2	RSL1D1	LRCH3	SLAIN2	SEPTIN7	TASOR	CBX8	CUSTOS
318 proteins up-regualated at 2h in SARS-CoV-2 infected cells from Bouhaddou et al. 2020	Proteins differentially phosphorylated in 2h SARS-CoV-2-infected vs 0h mock-infected Vero E6 cells from Bouhaddou et al. (2020) The Global Phosphorylation Landscape of SARS-CoV-2 Infection. (Cell, 8/6/2020)	MYH9	MPHOSPH10	HDAC2	RB1	ATP13A3	HSP90AB1	APC	CTSL	SPTAN1	VCP	PKP2	RRP9	MACF1	MIB1	SLC26A6	TOR1AIP1	RETREG3	PKM	ZC3H18	BRAF	LAP3	STOML2	LARP7	FRMD6	SNIP1	NFATC2IP	FBL	DNMT1	NPM1	PPIG	NUP98	PRKAR2A	PLEC	CHD1	ARHGEF12	TLN1	SAC3D1	MNAT1	NCOA5	EIF4B	SLC4A4	PRKAA2	CYBRD1	FNBP1L	TJP1	KIAA1143	NUMA1	SRSF9	EIF3B	WDR13	TOP2A	EZH2	SAP30	SLC16A1	STARD13	ITSN1	CDK1	EIF4G1	SORT1	NCAPG	AKAP12	IWS1	CTNNA1	STK4	STK3	ABCF1	HMGA1	SRSF1	MTOR	WWC1	PAK4	LSR	ALPL	MAP2K3	HNRNPH1	ARHGAP1	HERC2	CTR9	SAFB	PSMA3	PACS1	SCAF1	OGFR	LRCH4	FAM83D	HELLS	TIMELESS	RNF213	DPYSL2	EEF2	RBBP7	LIMCH1	ALDH1A1	HNRNPUL1	MATR3	SRP14	TNS3	FNDC3B	PRPSAP1	EEF1G	FASN	VPS35	PDCL3	NUCKS1	MYO18A	VCL	PGRMC1	RBM8A	SLC18A3	FOXK1	BRD1	ACIN1	TAF12	DDX18	CDC26	HAVCR1	HDAC1	DKC1	PCBD1	SSB	SKP1	RPS6KA3	BZW1	AKR1B1	PITPNB	LEO1	WBP11	MFAP1	VGF	ZDHHC23	MAP1B	SURF2	KDM3B	CLIP2	CDH6	PRKD2	MTCL1	MCM4	SLC20A1	MCM7	HNRNPA2B1	RPL22L1	UTP20	KIF1A	EIF5B	TWISTNB	THRAP3	RSF1	SRRM2	RBM34	RCAN1	SH3KBP1	PYGL	SF3B1	SON	SRSF12	HIST2H2BF	DPYSL3	RANBP2	OSTF1	EIF2AK4	CREB1	GNAS	ARRB1	TXNL1	SAE1	PRPF6	USP39	TNFAIP1	SEC16A	HACE1	DTNB	C9ORF78	AHNAK	CDC42BPB	ACAT1	CCZ1B	STK25	FIP1L1	DDX54	HNRNPUL2	MPHOSPH8	EPHA2	RBBP6	CEBPZ	AKAP10	CPSF3	ZMYM2	RALY	EEPD1	SYNE2	POLR2A	FBXO10	STK24	NOP56	MDC1	TTC7A	CTPS1	KAT5	RRP7A	NAP1L4	PBRM1	PTK7	IGF2R	SRF	ELAC2	SSRP1	CCAR2	USP28	TNKS1BP1	DCLK1	RRAS2	SUZ12	ZBTB21	LRWD1	WDFY3	ATG2B	TP53BP1	UBR5	RABGAP1	HUWE1	PSMF1	TBC1D15	SLC4A1AP	UBXN7	GBF1	PPM1B	PHF6	PEA15	RBM17	NSD3	ARNT	GPSM1	BCLAF1	CCNH	POLR3E	PPIL4	BYSL	CD2AP	WDR70	VIRMA	ARHGEF2	FLNB	DCBLD2	SLC4A7	GTF3C4	DPF2	DDX24	KDM2A	ARHGEF28	CARHSP1	PHIP	DENND4C	ICE1	RBM15	GPATCH8	ZFR	AP3D1	UBE2O	NMD3	BCKDHA	ZBTB7A	SEPTIN2	FBXL20	PHKA1	SUPT6H	CHD3	PDCD5	HIRIP3	PID1	BAZ1B	TRIP12	BAZ2A	SF3B2	PRPF4B	PDLIM7	SERBP1	EFR3A	NCBP1	SMG8	ZMYND8	SRRM1	PDS5B	DOCK9	UBE4B	SUGP1	PHACTR1	MOB1B	CROCC	GCFC2	PI4KA	CCDC12	TCP11L1	CLASP2	SRSF10	ILF3	WDR91	CCZ1	R3HDM1	PPP6R3	GARS1	FAM160A2	IQSEC1	SPIRE2	PAPOLG	DDX55	INTS10	SYTL4	ZNF22	H2AX	TASOR	ANP32D	RANBP3	OXSR1	H4C1	NIBAN1	SMAP	WDR55
419 proteins down-regualated at 2h in SARS-CoV-2 infected cells from Bouhaddou et al. 2020	Proteins differentially phosphorylated in 2h SARS-CoV-2-infected vs 0h mock-infected Vero E6 cells from Bouhaddou et al. (2020) The Global Phosphorylation Landscape of SARS-CoV-2 Infection. (Cell, 8/6/2020)	NUP210	PTPN14	RSRC2	RB1	APC	HECTD1	LARP1	EPB41L2	SUN2	MAP7D1	PKP2	LARP4B	MACF1	EPB41L1	AHSG	ABL1	TOR1AIP1	ZC3H18	ELAVL1	RUNX1	BAG3	CIT	ABI1	POLA1	TTN	DNMT1	TP53	MARK3	ZDHHC5	CRK	UBAP2L	MYCBP2	CLCC1	ARHGEF11	MEPCE	NUP214	POLA2	NPM1	PXN	CRTC3	USP15	MARK2	CCDC86	GSK3B	FRMD8	PLEC	PLEKHA5	RPS6KB1	ATXN2	ALB	EIF4B	SRGAP1	AUTS2	SLC4A4	YAP1	PKP4	PTPN13	RICTOR	MARCKS	ZEB1	TJP1	KIAA1671	CEP170	NEDD4L	TAB2	SRRT	TAGLN2	KHSRP	C2CD2L	TMEM184B	STMN1	GSK3A	TBC1D9B	HS1BP3	AKT1	GIGYF1	TBC1D10B	LMNA	ABCC3	PPP1R12C	ZYX	PLK1	TOP2A	ARHGAP31	LMNB1	KIAA0930	ARHGAP29	CTNND1	STARD13	KIF2C	BUB1	ORC1	SMTN	SNAPIN	SLCO4A1	CDCA2	TPX2	ANLN	NCAPH	EPS8	HJURP	MKI67	CDYL	EP400	BCL9L	TONSL	PROSER2	KIAA1522	CEP170B	ARHGEF5	PRICKLE1	PRICKLE2	STIM2	MAP2K3	DGCR8	PTPRU	MEF2A	KIF13B	ZFAND3	ULK1	SMARCA1	EPN1	CHAF1B	NCAPD2	ECT2	PBK	CHAF1A	ADAR	TRAFD1	BMPR2	TNS1	SNRK	POLDIP3	RPS10	VIM	SP3	TNS3	FNDC3B	RBM7	PHLDB2	SUB1	NUCKS1	GEM	DGKQ	GFAP	TNFAIP3	LCE3D	TP53I11	PPFIA3	BRD1	SOWAHC	ACIN1	GPKOW	PPP1R18	BCOR	TOMM34	NELFE	TMPO	ANKRD39	SLC25A46	PLEKHH2	NUFIP2	ID2	CLIP2	PHYHIPL	CSRP1	CDCA7	EMD	SFSWAP	ABL2	ZC3HAV1	PIKFYVE	RGS10	DYNC1LI1	AJUBA	KATNA1	MAP1S	MTCL1	PSIP1	SLC20A1	NHS	HAUS6	LMNB2	SPAG9	BBX	CNNM3	KPNA6	REEP4	TWISTNB	HERC1	BOD1L1	PNISR	THOC2	THRAP3	SRRM2	LIMA1	AFF4	BAZ1A	RHBDF2	OPTN	SEC61B	KHDRBS1	AKAP11	NONO	ADD3	SOBP	STK17A	ETV3	PUM1	RANBP2	CAMSAP1	KDM1A	MAP3K7	TOM1	ARAF	NUP153	LSM14A	SEC16A	SPP1	PPHLN1	AHNAK	ALKBH5	ASAP1	USP36	EML4	WDR44	NSRP1	U2SURP	DNTTIP2	C2CD4C	GOLGA4	ARID1B	AKAP13	PHLDB1	SYNM	BAIAP2	NCOR2	PRRT3	KLC4	SMAP2	MYO9B	CC2D1B	RAPGEF1	LUZP1	MDC1	KANK2	SRCAP	CTPS1	MICAL3	SLC9A1	FLNC	TSSC4	PPP1R12A	AGFG1	MTUS1	ARID1A	SEMA6A	NCOR1	NCOA2	KMT2A	JMJD1C	MAST2	RALGAPA2	DCLK1	NF1	RUNX1T1	EHMT2	PCM1	TNFRSF10B	AMBRA1	WDFY3	TP53BP1	DCAF1	MAPKAP1	ERBIN	EEF2K	MAPK9	CNOT2	RFC1	RANBP10	ANKLE2	SCAF11	GBF1	CIAPIN1	AKR7L	NCOA1	SYNPO	MUS81	KAT7	AFDN	PPP2R5D	CCDC88A	ABI2	MTDH	REPS1	ANAPC1	SUDS3	ZC3HC1	TCOF1	RRP1B	PMS2	NOLC1	CDK12	IREB2	ARHGEF2	ADGRG6	MSL3	EIF4ENIF1	ATXN2L	MGA	RUSC2	EPS15L1	KDM2A	RPA1	LIG3	CPD	CCDC6	DENND4C	APBB2	ANK2	PHRF1	HCFC1	TBC1D4	WDR20	CAMSAP2	RBM15	PHACTR2	RAD54L2	CDK13	CLIP1	UCKL1	PDLIM4	C16ORF72	ZNF609	NEK1	PCF11	PALLD	H1-2	H1-3	FAM53A	H1-4	SEPTIN9	ATL3	LNPK	DOCK7	KMT2D	ZC3H13	HIRIP3	HNRNPU	DBNL	BAZ1B	TRIP12	XRN2	TCF20	PLEKHA2	ZFC3H1	SIN3A	RASSF8	MICALL1	DPYSL5	DCDC2	FMNL3	CXADR	OSBPL11	LARP4	DMWD	FRMD4A	SNAP23	SRRM1	CHAMP1	ARHGAP39	SCAMP3	DBN1	STRIP1	CHTOP	NELFA	POM121	STK11IP	ITPRID2	FAM53C	WIZ	PANK2	JPT2	KLC2	KRI1	PI4KA	GPRIN1	BAG4	HABP4	WDR47	ZNF638	ZNHIT2	JCAD	SHROOM2	WDR91	FAM122A	MIDEAS	POM121C	MVB12B	GRIP1	OSBPL3	PAK2	RIF1	SNTB2	SURF6	AKTIP	TBC1D1	CLASP1	DVL3	RSL1D1	LRCH3	CRYBG1	SLAIN2	CDC23	RANBP3	CBARP	CBX8	LCE3E	BAP18
262 proteins up-regualated at 4h in SARS-CoV-2 infected cells from Bouhaddou et al. 2020	Proteins differentially phosphorylated in 4h SARS-CoV-2-infected vs 0h mock-infected Vero E6 cells from Bouhaddou et al. (2020) The Global Phosphorylation Landscape of SARS-CoV-2 Infection. (Cell, 8/6/2020)	NUP210	HDAC2	ATP13A3	HSP90AB1	MACF1	MIB1	SLC26A6	RNF2	RETREG3	PKM	ING5	BRAF	STOML2	SNIP1	DNMT1	NUP214	RCC1	NPM1	PPIA	PLEC	PLEKHA5	TLN1	SAC3D1	RAI14	CYBRD1	FNBP1L	TJP1	KIAA1143	C2CD2L	CD2BP2	USF1	ZNF316	LEMD2	NUMA1	MBD1	RETREG2	TKT	WDR13	TOP2A	EZH2	SAP30	SLC16A1	KIAA0930	LGALS1	STARD13	EIF4G1	SORT1	NCAPG	ZNF830	AKAP12	IWS1	CTNNA1	STK4	CDYL	STK3	ABCF1	ACTB	HMGA1	WWC1	PYGO2	HERC2	HNRNPK	CTR9	RGS3	SAFB	PSMA3	OGFR	BRIP1	IFI16	TIMELESS	DPYSL2	RPS28	HNRNPUL1	MATR3	PDCD4	SAP30L	RNPS1	TNS3	CFDP1	PDCL3	NUCKS1	MYO18A	VCL	PGRMC1	RBM8A	BRD1	ACIN1	TAF12	DDX18	TFPT	HDAC1	DKC1	SSB	SKP1	LEO1	USO1	CWC22	MFAP1	VGF	ZDHHC23	HIST2H2AA3	MAP1B	SRSF6	CDH6	SLIRP	TRA2B	MSI1	MCM4	MCM7	WDHD1	LMNB2	HNRNPA2B1	RPL22L1	UTP20	KIF1A	EIF5B	BOP1	THRAP3	RSF1	SRRM2	RBM34	RCAN1	RHBDF2	SH3KBP1	PYGL	SF3B1	HNRNPA1	PUM2	DPYSL3	RANBP2	EIF2AK4	SPEN	ARRB1	TXNL1	SAE1	PRPF6	USP39	TNFAIP1	STK10	SEC16A	C9ORF78	ERCC5	FIP1L1	DDX54	HNRNPUL2	SUV39H2	CEBPZ	AKAP10	CPSF3	ZMYM2	RALY	SYNE2	MADD	NOP56	MDC1	CTPS1	XPC	KAT5	RRP7A	EDC3	NAP1L4	PTK7	IGF2R	RREB1	ELAC2	SSRP1	USP28	RALGAPA2	TNKS1BP1	RRAS2	SUZ12	SMC4	LRWD1	HSF1	ATG2B	TP53BP1	UBR5	PRKDC	HUWE1	PSMF1	SLC4A1AP	GTPBP1	UBXN7	GBF1	PPM1B	PHF6	PEA15	RBM17	BCLAF1	CCNH	POLR3E	PPIL4	MYBBP1A	BYSL	CD2AP	CDK12	WDR70	VIRMA	DPF2	DDX24	SPIRE1	KDM2A	ARHGEF28	PACSIN3	RBM15	CDK13	GPATCH8	PCF11	BCKDHA	ZBTB7A	H1-5	SEPTIN2	USP20	PHKA1	SUPT6H	CHD3	PDCD5	HIRIP3	PID1	BAZ1B	TRIP12	BAZ2A	DDX23	SF3B2	PRPF4B	EFR3A	NUP35	ZMYND8	SRRM1	ARHGEF40	ESYT2	COIL	PDS5B	RNASEH1	FBXO28	UBAC1	STK11IP	WIZ	SUGP1	BIVM	CCDC12	ILF3	R3HDM1	PPP6R3	GARS1	FAM160A2	DNTTIP1	ZFYVE19	WASHC2A	WASHC2C	DDX55	SYTL4	SCARF2	KDM2B	KRIT1	ANP32D	RANBP3	OXSR1	NIBAN1	WDR55	MTMR1	TBC1D14
197 proteins down-regualated at 4h in SARS-CoV-2 infected cells from Bouhaddou et al. 2020	Proteins differentially phosphorylated in 4h SARS-CoV-2-infected vs 0h mock-infected Vero E6 cells from Bouhaddou et al. (2020) The Global Phosphorylation Landscape of SARS-CoV-2 Infection. (Cell, 8/6/2020)	RSRC2	APC	LARP1	SQSTM1	EPB41L2	NEK9	MAP7D1	LARP4B	MACF1	AHSG	ELAVL1	BAG3	CIT	MYCBP2	NPM1	PRKAR2B	NUP98	CCDC86	GSK3B	PLEKHA5	ARHGEF12	SGTA	AUTS2	YAP1	PKP4	ZEB1	CEP170	NEDD4L	SRRT	TAGLN2	STMN1	TBC1D9B	HS1BP3	LMNA	ZYX	TOP2A	CTNND1	BUB1	SMTN	SLCO4A1	TPX2	ANLN	EPS8	HJURP	MKI67	AKAP12	CDKN1A	ZFP36L1	ABCC5	EP400	MEF2A	ZFAND3	PLEKHG3	ULK1	CHAF1B	NCAPD2	PBK	AAK1	TRAFD1	BMPR2	TNS1	JUNB	VIM	TNS3	FNDC3B	RPS3	SUB1	NUCKS1	TNFAIP3	NPDC1	PPFIA3	MAPRE3	BRD1	ACIN1	PIH1D1	TMPO	ANKRD39	MAP1B	ID2	CLIP2	SRSF6	CDCA7	EMD	ZC3HAV1	RGS10	KATNA1	DCP1B	PSIP1	SLC20A1	HAUS6	HERC1	THRAP3	SRRM2	BAZ1A	RHBDF2	OPTN	AKAP11	SON	SOBP	PUM1	RANBP2	CAMSAP1	MAP3K7	NUP153	SEC16A	SPP1	AHNAK	ARID1B	PHLDB1	NCOR2	PRRT3	KLC4	SMAP2	LUZP1	FLNC	UCK2	NAP1L4	MTUS1	NCOR1	JMJD1C	EHMT2	PCM1	ZBTB21	MIA3	PRR5	DCAF1	CNOT2	ANKLE2	AKR7L	NCOA1	SYNPO	RBM17	AFDN	MTDH	BCLAF1	REPS1	ANAPC1	RECQL4	TCOF1	PMS2	NOLC1	IREB2	EIF4ENIF1	ATXN2L	MGA	PFKFB2	TMEM131	DENND4C	AEBP2	PHRF1	HCFC1	TBC1D4	PDZD8	UCKL1	DOCK5	ATL3	LNPK	DOCK7	DBNL	HDGFL2	OSBPL11	LARP4	FRMD4A	NUP35	SNAP23	SRRM1	NKTR	CHAMP1	PHF3	DBN1	STRIP1	STK11IP	ITPRID2	WIZ	JPT2	KLC2	SGTB	PI4KA	SYNC	BAG4	CLASP2	JCAD	SHROOM2	WDR91	DEPDC5	FAM122A	YEATS2	MVB12B	RIF1	CLASP1	RSL1D1	LRCH3	CRYBG1	SLAIN2	CDC23	CBX8	RELCH
300 proteins up-regualated at 8h in SARS-CoV-2 infected cells from Bouhaddou et al. 2020	Proteins differentially phosphorylated in 8h SARS-CoV-2-infected vs 0h mock-infected Vero E6 cells from Bouhaddou et al. (2020) The Global Phosphorylation Landscape of SARS-CoV-2 Infection. (Cell, 8/6/2020)	MYH9	MPHOSPH10	HDAC2	ATP13A3	HSP90AB1	HECTD1	LARP1	SQSTM1	LARP4B	MACF1	SLC26A6	RNF2	EZR	TOR1AIP1	RETREG3	PKM	ING5	BRAF	HSPB1	LARP7	FRMD6	SNIP1	PLCB3	DNMT1	NUP214	RCC1	NPM1	PPIG	NUP98	MAP3K1	PPIA	PLEC	CHD1	SPTBN1	PLEKHA5	EI24	TLN1	SAC3D1	RAI14	CYBRD1	FNBP1L	TJP1	KIAA1143	CD2BP2	USF1	DDX41	ZNF316	NUMA1	RETREG2	TKT	WDR13	SYNGR2	TOP2A	EZH2	SAP30	SLC16A1	KIAA0930	FKBP5	STARD13	CDK1	EIF4G1	KIF23	SORT1	RAPH1	NCAPG	ZNF830	AKAP12	IWS1	CTNNA1	STK4	CDYL	STK3	MAVS	ABCF1	HMGA1	HEATR6	SLC4A2	HERC2	HNRNPK	CTR9	SAFB	PSMA3	RERE	SCAF1	OGFR	FAM83D	IFI16	TIMELESS	PML	DPYSL2	RPS28	EEF2	RBBP7	ALDH1A1	MYH10	HNRNPUL1	MATR3	SAP30L	VPS35	PDCL3	NUCKS1	MYO18A	VCL	PGRMC1	RBM8A	SLC18A3	BRD1	ACIN1	TAF12	DDX18	TFPT	CDC26	PPP1R18	HDAC1	DKC1	PCBD1	PTDSS1	SSB	SKP1	BZW1	TMPO	LEO1	USO1	RPL29	CWC22	MFAP1	VGF	MAP1B	SURF2	SETD2	CDH6	SLIRP	MSI1	LBR	MTCL1	MCM4	MCM7	WDHD1	HNRNPA2B1	RPL22L1	UTP20	KIF1A	EIF5B	BOP1	BOD1L1	THRAP3	RSF1	SRRM2	RBM34	MVB12A	PYGL	PUM2	HIST2H2BF	DPYSL3	RANBP2	OSTF1	EIF2AK4	ARRB1	TXNL1	SAE1	PRPF6	USP39	TNFAIP1	STK10	C9ORF78	CDC42BPB	CCZ1B	STK25	ERCC5	ASAP1	IRF2BP1	SUV39H2	LIN37	KTN1	NT5C2	CEBPZ	PTPN12	CPSF3	ZMYM2	RALY	EEPD1	SYNE2	STK24	MADD	NOP56	MDC1	XPC	KAT5	RRP7A	PSMD2	NAP1L4	PTK7	IGF2R	SRF	RREB1	ELAC2	SSRP1	USP28	RALGAPA2	TNKS1BP1	RRAS2	SUZ12	ZBTB21	LRWD1	HSF1	ATG2B	TP53BP1	PRKDC	RABGAP1	HUWE1	SLC4A1AP	GTPBP1	SCAF11	UBXN7	GBF1	PPM1B	PHF6	POU2F1	MAP3K2	PEA15	RRBP1	RBM17	GPSM1	BCLAF1	CCNH	POLR3E	PPIL4	MYBBP1A	BYSL	MLLT1	CDK12	WDR70	VIRMA	GTF3C4	DPF2	GAPVD1	DDX24	SPIRE1	KDM2A	ARHGEF28	PACSIN3	AEBP2	OSBPL10	RBM15	CDK13	C1ORF52	GPATCH8	PCF11	TJAP1	RBM10	NMD3	BCKDHA	ZBTB7A	FRA10AC1	H2BC11	SEPTIN2	SUPT6H	CHD3	PDCD5	HIRIP3	PID1	BAZ1B	TRIP12	SF3B2	PRPF4B	PRR14	EFR3A	ZMYND8	SRRM1	NKTR	SORBS1	DSN1	PDS5B	RNASEH1	FBXO28	RAD50	UBAC1	WIZ	SUGP1	BIVM	YLPM1	CCDC12	ILF3	CCZ1	PPP6R3	GARS1	DNTTIP1	SPIRE2	CLASP1	DDX55	RSL1D1	KDM2B	ANP32D	RANBP3	OXSR1	NIBAN1	SMAP	WDR55	TBC1D14	FGFR1OP
347 proteins down-regualated at 8h in SARS-CoV-2 infected cells from Bouhaddou et al. 2020	Proteins differentially phosphorylated in 8h SARS-CoV-2-infected vs 0h mock-infected Vero E6 cells from Bouhaddou et al. (2020) The Global Phosphorylation Landscape of SARS-CoV-2 Infection. (Cell, 8/6/2020)	PTPN14	RBL1	STAT3	APC	HECTD1	LARP1	EPB41L2	NEK9	MAP7D1	PKP2	LARP4B	RBL2	AHSG	ABL1	ZC3H18	ELAVL1	RUNX1	BAG3	CIT	TP53	ZDHHC5	CRK	MYCBP2	MEPCE	CRTC3	USP15	MARK2	CCDC86	GSK3B	FRMD8	PLEC	CHD1	PLEKHA5	RPS6KB1	ARHGEF12	ALB	SGTA	EIF4B	AUTS2	SLC4A4	YAP1	SH3RF1	PKP4	PTPN13	KIAA1217	MARCKS	ZEB1	ABLIM1	CEP170	ARID5B	NEDD4L	SRRT	C2CD2L	RIPOR1	STMN1	TBC1D9B	HS1BP3	GIGYF1	CAD	LMNA	ZYX	PLK1	TOP2A	ARHGAP31	BUB1	CDC6	SMTN	TPX2	ANLN	NCAPH	UNC13B	HJURP	MKI67	DTL	MLF1	FAM83H	CDKN1A	MYC	ZFP36L1	CDYL	EP400	MITF	HMGA1	PROSER2	CEP170B	EEF1D	PRICKLE1	PRICKLE2	BIN1	PTPRU	MEF2A	CCDC9	ZFAND3	PLEKHG3	ULK1	AKT1S1	CHAF1B	NCAPD2	PBK	ARHGEF39	MASTL	TRAFD1	BMPR2	TNS1	JUNB	LIMCH1	PPP1R14A	VIM	CD97	ERRFI1	TNS3	FNDC3B	PHLDB2	NUCKS1	GEM	SCML2	TNFAIP3	FILIP1L	PPFIA3	FOXK1	MAPRE3	BRD1	IRF2BPL	ACIN1	MBD4	NUP107	PTBP3	CUL4B	ARGLU1	NUFIP2	SAMD4A	ID2	CLIP2	ATAD2	ABL2	ZC3HAV1	RGS10	DYNC1LI1	MAP1S	MTCL1	PSIP1	SLC20A1	HAUS6	KIF3B	CNNM3	REEP4	TWISTNB	HERC1	PNISR	THRAP3	SRRM2	BAZ1A	RHBDF2	OPTN	KHDRBS1	AKAP11	NONO	SON	ADD3	SOBP	ETV3	PUM1	TERF2IP	RANBP2	UBE2J1	CAMSAP1	MAP3K7	NUP153	SEC16A	SPP1	PPHLN1	AHNAK	CDC42SE1	MFF	MTA2	EML4	DNTTIP2	AKAP10	ZMYM2	ARID1B	AKAP13	PHLDB1	SYNM	NCOR2	PRRT3	NBN	SMAP2	MYO9B	LUZP1	VPS13D	KANK2	NCAPH2	MICAL3	RAF1	ABR	TSSC4	UCK2	DDX42	NAP1L4	MTUS1	HDAC4	ARHGAP5	ARID1A	SEMA6A	NCOR1	MAGI3	RALGAPA2	DCLK1	EHMT2	TSC2	PCM1	MIA3	AMBRA1	DCAF1	ERBIN	PRKDC	CNOT2	PCYT1B	ANKLE2	RALGAPB	PARP4	NCOA1	SYNPO	RBM17	AFDN	CCDC88A	BCLAF1	MGMT	REPS1	ANAPC1	ZC3HC1	TCOF1	RRP1B	PMS2	NOLC1	CDK12	ARHGEF2	MAGED2	SLC4A7	EIF4ENIF1	ATXN2L	MED1	MGA	RASAL2	WAC	EPS15L1	GPATCH2L	GPS1	RPA1	PFKFB2	CPD	TMEM131	CCDC6	DENND4C	PHRF1	HCFC1	OSBPL10	TBC1D4	NCBP3	CAMSAP2	RBM15	CDK13	SLTM	UCKL1	CCDC61	ZNF609	NEK1	PCF11	HNRNPA3	CDK14	H1-2	CBY1	RIPOR3	H1-3	FAM53A	ATL3	LNPK	DOCK7	EIF4G3	ZHX3	MPRIP	ZC3H13	HNRNPU	DBNL	BAZ1B	TRIP12	RBM25	TCF20	SF3B2	PRPF4B	ZFC3H1	RASSF8	MICALL1	FMNL3	HDGFL2	OSBPL11	LARP4	FRMD4A	GAB1	SNAP23	SRRM1	NKTR	ZNF622	SCAMP3	DBN1	STRIP1	STK11IP	ITPRID2	FAM53C	WIZ	PANK2	JPT2	SRBD1	FAM76B	KLC2	SGTB	PI4KA	GPRIN1	ELFN2	BAG4	HABP4	CLASP2	ZNHIT2	JCAD	SHROOM2	WDR91	BUD13	FAM122A	YEATS2	URI1	MVB12B	FAM160A2	PAK2	RIF1	PLEKHG4	TBC1D1	MAP7D3	CCDC8	DLG5	CSDC2	CRYBG1	SLAIN2	CDC23	CBX8	TASOR2	RELCH	ATRIP
355 proteins up-regualated at 12h in SARS-CoV-2 infected cells from Bouhaddou et al. 2020	Proteins differentially phosphorylated in 12h SARS-CoV-2-infected vs 0h mock-infected Vero E6 cells from Bouhaddou et al. (2020) The Global Phosphorylation Landscape of SARS-CoV-2 Infection. (Cell, 8/6/2020)	MYH9	MPHOSPH10	HDAC2	ATP13A3	HSP90AB1	HECTD1	SPTAN1	PRKACA	RRP9	MACF1	EPB41L1	RNF2	RETREG3	PKM	ANXA2	LAP3	HSPB1	LARP7	FRMD6	SNIP1	FBL	DNMT1	TRIM28	NUP214	RCC1	NPM1	PRKAR2B	PPIG	HERPUD2	MAP3K1	PPIA	PLEC	CHD1	PTK2	PLEKHA5	ERC1	TLN1	SAC3D1	SLC4A4	COBLL1	PKP4	RALGPS2	CYBRD1	FNBP1L	TJP1	KIAA1143	RPLP1	CD2BP2	SYMPK	USF1	DDX41	ZNF316	NUMA1	AKT1	RETREG2	LMNA	TKT	WDR13	SYNGR2	PLK1	TOP2A	EZH2	SAP30	SLC16A1	KIAA0930	FKBP5	CDK1	EIF4G1	GAPDH	CLTA	KIF23	ARHGAP23	RAPH1	AKAP12	IWS1	CTNNA1	STK4	STK3	ABCF1	HMGA1	SRSF1	HEATR6	MAP2K3	HERC2	HNRNPK	ELF4	SAFB	PSMA3	PRKACG	PACS1	SCAF1	OGFR	FAM83D	IFI16	TIMELESS	DPYSL2	RPS28	EEF2	PCBP1	ALDH1A1	HNRNPUL1	MATR3	PDCD4	SRP14	SAP30L	RNPS1	PRPSAP1	FASN	PDCL3	ATP2B1	NUCKS1	MYO18A	VCL	PGRMC1	RBM8A	FOXK1	BRD1	BABAM1	ACIN1	TAF12	DDX18	TFPT	STK39	CDC26	PPP1R18	UCHL3	MBD4	HDAC1	DKC1	PCBD1	SSB	SKP1	BZW1	TMPO	LEO1	RPL29	DDB2	MFAP1	VGF	ZDHHC23	MAP1B	SURF2	SETD2	KDM3B	CLIP2	CDH6	SLIRP	TRA2B	MSI1	MCM4	MCM7	DHX16	MAD1L1	ALYREF	LMNB2	LIG1	SP100	HNRNPA2B1	BCL10	RPL22L1	NIPBL	UTP20	KIF1A	EIF5B	ATRX	BOP1	REEP4	PRKACB	BOD1L1	PNISR	THRAP3	RSF1	SRRM2	RBM34	RCAN1	VAT1	ANP32B	RHBDF2	N4BP1	SH3KBP1	MVB12A	ALDOA	PYGL	RNH1	HNRNPA1	PUM2	HIST2H2BF	DPYSL3	PSMD11	RANBP2	OSTF1	EIF2AK4	SPEN	ARRB1	TXNL1	SAE1	PRPF6	USP39	ZMYM4	TNFAIP1	STK10	SEC16A	PPHLN1	C9ORF78	AHNAK	ACAT1	CCZ1B	STK25	ERCC5	FIP1L1	DDX54	ASAP1	IRF2BP1	HNRNPUL2	SUV39H2	RBBP6	CEBPZ	AKAP10	ZMYM2	RALY	SYNE2	STK24	MADD	NOP56	MDC1	XPC	NOL8	ABLIM3	RRP7A	PSMD2	NAP1L4	XRCC6	PTK7	IGF2R	SRF	RREB1	ELAC2	SSRP1	CCAR2	USP28	MAST2	TNKS1BP1	DCLK1	RRAS2	SUZ12	SMC4	PCM1	ZBTB21	LRWD1	HSF1	ATG2B	TP53BP1	DCAF1	PRKDC	UBR4	HUWE1	SLC4A1AP	UBXN7	GBF1	PPM1B	PHF6	POU2F1	ACSS2	MAP3K2	PEA15	RBM17	MCM3	BCLAF1	CCNH	POLR3E	PPIL4	RECQL4	BYSL	CD2AP	CDK12	WDR70	VIRMA	HSPA9	ARHGEF2	DPF2	DDX24	SPIRE1	ARHGEF28	PACSIN3	CARHSP1	PHIP	RBM15	CDK13	C1ORF52	GPATCH8	RBM10	NMD3	BCKDHA	ZBTB7A	H2BC11	SEPTIN2	DOCK7	USP20	PHKA1	SUPT6H	CHD3	ZC3H13	PDCD5	HIRIP3	PID1	BAZ1B	TRIP12	SF3B2	PRPF4B	SIN3A	CHD9	EFR3A	NUP35	SMG8	ZMYND8	SRRM1	ARHGEF40	ESYT2	PDS5B	RNASEH1	RAD50	UBAC1	UBE4B	STK11IP	WIZ	SUGP1	BIVM	ATN1	CROCC	YLPM1	CCDC12	RBMX2	PKN2	SRSF10	CCZ1	POP1	R3HDM1	PPP6R3	TIMM8A	ARMCX4	SPIRE2	ZFYVE19	WASHC2A	WASHC2C	DDX55	ZNF22	KDM2B	KRIT1	ANP32D	RANBP3	OXSR1	H4C1	NIBAN1	WDR55	TBC1D14
404 proteins down-regualated at 12h in SARS-CoV-2 infected cells from Bouhaddou et al. 2020	Proteins differentially phosphorylated in 12h SARS-CoV-2-infected vs 0h mock-infected Vero E6 cells from Bouhaddou et al. (2020) The Global Phosphorylation Landscape of SARS-CoV-2 Infection. (Cell, 8/6/2020)	PTPN14	UHRF1	RB1	RBL1	STAT3	APC	HECTD1	LARP1	EPB41L2	NEK9	MAP7D1	LARP4B	MACF1	RBL2	AHSG	ABL1	ZC3H18	ELAVL1	BRAF	CENPF	RUNX1	BAG3	CIT	ABI1	BRD2	MARK3	CRK	UBAP2L	MYCBP2	CLCC1	MEPCE	POLA2	CRTC3	USP15	MARK2	CCDC86	GSK3B	FRMD8	PLEC	PLEKHA5	RPS6KB1	ARHGEF12	SGTA	EIF4B	SRGAP1	AUTS2	SLC4A4	YAP1	SH3RF1	COBLL1	PKP4	KIAA1217	MARCKS	RPL24	ZEB1	CEP170	ARID5B	NEDD4L	SRRT	TAGLN2	C2CD2L	TMEM184B	LSP1	RIPOR1	STMN1	TBC1D9B	HS1BP3	NUMA1	CAD	LMNA	ZYX	PLK1	TOP2A	ARHGAP31	LMNB1	ARHGAP29	BUB1	CDC6	SMTN	SLCO4A1	TPX2	ANLN	NCAPH	CDC20	UNC13B	HJURP	MKI67	DTL	MLF1	AKAP12	LLGL2	FAM83H	CDKN1A	MYC	ZFP36L1	CDYL	EP400	MITF	BCL9L	CEP170B	ZNF687	MAP2K3	BIN1	PTPRU	MEF2A	CCDC9	KMT2B	KIF13B	ZFAND3	PLEKHG3	ULK1	SMARCA1	AKT1S1	CHAF1B	NCAPD2	PBK	ARHGEF39	MASTL	PHF11	ADAR	TRAFD1	TNS1	SNRK	PPP1CB	PCBP1	JUNB	PPP1R14A	VIM	CD97	ERRFI1	TNS3	FNDC3B	RBM7	PHLDB2	NUCKS1	GEM	SCML2	TNFAIP3	LCE3D	FILIP1L	PPFIA3	FOXK1	BRD1	FLRT3	IRF2BPL	ACIN1	GPKOW	RNASEH2A	MBD4	NELFE	TMPO	NUP107	RRN3	PLEKHH2	NUFIP2	SAMD4A	ID2	CLIP2	ATAD2	CDCA7	ABL2	ZC3HAV1	RGS10	DYNC1LI1	KATNA1	MAP1S	PSIP1	MCM4	SLC20A1	ALYREF	HAUS6	LMNB2	KIF3B	CNNM3	REEP4	HERC1	PNISR	THOC2	THRAP3	SRRM2	LIMA1	CDK17	BAZ1A	PATL1	RHBDF2	OPTN	KHDRBS1	NONO	SON	ADD3	NAV1	SOBP	PDLIM2	STK17A	ETV3	PUM1	TERF2IP	RANBP2	CAMSAP1	NUP153	SEC16A	SPP1	UVRAG	PPHLN1	AHNAK	CDC42SE1	MFF	MCM9	PHC3	MTA2	EML4	DNTTIP2	MTA3	AKAP10	PTPN12	ZMYM2	HTT	ARID1B	AKAP13	PHLDB1	SYNM	BAIAP2	NCOR2	PRRT3	KLC4	NBN	SMAP2	TANC1	PRDM2	MYO9B	RAPGEF1	LUZP1	KANK2	MICAL3	RAF1	ABR	FLNC	TSSC4	UCK2	DDX42	NAP1L4	MTUS1	HDAC4	ARHGAP5	ARID1A	NCOR1	NCOA2	PARD3	JMJD1C	RALGAPA2	NF1	EHMT2	TSC2	PCM1	ZBTB21	AMBRA1	PRR5	TP53BP1	DCAF1	SPHK2	UBR4	CNOT2	RFC1	ANKLE2	SCAF11	RALGAPB	PARP4	NCOA1	SYNPO	RBM17	AFDN	ABI2	MTDH	MGMT	REPS1	ANAPC1	ZC3HC1	TCOF1	RRP1B	PMS2	NOLC1	CDK12	MAGED2	SLC4A7	EIF4ENIF1	ATXN2L	MGA	RASAL2	EPS15L1	RPA1	AFAP1	PFKFB2	CPD	TMEM131	DENND4C	CLDN12	PHRF1	HCFC1	OSBPL10	TBC1D4	NCBP3	C1ORF131	CAMSAP2	RBM15	PHACTR2	CDK13	CLIP1	UCKL1	CCDC61	ZNF609	NEK1	PCF11	MORC2	PALLD	DOCK5	HNRNPA3	CDK14	H1-2	FAM53A	SEPTIN9	ATL3	LNPK	DOCK7	KMT2D	ZHX3	MPRIP	ZC3H13	HNRNPU	DBNL	BAZ1B	TRIP12	RBM25	TCF20	PRPF4B	ZFC3H1	RASSF8	IRF2BP2	MICALL1	DPYSL5	FMNL3	HDGFL2	CXADR	OSBPL11	LARP4	FRMD4A	SNAP23	SRRM1	NKTR	SORBS1	ZNF622	CHAMP1	ARHGAP39	SCAMP3	DBN1	STRIP1	CHTOP	STK11IP	ITPRID2	FAM53C	WIZ	PANK2	JPT2	SRBD1	REEP3	KLC2	SGTB	ELFN2	BAG4	HABP4	ZNF638	CLASP2	ZNHIT2	JCAD	SHROOM2	WDR91	BUD13	YRDC	FAM122A	PPP1R35	YEATS2	FBXO42	MVB12B	PAK2	RIF1	SURF6	PLEKHG4	TBC1D1	WWC2	CLASP1	MAP7D3	CCDC8	DLG5	RSL1D1	LRCH3	CSDC2	CRYBG1	SLAIN2	CDC23	RANBP3	CBX8	ESS2	LCE3E	TASOR2	ATRIP
541 proteins up-regualated at 24h in SARS-CoV-2 infected cells from Bouhaddou et al. 2020	Proteins differentially phosphorylated in 24h SARS-CoV-2-infected vs 0h mock-infected Vero E6 cells from Bouhaddou et al. (2020) The Global Phosphorylation Landscape of SARS-CoV-2 Infection. (Cell, 8/6/2020)	MYH9	PTPN14	MPHOSPH10	HDAC2	ATP13A3	HSP90AB1	APC	HECTD1	LARP1	SQSTM1	SPTAN1	PRKACA	ITGB1	RRP9	MACF1	MIB1	EPB41L1	TOR1AIP1	PFKL	RETREG3	PKM	ANXA2	ING5	BRAF	HSPB1	LARP7	MAPK14	FRMD6	SNIP1	GIGYF2	DNMT1	STAT1	MEPCE	TRIM28	NUP214	RCC1	NPM1	PPIG	NUP98	ZNF318	PRKAR2A	EGFR	GOLGB1	PPIA	PLEC	CHD1	SPTBN1	PLEKHA5	NAP1L1	SLC7A6OS	TLN1	SF1	SAC3D1	CAV1	RPS20	MNAT1	NCOA5	EIF4B	RPS17	PARD6B	SLC4A4	RAI14	PATJ	COBLL1	PKP4	RPL24	CYBRD1	FNBP1L	TJP1	KIAA1671	KIAA1143	ZC3HAV1L	RPLP1	SRRT	KHSRP	CD2BP2	SYMPK	RMDN3	USF1	ZNF316	TBC1D9B	LEMD2	NUMA1	RETREG2	LMNA	TKT	ACLY	SYNGR2	TOP2A	EZH2	SAP30	CYFIP1	SLC16A1	KCTD3	KIAA0930	ARHGAP29	FKBP5	STARD13	ITSN1	SH2D4A	EIF4G1	GAPDH	NME1	ARHGAP23	MKI67	SORT1	NCAPG	ABCB1	MIB2	TNRC6C	AKAP12	IWS1	CTNNA1	STK4	CDYL	STK3	ABCF1	HMGA1	BCL9L	USP32	KIAA1522	BCAS3	LSR	HEATR6	ITPR3	SLC4A2	WDR37	MAP2K3	HNRNPH1	ARHGAP1	HNRNPH2	HERC2	PNN	HNRNPK	CTR9	SAFB	PSMA3	PRKACG	PACS1	RERE	RGL2	SCAF1	OGFR	LRCH4	INCENP	TIMELESS	DPYSL2	BMPR2	TUBA1B	HMGN1	MYL12B	EEF2	MYL12A	PCBP1	RBMS1	SPECC1L	LIMCH1	ALDH1A1	MYH10	NME2	PSMB5	HNRNPUL1	MATR3	CCT4	VIM	PDCD4	DDX17	RNPS1	TNS3	PRPSAP1	FASN	CFDP1	VPS35	RBM7	SRSF3	PDCL3	ZFP91	CDK11A	NUCKS1	MYO18A	VCL	PGRMC1	PGLS	RBM8A	CBX3	SLC18A3	FOXK1	BRD1	BABAM1	ACIN1	WDR77	TMX1	TAF12	DDX18	TFPT	CDC26	PPP1R18	HDAC1	DKC1	PCBD1	SSB	NELFE	SKP1	RPS6KA3	BZW1	AKR1B1	LEO1	USO1	RPL29	WBP11	MFAP1	RHPN2	VGF	ZDHHC23	MAP1B	SURF2	SETD2	KDM3B	HDGF	MTFR1L	CLIP2	CDH6	CTDP1	SLIRP	TRA2B	TRIM5	RASL11A	MAP1S	MSI1	MTCL1	MCM4	WDHD1	LIG1	HNRNPA2B1	BCL10	NIPBL	UTP20	KIF1A	EIF5B	PPP1R9A	ATRX	BOP1	REEP4	PRKACB	GFPT1	BOD1L1	PPP1R10	THRAP3	RSF1	SRRM2	RBM34	RCAN1	ANP32B	RHBDF2	N4BP1	SH3KBP1	MVB12A	PYGL	MYL9	HNRNPA1	SON	PUM2	NEK6	DPYSL3	RUBCN	PSMD11	RANBP2	OSTF1	USP14	EIF2AK4	CREB1	MDM4	DPP9	NFKB2	ARRB1	TXNL1	TOM1	DFFA	SAE1	PRPF6	USP39	TNFAIP1	STK10	SZRD1	C9ORF78	CDC42BPB	CCZ1B	STK25	MPST	ERCC5	MFF	FIP1L1	DDX54	SUV39H2	MPHOSPH8	AHCTF1	KTN1	RBBP6	CEBPZ	STT3B	AKAP10	PTPN12	CPSF3	ZMYM2	RALY	EEPD1	AKAP13	SYNE2	PHLDB1	POLR2A	STK24	HNRNPC	MADD	RRP1	ARHGEF7	ZSCAN18	NOP56	LUZP1	MDC1	TTC7A	KANK2	SRCAP	MICAL3	DST	XPC	ABLIM3	KAT5	FLNC	CTTN	DDX42	PPP1R12A	PSMD2	NAP1L4	XRCC6	PBRM1	ITGA3	HNF1B	ADD1	PTK7	IGF2R	SRF	RREB1	ELAC2	SSRP1	CCAR2	TRIM24	MAST2	RALGAPA2	TNKS1BP1	DCLK1	RING1	RRAS2	SUZ12	SMC4	TRA2A	ZBTB21	LRWD1	HSF1	RACK1	ATG2B	TP53BP1	DCAF1	UBR5	UBR4	RABGAP1	BCL2L13	TUBGCP5	HUWE1	PSMF1	GIT2	TBC1D15	SLC4A1AP	UBXN7	GBF1	RANBP1	PPM1B	AKR7L	PHF6	ACSS2	MAP3K2	PEA15	FUBP1	LIMK1	RBM17	NSD3	CDK11B	BCLAF1	CCNH	POLR3E	CPSF2	SUDS3	PPIL4	RECQL4	BYSL	CD2AP	MAP2K4	CDK12	WDR70	VIRMA	HSPA9	MAP2K2	MAP2K7	ARHGEF2	OXR1	NSFL1C	FLNB	POGZ	GTF3C4	DPF2	MED1	DDX24	BRPF1	SPIRE1	KDM2A	ARHGEF28	PACSIN3	TRIM47	RNPC3	CCDC6	PHIP	IGF2BP2	HCFC1	HSPBP1	ARFGEF2	OSBPL10	DIDO1	CAMSAP2	RBM15	SVIL	CDK13	C1ORF52	GPATCH8	TRIO	ZFR	C2CD3	PDE8A	NEK1	PCF11	NMD3	ZBTB7A	FRA10AC1	H2BC11	SEPTIN2	DOCK7	FBXL20	PHKA1	SUPT6H	MPRIP	CHD3	ZC3H13	PDCD5	HIRIP3	TTC28	KIF1C	PID1	BAZ1B	TRIP12	EIF5	SAFB2	TCF20	PLEKHA2	SF3B2	PRPF4B	FNBP1	RBM12B	SIN3A	PRR14	MRPS16	SERBP1	GIT1	EFR3A	DMWD	NUP35	KIFAP3	SMG8	ZMYND8	BRD3	SRRM1	NKTR	SORBS1	COIL	PDS5B	XPO4	METTL1	RNASEH1	DBN1	PUS1	GNL3L	RAD50	VAMP4	UBAC1	DOCK9	UBE4B	STK11IP	TSC22D4	SH3BP5L	SUGP1	BIVM	ATN1	YLPM1	SMARCAD1	CCDC12	RBMX2	C2CD5	SHROOM2	CCZ1	POP1	BUD13	R3HDM1	RBM26	TRRAP	PPP6R3	RBM15B	GARS1	FAM160A2	GRIP1	OSBPL3	RIF1	HOMER3	SPIRE2	KBTBD11	RFFL	TBC1D1	ZFYVE19	BAG2	USP6	WASHC2A	WASHC2C	DDX55	WDCP	ZNF22	KDM2B	TASOR	ANP32D	RANBP3	OXSR1	H4C1	NIBAN1	SMAP	WDR55	TBC1D14
405 proteins down-regualated at 24h in SARS-CoV-2 infected cells from Bouhaddou et al. 2020	Proteins differentially phosphorylated in 24h SARS-CoV-2-infected vs 0h mock-infected Vero E6 cells from Bouhaddou et al. (2020) The Global Phosphorylation Landscape of SARS-CoV-2 Infection. (Cell, 8/6/2020)	UHRF1	RB1	RBL1	CDK5RAP2	APC	HECTD1	LARP1	EPB41L2	SUN2	NEK9	PTPN21	MAP7D1	LARP4B	MACF1	AHSG	ELAVL1	ANXA2	CENPF	RUNX1	CIT	BRD2	MARK3	ZDHHC5	UBAP2L	MYCBP2	MEPCE	POLA2	NPM1	CRTC3	NUP98	MARK2	CCDC86	GSK3B	PLEC	CDK2	CHD1	PTK2	PLEKHA5	ERC1	RPS6KB1	NSMCE4A	NEO1	ALB	SGTA	EIF4B	AUTS2	TRPS1	YAP1	SH3RF1	COBLL1	PKP4	PTPN13	RICTOR	MARCKS	RPL24	ZEB1	CEP170	NEDD4L	SRRT	C2CD2L	TMEM184B	RIPOR1	STMN1	TBC1D9B	HS1BP3	NUMA1	FLNA	LMNA	ZYX	PLK1	TOP2A	LMNB1	DEPDC1B	ARHGAP29	BUB1	CDC6	EIF4G1	SMTN	SNAPIN	SLCO4A1	TPX2	ANLN	NCAPH	CDC20	PKMYT1	HJURP	MKI67	DTL	AKAP12	FAM83H	CDKN1A	ZFP36L1	EP400	BCL9L	PAK4	CEP170B	ZNF687	MAP2K3	SAFB	PRC1	PTPRU	MEF2A	FOSL2	KIF13B	ZFAND3	PLEKHG3	ULK1	AKT1S1	CHAF1B	ECT2	PBK	ARHGEF39	MASTL	ADAR	TRAFD1	DPYSL2	EHD4	BMPR2	TNS1	SNRK	PCBP1	JUNB	POLDIP3	PPP1R14A	VIM	SP3	ERRFI1	MYLK	TNS3	FNDC3B	RBM7	VPS26A	PHLDB2	NUCKS1	GEM	SCML2	DGKQ	TNFAIP3	LCE3D	FILIP1L	PPFIA3	FOXK1	MAPRE3	ACIN1	MBD4	DKC1	DONSON	TMPO	ANKRD39	NUP107	RRN3	PTBP3	PLEKHH2	NUFIP2	SAMD4A	ID2	CLIP2	ATAD2	CSRP1	CDCA7	JPH1	TRA2B	FAM110A	ZC3HAV1	PIKFYVE	RGS10	DYNC1LI1	AJUBA	KATNA1	MAP1S	PSIP1	MCM4	SLC20A1	ALYREF	HAUS6	LMNB2	KIF3B	SPAG9	KPNA6	MLF2	TWISTNB	HERC1	PNISR	THOC2	THRAP3	SRRM2	BAZ1A	PATL1	RHBDF2	SEC61B	KHDRBS1	AKAP11	NONO	SON	ADD3	SOBP	STK17A	ETV3	PUM1	UFD1	SSU72	RANBP2	UBE2J1	CAMSAP1	NADK	MAP3K7	ATG9A	SEC16A	SPP1	WTIP	C12ORF45	PPHLN1	AHNAK	CDC42SE1	CCZ1B	NDE1	MFF	DDX54	MTA2	EML4	INPP5E	MSH6	DNTTIP2	WDR43	AKAP10	HTT	ARID1B	AKAP13	PHLDB1	SYNM	BAIAP2	NCOR2	ATP13A1	PRRT3	NBN	STRN4	TANC1	RAPGEF1	MDC1	SMPD4	MICAL3	RAF1	ABR	LRRFIP1	FLNC	TSSC4	UCK2	NAB2	PBRM1	MTUS1	HDAC4	ARHGAP5	NCOR1	MAGI3	JMJD1C	SIPA1L3	RALGAPA2	DCLK1	NF1	EHMT2	TSC2	PCM1	LRWD1	AMBRA1	TP53BP1	DCAF1	PRKDC	CNOT2	RFC1	ANKLE2	SCAF11	RALGAPB	PARP4	NCOA1	AFDN	ABI2	MTDH	MGMT	REPS1	MET	ANAPC1	UTP11	ZC3HC1	RCC2	TCOF1	RRP1B	PMS2	CD2AP	NOLC1	SNRPC	SLC4A7	EIF4ENIF1	ATXN2L	MED1	MGA	GTPBP4	GPATCH2L	MID1	RPA1	AFAP1	CPD	TMEM131	DENND4C	AEBP2	PHRF1	HCFC1	ZNF444	TBC1D4	NCBP3	RBM15	CDK13	CLIP1	CDK18	UCKL1	CCDC61	ZNF609	NEK1	PCF11	MORC2	PALLD	BRWD1	CDK14	H1-2	RIPOR3	H1-3	FAM53A	ATL3	LNPK	DOCK7	KMT2D	ZHX3	MPRIP	ZC3H13	DBNL	BAZ1B	TRIP12	XRN2	RBM25	ZFC3H1	IRF2BP2	MICALL1	FMNL3	HDGFL2	CXADR	LARP4	RAD18	TNS2	FRMD4A	NUP35	SNAP23	SRRM1	SORBS1	RAB3IP	ZNF622	SAV1	ARHGAP39	PDS5B	CD3EAP	DBN1	STRIP1	ZNRF2	ITPRID2	TFAP4	FAM53C	WIZ	PANK2	JPT2	SRBD1	FAM76B	KLC2	SGTB	BAG4	HABP4	ZNF638	CLASP2	ZNHIT2	WDR91	CCZ1	BUD13	YRDC	FAM122A	YEATS2	FBXO46	ARFGEF1	RIF1	SURF6	TEPSIN	TBC1D1	MAP7D3	WASHC2A	WASHC2C	INTS10	RSL1D1	DCAF15	LRCH3	CRYBG1	SLAIN2	H2AX	CDC23	BCLAF3	CBX8	LCE3E	TASOR2	ATRIP	MTMR2
236 proteins up-regualated in SARS-CoV-2 infected cells from Bouhaddou et al. 2020	Proteins differentially phosphorylated in SARS-CoV-2-infected vs mock-infected Vero E6 cells from Bouhaddou et al. (2020) The Global Phosphorylation Landscape of SARS-CoV-2 Infection. (Cell, 8/6/2020)	MYH9	MPHOSPH10	HDAC2	ATP13A3	HSP90AB1	MACF1	RNF2	RETREG3	PKM	BRAF	HSPB1	LARP7	FRMD6	SNIP1	DNMT1	NUP214	RCC1	NPM1	PPIG	PPIA	PLEC	CHD1	PLEKHA5	TLN1	SAC3D1	CYBRD1	FNBP1L	TJP1	KIAA1143	CD2BP2	USF1	ZNF316	NUMA1	RETREG2	TKT	WDR13	TOP2A	EZH2	SAP30	SLC16A1	KIAA0930	STARD13	EIF4G1	SORT1	NCAPG	AKAP12	IWS1	CTNNA1	STK4	STK3	ABCF1	HMGA1	HERC2	HNRNPK	CTR9	SAFB	PSMA3	SCAF1	OGFR	TIMELESS	DPYSL2	RPS28	EEF2	ALDH1A1	HNRNPUL1	MATR3	VPS35	PDCL3	NUCKS1	MYO18A	VCL	PGRMC1	RBM8A	SLC18A3	BRD1	ACIN1	TAF12	DDX18	TFPT	CDC26	HDAC1	DKC1	PCBD1	SSB	SKP1	BZW1	LEO1	MFAP1	VGF	ZDHHC23	MAP1B	SURF2	SETD2	CDH6	SLIRP	TRA2B	MSI1	MCM4	MCM7	WDHD1	HNRNPA2B1	RPL22L1	UTP20	KIF1A	EIF5B	BOP1	THRAP3	RSF1	SRRM2	RBM34	RCAN1	RHBDF2	SH3KBP1	PYGL	PUM2	DPYSL3	RANBP2	OSTF1	EIF2AK4	ARRB1	TXNL1	SAE1	PRPF6	USP39	TNFAIP1	STK10	C9ORF78	CCZ1B	STK25	ERCC5	FIP1L1	DDX54	SUV39H2	CEBPZ	AKAP10	CPSF3	ZMYM2	RALY	EEPD1	SYNE2	STK24	MADD	NOP56	MDC1	XPC	KAT5	RRP7A	NAP1L4	PTK7	IGF2R	SRF	RREB1	ELAC2	SSRP1	USP28	RALGAPA2	TNKS1BP1	DCLK1	RRAS2	SUZ12	ZBTB21	LRWD1	HSF1	ATG2B	TP53BP1	PRKDC	HUWE1	SLC4A1AP	UBXN7	GBF1	PPM1B	PHF6	MAP3K2	PEA15	RBM17	BCLAF1	CCNH	POLR3E	PPIL4	BYSL	CD2AP	CDK12	WDR70	VIRMA	DPF2	DDX24	SPIRE1	KDM2A	ARHGEF28	PACSIN3	PHIP	RBM15	CDK13	GPATCH8	NMD3	BCKDHA	ZBTB7A	SEPTIN2	PHKA1	SUPT6H	CHD3	PDCD5	HIRIP3	PID1	BAZ1B	TRIP12	SF3B2	PRPF4B	EFR3A	SMG8	ZMYND8	SRRM1	PDS5B	RNASEH1	UBAC1	UBE4B	SUGP1	BIVM	CCDC12	CCZ1	R3HDM1	PPP6R3	GARS1	FAM160A2	SPIRE2	WASHC2A	WASHC2C	DDX55	KDM2B	ANP32D	RANBP3	OXSR1	NIBAN1	WDR55	TBC1D14
238 proteins down-regualated  in SARS-CoV-2 infected cells from Bouhaddou et al. 2020	Proteins differentially phosphorylated in SARS-CoV-2-infected vs mock-infected Vero E6 cells from Bouhaddou et al. (2020) The Global Phosphorylation Landscape of SARS-CoV-2 Infection. (Cell, 8/6/2020)	PTPN14	RB1	APC	HECTD1	LARP1	EPB41L2	NEK9	MAP7D1	LARP4B	MACF1	AHSG	ZC3H18	ELAVL1	RUNX1	BAG3	CIT	UBAP2L	MYCBP2	MEPCE	POLA2	NPM1	CRTC3	MARK2	CCDC86	GSK3B	PLEC	PLEKHA5	RPS6KB1	ARHGEF12	SGTA	EIF4B	AUTS2	SLC4A4	YAP1	PKP4	MARCKS	ZEB1	CEP170	NEDD4L	SRRT	C2CD2L	STMN1	TBC1D9B	HS1BP3	LMNA	ZYX	PLK1	TOP2A	LMNB1	BUB1	SMTN	SLCO4A1	TPX2	ANLN	NCAPH	HJURP	MKI67	DTL	CDKN1A	ZFP36L1	CDYL	EP400	BCL9L	CEP170B	MAP2K3	PTPRU	MEF2A	KIF13B	ZFAND3	PLEKHG3	ULK1	CHAF1B	NCAPD2	PBK	TRAFD1	BMPR2	TNS1	JUNB	VIM	TNS3	FNDC3B	PHLDB2	NUCKS1	GEM	TNFAIP3	PPFIA3	BRD1	ACIN1	TMPO	ANKRD39	NUFIP2	ID2	CLIP2	CDCA7	ZC3HAV1	RGS10	DYNC1LI1	KATNA1	MAP1S	PSIP1	SLC20A1	HAUS6	LMNB2	TWISTNB	HERC1	PNISR	THRAP3	SRRM2	BAZ1A	RHBDF2	OPTN	KHDRBS1	AKAP11	NONO	SON	ADD3	SOBP	ETV3	PUM1	RANBP2	CAMSAP1	MAP3K7	NUP153	SEC16A	SPP1	PPHLN1	AHNAK	MTA2	EML4	DNTTIP2	ARID1B	AKAP13	PHLDB1	SYNM	NCOR2	PRRT3	SMAP2	MYO9B	LUZP1	MICAL3	FLNC	TSSC4	UCK2	NAP1L4	MTUS1	NCOR1	JMJD1C	RALGAPA2	EHMT2	PCM1	AMBRA1	TP53BP1	DCAF1	CNOT2	ANKLE2	NCOA1	SYNPO	RBM17	AFDN	MTDH	REPS1	ANAPC1	ZC3HC1	TCOF1	RRP1B	PMS2	NOLC1	EIF4ENIF1	ATXN2L	MGA	RPA1	CPD	TMEM131	DENND4C	PHRF1	HCFC1	TBC1D4	RBM15	CDK13	CLIP1	UCKL1	ZNF609	NEK1	PCF11	PALLD	H1-2	H1-3	FAM53A	ATL3	LNPK	DOCK7	ZC3H13	HNRNPU	DBNL	BAZ1B	TRIP12	ZFC3H1	MICALL1	FMNL3	HDGFL2	OSBPL11	LARP4	FRMD4A	SNAP23	SRRM1	NKTR	DBN1	STRIP1	STK11IP	ITPRID2	FAM53C	WIZ	PANK2	JPT2	KLC2	SGTB	BAG4	HABP4	ZNF638	CLASP2	ZNHIT2	JCAD	SHROOM2	WDR91	FAM122A	YEATS2	MVB12B	RIF1	SURF6	TBC1D1	CLASP1	MAP7D3	RSL1D1	LRCH3	CRYBG1	SLAIN2	CDC23	CBX8