Healthy v SARS-CoV-2 lung GSE147507 down STARD3 RBFOX2 UNC13B PRELID1 STARD9 ZNF160 WDR74 PRKAB1 DKK3 CHFR NISCH DDX39A PSMC5 PSMC3 CYP1A1 PSMC1 DCHS1 ASB1 VPS28 SF3B5 PDXK AHNAK COL12A1 ADCY4 SPG7 DLL1 DCAF5 TPRG1L ADCY6 DLL4 PSMD6 MYC PSMD2 PXDC1 S100A13 ZSCAN18 FZD4 KLF13 TSPYL2 ZNF263 RPL41 PHC2 NEBL PMM2 NCAPH2 MCAM STARD10 VPS13D VPS37B NR1D2 TFIP11 FIBP BCR UCK2 ITPA SIVA1 SNAI1 HBP1 MDC1 RPL3 MEPCE RRP1 ENO2 XPC GATA2 ELK3 ANAPC11 ABR C12ORF57 PPP3R1 GUCD1 GJA4 GRPEL2 HMOX1 IER2 SFN WDR37 BLCAP JUN DUSP1 SPHK1 NFATC4 NFATC2 GNL1 GNL2 ITPKC LETM1 MMP14 PXDN ITPKB PLEKHM2 RAPGEF3 MYZAP FXYD6 RAPGEF1 PLEKHM1 GAS6 MGLL ZNF593 ARPC1B AKAP17A TIMM13 CTCF LRRC32 FAM160B2 MYCT1 HMGXB3 MEF2D UTP6 FOS TTC7A TUBB4B SERPINB6 FARP1 XAB2 DDB1 SPSB3 EBNA1BP2 PLEKHO1 ADAM15 FOSB PLEKHO2 TSR1 ENG ZNF330 ZNF451 HEXA RPLP0 TCF25 HEXB NDUFA11 TCF21 SNX11 NOC2L TUBA1A SMPD4 NDST1 TUBA1C ARFRP1 CKB RRP12 ZSWIM8 BRD9 FBXW5 SEC24C USP7 SEMA4C PPP1R16B MUL1 FAM118A HIPK2 RPSA PPP1CA NRBP1 TUBA4A MADD MFNG MAPKAPK2 CSPG4 SREK1 LZTR1 GOLGA8A SLC25A36 KANK2 PHLDB1 RNMT PLXND1 ODC1 DLST GLT8D1 FAM214B SLC9A1 RNF31 GGA2 ABLIM1 TUBB6 ABLIM3 MFN2 SLC39A7 RPS5 FLNC SLC25A44 GRB10 EIF2B5 EIF2B4 LRRC47 OSBPL5 ATP8B2 AIP FBXO31 PGF PYGO2 MAFF MOB2 MAFG BCL2L1 DNMT1 ST6GALNAC6 BCL2L2 TUBGCP2 NAB2 FAM13B CUL1 EDC3 EDC4 BAG3 UROD NELFE PLXNA2 MAF1 MOAP1 SLC38A5 PPP1R12A TMEM255B WIPI1 MICAL3 FAM219B CDC42BPB TMBIM1 CDK9 DNAJC7 MFAP1 NES MCM7 EIF4E2 BCAR1 SLC25A4 SLC25A3 SRCAP LMBR1L ITPR3 FOXK2 ITPR1 LBH DNAJB2 APH1A RRP7A PPP6R2 CCDC85B VPS54 DNAJB4 RALGDS ACP2 MBIP PPP1R14B DST ATRX CIRBP TPD52L2 RANGAP1 SELENBP1 MYO1D KCTD10 CTDSP2 CDC37 EIF3G EIF3B NOP56 PPP1R13B TSSC4 CANT1 HDAC3 LUZP1 ZBTB44 KIAA0100 SEMA3F TTL PBXIP1 HDAC7 SLC25A29 ADAMTS2 SIN3B KCTD20 UPP1 PCDH1 SLC25A25 MLXIP SLC35A4 ENTPD6 RSAD1 BSDC1 AMFR AFG3L2 CD2BP2 ULK3 CCM2 BCOR AKAP1 BAIAP2L1 EXOSC7 SEPHS1 E2F4 CCNL2 EGR1 ARRDC2 XRCC6 GADD45B GADD45G RPS28 SMTN DHX29 BAP1 TCERG1 PCDH12 PIEZO1 MPHOSPH10 TXNDC11 CTR9 UBE2J2 GOLGA3 TNS1 RASSF1 PELO INPP5A NUDCD3 KAT5 KIAA0930 MICAL1 EPC1 INPP5K PDE2A ASL TSPAN4 LCN10 ATP6V0A1 ATP6V0A2 STAT5A SFTPC HARS2 FAM32A MRPS2 ID3 CC2D1B SGK1 ARHGEF7 UBXN1 ACVRL1 RRAD C2CD2 ZFAND2B STC1 MEDAG ZMYM2 ACTR1B MAP4 SH3PXD2B SH3PXD2A STK38 SAFB2 C1QBP QSOX1 SPRYD3 MLH1 METTL3 PRMT1 THOC6 MYO9B SGSM2 GAK TXLNA CTTN PER1 SGSM3 F2RL3 ERRFI1 ROBO3 ROBO4 FHOD1 ZDHHC7 CRIP1 TRAK2 TRAK1 HERPUD1 GUK1 ALS2CL SERTAD3 SERTAD1 CCT8 REV3L KLHDC3 PDGFRB RALBP1 PTCD3 RARRES2 ARHGAP29 TRPC4AP TANC1 EEF1A1 ILVBL WBP1L PPIG AMOTL1 MPHOSPH8 RAF1 INPP1 KDM1A CD82 GALNT18 NOL8 PRKY PRDM2 CIB1 NDRG1 TBRG4 RXRB CCND1 EFNB1 PES1 HCFC1R1 BAALC S1PR2 SASH1 FDPS PCID2 ARHGEF15 DDX56 TBCD NASP CTPS1 SMAD7 DEXI SSH1 SSH2 PAN2 NR4A2 ARHGAP10 SKIV2L CCDC130 SAE1 DOCK6 DDX5 LRRFIP1 NR4A1 RGS3 PODXL KIF3B CHMP1A TMEM109 CAMTA2 CYC1 ANKZF1 SUN2 URGCP SUN1 EGFL7 USP22 HSPA8 ARAP3 NAP1L4 PYCR2 PARVB RPS3A URB1 TGFBR2 IFT43 MEIS1 PEX5 NDUFS6 RASA3 ATG4B GRSF1 LUC7L3 DOCK1 B4GALT3 DDX47 AGAP3 TNFAIP1 DTX4 DDX42 DPP7 ZC3H7B GMPPA TMEM208 ZC3H7A RHBDF1 SGTA DAPK3 TBC1D9 THAP2 USF1 TAF1 ERCC1 CLDN5 PIK3IP1 CRY2 POLDIP3 LDB1 EHMT1 USP19 RND1 SPRED1 VSIG2 MAT2A GNA12 RPS6KA2 LRIG1 SCYL1 GET4 RBM6 CYTH1 Healthy v SARS-CoV-2 lung GSE147507 up PCGF5 MX1 DNAAF1 MCTS1 MX2 MARCKS CD4 SCGB1A1 RBP4 HSPA1A FAR2 HNRNPC TNFSF8 CDA PI4K2B IDO1 CKLF SF3B4 SAMD9 C1ORF194 SERPINE2 C3AR1 ASCL2 CLDN2 TMEM71 CLECL1 APOL6 GNG2 MILR1 GNG5 GBP1 GBP3 PROK2 GBP5 S100A12 EPSTI1 S100A11 GBP4 F8A1 JUND HLA-DRB5 BIN2 TREML4 PLBD1 ST20 PSME3 HAMP GAPT CRYAB FREM2 PADI2 CFB MS4A7 GABARAP SPI1 GMFG HPR SAMSN1 GATA1 GLDN RNF213 PLAC8 ZC3H12A BLOC1S1 AGMO HESX1 LYN PHF11 PRSS16 TET2 TIMM23 APBB1IP SULT1B1 RNF149 C4ORF3 SIGLEC5 HCST SIGLEC7 SERPINA1 ZC3HAV1 FPR1 IQGAP1 LITAF VSIG10L TRIM5 STAP1 SH3BGRL3 P2RY13 P2RY14 HELLS SF3A2 STAT1 STAT2 STAT4 WNT7B RNASE2 SERPINB9 F5 TMEM154 GPR141 PSMA4 COL4A1 DHRS9 TAOK3 HCLS1 PLP2 PELI1 CCL11 CTF1 PIGR SNX10 IFIH1 GNLY NAMPT HLA-DPA1 GCNT3 MPV17 METTL7B JAK3 CCL19 PGLYRP1 CCL18 OLR1 TLE4 CD164 GK TOR1B TPM4 POU2AF1 PNRC1 SLC9B2 CXCL10 CXCL11 CLEC4D CLEC4E CLEC4A CLC LY6E ANKRD22 S100A9 FAM8A1 S100A8 VKORC1L1 CSF3R GTF2B HP UCP2 GPR65 TNF CXCL16 CXCL17 HPGDS BCL2L14 CDH2 RNF19B LAMP3 CFL1 NBN SLC39A8 CERS6 LY86 ADRA2A STK24 LCN2 TPP1 XAF1 SP140L NOP10 MAP3K13 KCNE1 ARHGAP9 NCF2 NCF4 GPR84 SAT1 CYP19A1 FAM216B MMP25 AMDHD1 PIM2 MAP2K6 RPH3A GPX2 EIF2AK2 TRPA1 CFLAR DBNDD1 FCGR2A LCP1 BCL6 BCL3 SLC26A8 LCP2 SFT2D1 LRRK2 LY96 TREM1 C15ORF48 FCGR3A FCGR3B PSTPIP2 C8ORF82 LBP SERF2 MROH8 CR1 PATL1 KCNH7 KPNB1 CHIT1 RP2 EVI2B MNDA TRIM38 SFTPA1 BPI SFTPA2 PIK3AP1 SMAP2 CCDC71L WIPF1 C1S FHL3 DDX60L ARRB2 FCAR TNFSF13B CLEC1A FCGR1A CCL8 CCL7 CCL4 CCL3 CCL2 IGF2BP3 ATP7B FCGR1B TRIM21 ARL5B KCNJ2 POLR2K TRIM22 TMEM52B SP110 IL1R2 ACSL1 RSAD2 PML SNTN LPAR6 XRN1 COL9A2 EIF1B PFN1 ALPK1 IFITM2 IFITM3 IFITM1 FGL2 AQP9 CISD2 GLRX IL2RG UBE2L6 STX11 HERC6 ACTB HERC5 SLAMF7 B2M CDR1 NTNG2 RABGAP1L BCL11A CMC2 TNFSF14 SIAH2 HLA-C HLA-A HLA-B IFI44 VASP TP73 MYL12A VNN2 VNN3 RGL4 CYSTM1 APOBEC3A LST1 IL1RN ANP32A IFIT5 DCUN1D3 KLHDC7B IFIT2 IFIT1 IFI30 IFIT3 FTH1 MIER1 TNFSF10 FFAR2 LGALS9 TNS4 SFTPB CCR1 PSENEN SIGLEC14 NCOA7 CCDC114 NMI RHOH HBA1 TFEC LILRB2 HBA2 CYP7B1 LILRB3 KLK10 NME1 SYN1 IL1A CEACAM3 TLR1 IL1B PTPRC CEACAM1 NME8 CEACAM6 TLR4 TENM1 IGSF6 DAZAP2 HBB TOP2A BRCA2 CTSS CHRAC1 CLEC7A PDZD11 CD38 CD37 FCER1G CTSE SPRR2E CAMP CTSC CD53 GCH1 HCK RAB11B PARP9 FKBP1A CD48 SAA1 POPDC3 C1QC C1QB CSTB CSTA WAS LILRA1 PTMS CST7 LILRA5 LILRA6 SERP1 ZDHHC19 SPTLC2 DMBT1 RAB8A RAC2 ENPP6 RAB8B CD55 CORIN LMO2 CA12 ZBP1 CD74 GABRP G6PD GCA TYROBP PDGFRL IFI44L DOK3 CYP24A1 CAPZA1 MYADM CD69 YPEL3 FCN1 TFAP2A IVNS1ABP CNTN1 RGS18 TPSB2 NAPA NEXN IFI6 SAMD9L STRN4 KHSRP PAK1 BASP1 REPS2 MGAM ATP6V0C DDX58 CYBB ISG15 USB1 TDRD7 MXD1 ALDH3A1 SELL CDHR5 CARD16 CARD17 CHMP5 C5AR1 CACNA1A PSEN1 SEZ6L2 CSF2RB CPLX2 DAPP1 DDX60 HCAR3 IL18RAP HCAR2 FDCSP FLOT1 ZNF385A ABCC2 SRGN MMP8 CBX4 PILRA OLIG1 ANXA2R OAS1 OAS2 OAS3 TNIP3 IRF2 ALPL CHI3L2 IRF9 MNS1 IRF7 ZMYND12 NFKBID CHI3L1 HS3ST3A1 RTN3 GPSM3 YWHAE GSK3A MCTP2 HSPB6 BCL2A1 TNFAIP6 DNAH7 LMNB1 SIRPB1 CA1 C20ORF203 CASP4 CASP5 SP140 PDE4B CASP1 CYTIP RBM11 ALOX5AP YWHAZ SOD2 FGR AIM2 HSH2D PPDPF S100P DYNLT1 LTF USP15 STEAP4 RTP4 PLEK CLEC12A CXORF21 SIX1 MSMO1 OASL ARHGDIB VSIG1 PTK2B MDH1B Mock v SARS-CoV-2 24h hESC-pancreas GSE151803 down CHGB UNC13B CACNA2D2 CACNA2D1 SERPIND1 RFX3 DICER1 BTBD11 LOC101928641 EML5 GRIN3A ASB9 RFX6 NHLRC2 CPEB4 FSIP2 CPEB3 C2ORF72 AHNAK COL12A1 SYNPO2 ADCY2 SLC5A3 PREX2 SPOCK3 ZDBF2 VIM-AS1 PLCE1 ANKS1B GPR158 ST18 KLF12 PHC3 APOOL VPS13D PRKCE ABCA5 VPS13C PRKCA KIAA1244 VPS13A LOC101927331 FAM135B KCNMA1 HECW2 NOSTRIN FAT4 FREM2 DZIP3 KDM7A CEP85L PKI55 NAPEPLD RAPH1 LIPC MYSM1 KIAA1109 RP5-1033H22.2 ZC3H12C PLCG2 GPR179 LMCD1-AS1 DUSP5 COLCA2 DUSP4 SHPRH ZNF483 IL10RA TET1 PAX6 PRSS12 FAM126B RNU2-2P TTLL7 CENPF KAT2B TTLL6 BHMT SLC7A8 HEATR5B FXYD3 PRPH2 FXYD6 RAPGEF4 RAPGEF5 RET KCNC4 CYMP ZNF518A TRIM2 IQGAP2 UGT8 ATXN7 TIMP3 TCP11L1 SLC18A1 C16ORF54 SLC18A2 C5ORF42 WDR17 TMOD2 ZNF462 CDKL5 PPARA STAT4 STXBP5L ADAM12 RNASE1 TRNY PLCB4 ANGPTL7 MAP1B TAOK1 FABP1 PHLPP2 SMG1 GCNT1 TCF24 KCNA3 ADAM23 SLC9C1 LOC102724230 SLC8A1 LYST EEA1 TMEM144 NDST3 NEFM GCNT4 CSMD3 ANKRD29 ZNF441 C3ORF80 PLXNC1 AGL DIO1 MITF DCDC5 LOC101927279 GPR50 IAPP KAT6B OSBP2 DGKG PARK2 PHLDB2 SEMA5A TUBB1 RBM5-AS1 FAM129A ZC3HAV1L CLU LCLAT1 FRY ZBTB20 NPAS4 SLC9A2 FGD4 CYSLTR2 UG0898H09 PTAR1 MACROD2 RP11-242D8.1 NKTR STOX2 C1QL1 C11ORF87 TRPC7 ZNF658B TRPC4 CRNDE ESRRG NBEA C1QL3 MOB1B DMXL2 BIRC6 MAP3K15 C21ORF62 DGKI ZNF652 DPP10 LRRC58 CHODL ATP8A1 BZRAP1-AS1 CLSTN2 KMT2C MSI2 GPATCH2L AK5 RORA ZKSCAN8 SESN3 LEPR CEP350 SRGAP3 MACC1 ADAMTS20 GPR98 NEB USH2A KY CDC42BPA SEZ6L DAB1 LANCL3 NF1 OGT LCOR AAK1 EIF4E3 CRYBG3 C21ORF88 NLGN3 NLGN1 ONECUT2 LOC102724851 UBR3 CYP3A5 ITPR1 UNC80 LOC102724733 ZNF507 PHACTR2 KIAA0319 FNIP2 MDN1 LOC728755 WASF3 MYO16 KCNH7 RALGAPA1 ZBTB38 SPAG5 KIAA1549L LOC101928069 KLF2 MYO1A ASPH ASXL3 PKHD1L1 EGFEM1P KCTD12 BDP1 CD101 SLC47A1 LOC102724873 DDX60L PPM1L SYNE2 THSD4 TTR SGCD PSD3 NHS ITGB8 DYNC2H1 ENTPD3 SFMBT2 SLC12A2 PCDH20 NBEAL1 MALL FRAS1 APC XRN1 CTH MT1G TMCC3 EPHA4 CPNE9 LRP2 ADH1A AKAP9 NDNF HS6ST3 RAB11FIP1 RAB11FIP2 NIPAL1 LOC101060391 PEG10 FAM63B N4BP2 FER1L5 ST6GAL1 RAB39A MYO5A ACADSB ANK2 WNK1 MEP1A VGLL3 MRAP2 LPGAT1 MACF1 SPON1 TMTC1 RCBTB1 LPAR1 GOLGA4 SYNPR APOM SLC9A7P1 ANPEP PDE2A PIEZO2 PDK4 KIF21A ARSJ KCNN3 TSPAN1 TSPAN2 ZBED6 PDK3 SOX5 RALGPS2 APOB GABBR2 LINC01021 RHOH MSS51 MTSS1 PTPRD ALDH6A1 PDIK1L ID4 FAM20A ALDOC AKR1B10 MEGF9 VWA8 PCSK2 CSRNP3 SLC44A5 PTPRT PTGDR2 MAOB STC1 SLC7A14 SCAI LINC01004 TMED8 CGREF1 FAM46A MYO9A MPP7 AC009501.4 KIT TCEA3 NEK10 LPPR5 APBA1 KIAA1958 LPPR1 RYR2 DIRAS2 PTGER3 FHOD3 GDPD2 AIF1 PCLO AC093375.1 EPB41L4B AKAP12 EPB41L4A RPPH1 SCML2 CTNNA3 REV3L CORIN GUCY1A2 PRLR DENND4C OSR2 VWDE GCG LMO7 LIFR TARBP1 ATP1B2 TMEM131 ARHGAP26 HS3ST5 COLQ GPRIN3 PCP4 DOK6 GPD2 STEAP2 GALNT13 CHRNA2 PPP1R26-AS1 KLB KDM1B SLC1A1 PRUNE2 KIAA2026 TMEM245 PCNX SPTSSB MYH10 GAS2L3 CLASP2 SLC30A8 BPTF TTC37 ARHGEF12 ACBD7 CASR SLC30A4 EPHX1 LOC101928704 HGF EPHX2 ARID5B DNAJC13 SLC30A1 HELZ INHBB NR4A3 NR4A2 DIAPH3 TMEM236 TMEM117 MAP7D2 CDH12 COL21A1 AMPH GCLM FBN2 ERO1LB CACNA1A DOCK9 HMP19 LPP LOC151760 PLCXD3 SCGN SYDE2 RGS6 KCNV2 PDZD3 PDZD2 CDH22 COBLL1 STARD4-AS1 SACS UTP20 QSER1 RGS7 ABCC4 BCKDHB ABCC2 ABCC8 MKL2 USP24 NAV2 SYNDIG1L MMRN1 FEV SNORD44 TSGA10 ABCB4 TTC22 CHD9 USP34 NRXN1 NID2 AFF2 DPP4 AFF1 C7ORF76 LONRF2 OPCML DCC FGG PDE4D LGI3 ANXA13 OPRK1 ATP2B4 KCTD3 ATP2B2 ATP2B1 PEAK1 DCX DAAM1 CLOCK LOC101929604 KRT81 LDB2 ACVR1C NR3C1 FAM154B IGFBPL1 FAM178A CLMP RPS6KA3 EPS8L3 Mock v SARS-CoV-2 24h hESC-pancreas GSE151803 up LOC102724124 EVA1A EML3 CFC1 FEZ1 ASPHD2 PCDHB2 TRIP6 FLJ45743 HSPA1A GPD1L VIP HCP5 PCDHB9 ANKLE1 PRSS2 RPL10 SERPINE2 LOC101929748 LOC101928891 FAM169B ADCY8 ACCS ASCL1 APOL6 TFPT LSM12 RPL17 HES1 APOL2 SAMD11 HES6 PLK5 LINC00673 PLK2 CEL HDHD3 RIPPLY3 GJB6 SERPING1 HOXB4 C19ORF25 PSME1 SIVA1 PKIG CFB PID1 CELA3B HPN C1ORF173 GNS TPTE2P1 C2 ANAPC11 HPX C3 HTR7 CYB5R4 ZC3H12A TDO2 BLOC1S3 HMOX1 SFN JUNB PROM1 IER3 PPAPDC1A GSDMD WDR38 RIPK4 ROM1 SPHK1 NFATC4 TACR1 TMEM173 CP JOSD2 LYZ MMP11 TMEM37 MZT2A ECSIT BHLHE40 PLEKHM2 MDFI SERPINA3 C11ORF31 SERPINA1 SLC18B1 GRAMD1A SERPINA11 ADM TMEM163 SDSL C12ORF44 GPR111 LDHA GPR115 TEAD4 CCDC162P MEF2C CDKN2A STAT3 G0S2 DHRS2 SLC8B1 GALNT9-2 NUDT22 SPSB1 SDHAF1 PLEKHO2 LAMTOR4 ANGPTL2 MSRB1 SPEF1 TMEM51 KCNA4 LOC101928111 PRSS22 ADAMTSL2 MIR503HG PSMB8 NAMPT GPNMB TSPO JAK3 CSMD2 SEMA4B SLC39A1 ATHL1 S100A3 RASL10A CRYBB1 TAP2 TAP1 LRRC61 AGT NEAT1 RNF144A-AS1 SLCO2A1 SLC9A9 SNRPB CHRM3 LINC00242 SERTM1 SLC27A1 C11ORF71 CSF1 PROS1 GLT8D2 TNF PLOD2 PAPSS2 LAPTM4B ITPRIPL1 ABLIM2 RAB20 ZFP36 BCL2L12 ABLIM3 CDH3 HAS2 TUBB3 GRAP2 SLC16A3 IGFBP2 LINC01122 CISH FST ADRA2C PTGES2-AS1 MOB2 CDC42EP1 FTL NRSN2 KCNE4 CNP LOC102723465 LOC102724312 CHRD KIAA1751 GPR85 OLFML2B OSBPL10 VTN ELFN1 EFEMP1 RAB42 ABHD11 MMP25 AMDHD2 TRIM69 EFHD2 GYG1 OIP5 PIM3 BMF C1QTNF1 SLC38A4 SEMA7A IL13RA1 CPA5 PLXNA4 GPX1 ITGA1 KCNJ5 GLYATL2 GLYATL1 DTX3L SPACA6P YDJC FOXL1 TNFRSF1A ARL4D BCL6 LOC100129223 MFAP4 FAAH2 BCL3 ECHDC2 KCNK1 TNFRSF25 CBLN4 LINC00324 PLEKHF1 CNTNAP1 TRADD NLRC5 RAP1GAP SPR RDH10 C10ORF10 ME3 EMILIN1 SMOX UNC5A KCNK15 BOLA1 FOXJ1 ADCYAP1 TST TXNIP MTFP1 SLC25A6 FLT1 CEBPD COL15A1 PPM1N ECE1 NOB1 HHEX LOC100130417 CCL2 BAK1 UPP1 IL1R1 PHYKPL FBXO2 KRT8 EBF4 MTUS1 TM4SF1 SST NINJ1 LPAR6 LOC102724800 FLYWCH2 NEIL2 CDO1 IFITM2 IFITM3 LRP4 CBLC AQP3 HS6ST1 UBE2L6 PSMB10 C4B SUSD4 B2M HABP2 CER1 XBP1 GADD45B HLA-C GADD45G HLA-A HLA-B HLA-E VNN1 MC1R VNN2 VNN3 FLJ38668 KLHDC8B SMTN PPP1R1A SNHG11 ADCK4 SPON2 TSHZ3 LOC102723863 IFI30 IKZF4 ICAM1 MT2A SOX1 NKAIN4 LGALS1 RPS19 TNFSF11 ASL FAM65C A2M FFAR2 SIL1 SYNPO SCN1B CCR10 PTGES2 CCDC114 PRPF40B BTN3A3 ZNF503-AS2 RHOC C17ORF62 TLR2 TFAP4 CEACAM1 KRT19 TPPP3 ID1 RPUSD1 KRT18 ID2 KRT15 VWA1 TFF3 CLIC6 C2CD4A TWF2 C2CD4B C8B SOCS3 SBNO2 SOCS1 LOC100287413 KCNT2 SEC61B TM4SF18 TMEM176A SYK TMEM176B GAD1 MIAT ZDHHC12 THOC6 PODN TPST2 B3GNT8 B3GNT7 FAM195B KIF26B TSSK3 FOXA3 IL24 FAM69B CRYBA4 MIR7-3HG NUBP2 CXORF40A RP11-277P12.20 SLC22A31 UBTD1 TGFB1 HSD3B7 NPNT CD72 UNC5CL KLHL25 SPINK1 EEF1A2 ELMO1 CNTN5 PPIB LRP10 ALDH16A1 TYMP MPG SUCNR1 LOXL4 SCN7A C1RL ROMO1 S1PR5 CARD11 TGIF1 PSPN CYBA SSH3 PDIA5 EFNA1 DLGAP1-AS1 TMEM115 SELM CHMP6 CCL4L1 C5AR1 CALCA LGALS3BP SLC2A1 JADE1 COX7A1 ETS2 RP11-538P18.2 TGM2 RGS4 UBB UBD ZNF385D PMAIP1 FLOT1 A4GALT EGFL7 NFKBIZ DTNBP1 IQCD LAMB2 IRF2BP1 MMP9 SSTR5 SEPT4 GALK1 NFKBIA IRF1 IL7 RCN3 ELF3 EEF1D IRF3 MAP6D1 IRF7 RP11-10A14.5 COPE HAPLN1 ABCB1 NNMT UBA7 CXCL2 HK1 AGPAT2 CXCL6 CXCL5 LRRTM1 SYNGR2 CALB2 C9ORF16 GDAP1L1 LRRTM2 AOX1 CA8 SCN3A MAN1A1 WNT4 DACT2 GALNT9 LOC101927777 IL15RA DAPK2 EYA2 NEGR1 MIIP PCOLCE S100B KLHL41 THAP3 SOD2 PLA2G16 PTHLH THAP7 CLDN4 TRAPPC6A C19ORF66 PTX3 TRIB1 AURKAIP1 TSEN34 AQP10 MVP THBS3 RND1 GRM4 POLD4 PRRG4 CBS C19ORF70 LOC100996634 SCN5A ABCD1 MAPK4 Mock v SARS-CoV-2 24h hiPSC-CMs GSE150392 down NIPSNAP3B IFT81 DES FAM133A MYL7 IFT88 MYL2 MYL4 AGTR2 ACOT2 C19ORF47 ACOT1 NHLRC3 REC114 FILIP1 MYL9 RHNO1 CPVL ASF1B ASB2 HCN4 PGAP3 CRABP2 NCAPG NCAPH TMEM71 FBXL22 KNSTRN CRACR2B GNG7 SPOCK2 GTSE1 TAF9B PLK4 DMPK NEBL PLK1 TNNC1 CRPPA RMDN1 SETMAR AIF1L PBX1 DHFR ACE2 FERMT1 FAM111B GPR183 PKIA RNF207 PLBD1 WDR5B FARSB MKS1 CDCA3 CDCA5 SCHIP1 CDCA8 TMEM97 ENO3 SLC6A2 MYLK PRKAR2B GJA5 IL20RA PLAC1 MTERF2 PRIMA1 MYBL2 PRKACA SMCO1 CENPU C11ORF21 PDHA1 RMI2 TESC GABRA4 KIAA1143 CDC6 SIRT3 FXYD1 CENPE GJD2 CENPF MMP15 FAM222A TMSB15A CENPM HRC TMEM106C MYZAP ANKRD63 FXYD6 CDKN3 LIMS2 GPR27 GPR22 DMAC1 ACAT1 HIF3A TMEM163 SHD LDHD RAD51AP1 C14ORF180 CSRP3 TK1 PBK RHPN1 CEP55 DLGAP5 TMOD1 LEFTY2 EGLN3 ODAM PGAM2 G0S2 GATB STAT4 TNNI3K FMO4 PTGR2 SPSB4 HADHB FABP3 GATM RGN PLCB2 SLC29A1 TMEM229A SMTNL2 C11ORF52 FH SPEF2 COL11A2 EFCAB7 UNG TMEM141 MARCHF11 RCSD1 SLC8A1 TMEM143 LRRC10 TMEM144 NUDT12 HEY2 SULT1E1 NUF2 FPGT-TNNI3K METTL7B NUDT16 ZNF561 TECRL ITGA10 CSPG5 C11ORF71 FAM47E LSMEM2 HJURP CLU BZW2 ARMCX1 MACROH2A2 TSEN2 TSPAN32 FRZB C1ORF105 CDH3 NTF4 ZNF302 KCNH2 C1QL1 FANCL GOT1 CES4A FRMD3 HOPX NDC80 FRMD5 RCAN2 SCCPDH KIFC1 ZNF418 BIRC5 TROAP AC008575.1 SLC27A6 FAM13C ZC4H2 FAM107A HNMT FOXM1 CHAF1B NEK2 GYG1 OIP5 TSNAXIP1 SLC38A3 HHATL COA5 AC009133.6 GPX3 PPP1R12B KCNIP2 RFC3 KCNIP4 REXO5 NSMCE4A PCCB SYNPO2L VSTM2L TNMD SLC26A9 CDK1 MCM5 ACO2 NES ITGA7 TRIM54 TRIM55 TRH C15ORF41 CLCNKB NREP MB XIRP2 DRD1 SPX PHACTR1 CCDC34 PPP1R14C GRID1 CKAP2L MMAB AMT NICN1 EXOG PRC1 CIRBP TBX5 DHODH HAND1 ASPG HAND2 TAFA2 NECTIN1 DTL CDCA7L SMARCD3 ALAS2 TYRP1 UGT2B28 SLC5A12 TTK FOXRED1 CKMT2 ZNRF2 EDNRA CDC45 SRR HAUS8 SGCA SCRN3 TNNI3 TNNI1 TTC39A ADHFE1 MTUS2 ANKEF1 MTURN CDC20 SFRP5 SFRP2 NEIL3 PPP1R3C ULK4 CCDC87 COL9A1 CORO6 KIF20A VIPR1 CPNE5 SMPX APCDD1 STRIP2 E2F1 SUSD4 CPNE4 FSD2 PCLAF CALN1 SH3BGR SRPK3 DTNA FAM78A RPE65 PLPP7 PPP1R1A TNNT2 PPP1R1C ANKRD18A TLCD4 PTGES3L TDGF1 INKA2 ZBED8 ANP32A PDE1A SLC35D3 LPAR3 ACSM5 ART3 LGALS3 RASSF4 RALGPS1 PDK1 DECR1 PDK2 APOBEC2 ACAD8 KLHL3 NME5 MSS51 SNAP91 ZWINT SORCS3 MLF1 ALDH6A1 MPPED2 VSNL1 DEPDC1 ALDOC ATPAF1 RASL12 HMGCLL1 CLIC5 MAOB TOP2A FITM1 BRCA1 CLYBL BABAM2 STK33 AC108488.2 MAP3K20 CD36 SMYD1 LRRCC1 CAP2 PRMT6 ATP6V1G2 ATP6V0E2 PARP1 SUSD2 SORBS1 FAM189A2 UBE2E1 SORBS2 ALDH5A1 SPC24 TXLNB RAB9B TCAP TRIP13 SPC25 FEN1 POPDC2 AKR1B1 DIRAS3 ICA1 NUCKS1 NUDT7 SH3RF2 ATP5F1A GSG1 DGLUCY ENPP5 NUSAP1 ACADS CORIN GINS2 HFM1 MLIP PHYH GUCY1A1 MOG LIG1 CAVIN4 KLHL23 CNOT11 COLQ EEF1A2 SELENOP SGO1 GPD1 UBE2T POLE2 DOK7 FAM185A YPEL1 KLHDC9 MASP1 ATP1A2 COX6A2 TYMS MANEA AURKB CLGN EFNB3 CAPN3 TBX20 RXRG KIF22 SLC30A3 EPHX2 CHCHD10 CKAP2 ADPRHL1 QDPR CCNA2 COL21A1 FGF10 CASQ1 KIF2C CASQ2 FGF13 FGF12 CCDC121 ROGDI C17ORF97 PLCXD3 SLC2A8 RGS6 CCNB2 CCNB1 NPPA FPGT FLOT1 HADH A4GALT SH3GL3 ZNF385B BCKDHB TRDN CAV3 MYOCD NAP1L3 PEX3 NAP1L2 COQ7 BMP7 EPN3 BMP5 ACTA1 MEIS2 ACOX2 NDUFS2 ITGB1BP2 HSPB7 AC091551.1 PMEL NRXN1 HMGB3 HSPB3 LMNB1 LMOD2 LMOD1 SLC40A1 HMGB2 ENHO HRH2 UPK1B CPT2 ISOC1 FAM83D RRM2 RBM38 DAPK2 PDE4DIP PPP2R3B SHCBP1 CAT INAFM2 GALM SSBP2 PXYLP1 CLUAP1 CAMK2A AQP10 CAMK2B EMC10 LDB3 ACTC1 SENP8 OXCT1 PALMD SPEG MAN1C1 PDE6B CRYM Mock v SARS-CoV-2 24h hiPSC-CMs GSE150392 up MX1 RFX3 EVA1A L1CAM SPINT1 ASPHD2 TNFSF4 FNDC11 AGTR1 GTF2IRD1 ATF3 SERPINE1 C3AR1 ADARB1 SLC5A3 GABPB1 TFPI ADCY7 APOL6 GNG2 SRPX2 PPP4R2 GPBP1 MYC CSPP1 CEP95 STOM CYP1B1 UBASH3B HES1 GBP3 HOXA5 TIGD3 ZNF143 PRKCD STARD13 PLK3 KLF10 NR1D1 BAZ1A FOSL1 AL049844.1 PRKD2 SNAI1 FERMT3 CFB PTP4A1 GPR180 LIPG GPR176 ZC3H12A C9 SOX17 TMEM200A IER5 JUNB SLC19A2 AC015813.2 DUSP6 JUN DUSP4 DUSP1 CHKA SPHK1 EMP1 TET3 NFATC2 ADAM32 CARD6 CD200R1 DCBLD1 SLC7A5 TTLL8 AGO2 BHLHE40 BHLHE41 PIGA CENPL RAPGEF2 REL ANKS4B ACHE ELL FPR3 THY1 PANX1 MYCT1 BRD2 CDKN2B ELOVL3 FOS AEN SLC2A10 SERPINB8 RFLNA BAAT TMEM158 FOSB SNX16 ANGPTL4 CACTIN ENG LINS1 ERO1A RARG AC116366.2 PTAFR ATL3 PTGS2 LMAN1 NAMPT MRC1 PLAGL1 GPAT3 CSMD2 ZSWIM4 UVRAG PHLDA1 TLE3 AOC3 TLE1 IPMK SSUH2 ZBTB17 TFPI2 TAP1 SLC9A7 NCF1 SQSTM1 KCNG1 RNMT CSF1 LSMEM1 PPP1R15A AC025263.2 ZBTB21 TNC HR PLOD2 ATP10A PAPSS2 CDH6 GOLGA7B RBBP6 HAS2 HAS1 NPTX2 SLC16A3 MAP3K8 SH2B3 TECTB CPA4 TRAF1 KCNAB1 TNFRSF10B FOXN2 NFKB2 MAFF MYD88 ACTBL2 SP140L BIRC3 ANKRD33B PFKFB4 KCNE4 CDC14A GPR87 RLF ABL2 TXNDC5 PIM1 PIM3 C1QTNF1 IL13RA1 AL135905.2 LINGO2 KCNJ6 ITGA5 DTX3L TMEM255B ITGA4 GFPT2 ITGA2 NRG3 FOXL1 PTPN14 BICC1 TNFRSF1B DAB2 ARL4C BCL6 BCL3 CPM BCAR3 GAL3ST1 SHMT2 RASGRF2 PTBP1 DRAM1 KDSR BOC KRTAP5-2 EMILIN1 SKIL FNIP2 IP6K3 OVGP1 KCNH7 SMOX MYO10 KLF5 KLF4 PTBP3 ASXL1 PPM1D TRIM38 NPIPB9 RECK NPIPB7 NPIPB6 PRR5L THBD CCL7 NHS CCL2 TRIM22 SLC25A25 IL1R1 IFRD1 RUNX1 MFSD12 APLN JMJD6 TM4SF1 MALL CCDC80 CTH TRIM14 SMIM41 EPHA2 TMEM87B SP100 GORAB IL27RA ARNTL NCLN NUAK2 CCNL1 SLC12A8 EGR2 ARRDC2 GADD45B ARRDC3 PLA2G4C PLA2G4A PAPPA RAB27B NUAK1 HLA-E IFI44 CDCP1 PARP10 WNK4 INTS6 SPDYA AC073610.2 PTGES GRB7 SLC22A3 CREBRF JMJD1C ZBTB2 PCDH15 NBPF26 ICAM1 ART4 INSYN2B IFIT3 HELZ2 ARSI HIVEP2 PDK4 HIVEP1 PPP1R10 CD14 IL11 BTN3A1 NCOA7 NXPE2 VEGFC LIF NBPF10 AMPD2 SLC35E1 PDCD1LG2 NBPF14 OSMR IL1A NBPF19 IL1B TG P4HA1 TOX2 FJX1 SGK2 TLR4 SGK1 CSRNP1 PXT1 USPL1 TRAM2 FAM43A STC1 STC2 PTPRN PCSK9 NEDD9 MEDAG SOCS3 SBNO2 UGCG PCF11 NPC1L1 TNFAIP8L3 PCK1 AC008770.4 IL33 LIMA1 NR6A1 PDP2 PER2 TPST1 PER1 F2RL1 CMPK2 CD44 CARS1 ERRFI1 SELPLG SLC43A3 PTGER2 AMIGO2 TOR4A SLC20A1 SH3RF1 SERTAD4 POFUT2 CXCR1 RSRC2 PTCHD4 IFNB1 MGAT1 LMO2 CA12 H2BC8 GDF15 OSM TRPV2 ARHGAP26 IFI44L DOK2 SPOCD1 DOK5 FAP TGFBI CASS4 LRP11 ULBP2 PDE7A GALNT12 GALNT15 CD83 SUCNR1 CRTC2 HFE ARID4B SLC1A7 RELB LOXL2 NDRG1 LOXL3 NT5E GRIP2 TBC1D15 MICB SLC30A7 POSTN NABP1 INHBA LAYN SELE GEM CKAP4 NR4A3 NR4A2 ISG20 LOX TMEM119 TAF4B TGIF2-RAB5IF CDH16 CABP5 LPL ARHGEF28 SLC2A1 SLC2A3 PLAT SLC2A5 CSF2RB NR4A1 SLC2A9 RGS4 PDZD2 UAP1L1 SNIP1 PMAIP1 MLKL TGM3 HS3ST3B1 SRGN HSPA6 MRGPRX2 BNIP5 NFKBIZ SSTR1 OAS1 H2BC18 CLK4 PYY BMP6 NFKBIA CLK1 IRF1 C7ORF61 IL6 ELF3 OAS2 AGAP6 OAS3 IRF8 SPOPL IRF7 NFKBID BMPR1B CXCL8 SMIM3 CHD7 TNFAIP3 CXCL2 CXCL1 AFF4 CHD2 CXCL3 CHD1 HAPLN3 DBP FAM83G HRH1 IRAK2 LRP5L CASP4 ADGRE5 SNAPC1 CA9 CFAP43 CFAP45 PTGIS SPEN TMED7-TICAM2 TPBG ANXA10 PLAUR OOSP3 KCTD5 PDE10A GREM1 SPRY4 LTA CRY1 INA PTX3 HLF LDB2 MVP RB1CC1 KANSL1 ACVR1C MYRFL RND1 CIART SAMHD1 FLCN IL1RL1 SPRED3 SPRED1 RPS6KA1 CLMP SIX4 CHSY1 ZPLD1 Mock v SARS-CoV-2 24h liver-organoid GSE151803 down HEXIM2 GAMT ENDOG HAGHL GLYCTK C12ORF73 COMTD1 PRKAB2 MEX3D TMEM82 SLC5A9 LOC730101 AC074286.1 ARMC5 UQCRC1 CYP1A1 GALT ZNF276 LCAT ABAT TPRG1L GPR153 JHDM1D-AS1 PRAP1 KIAA1324 SNCG FBRS CSRP2BP ABCA2 CHST9 SIGMAR1 LOC101928303 ZNF142 NAPSA TIGD5 PRKCD ZNF383 CYP4F3 NR0B2 PDZK1 NR2F6 NUDT16L1 HCFC1 GJB1 RNF208 CLPP SFXN5 C19ORF24 PRR12 PP13 DOCK9-AS2 PDGFA VPS26B PLA2G6 LOC101928433 ALKBH7 OPLAH SULT1A1 FDXR KCNMB3 SNORA33 ZBTB7B TMEM8B UPF1 SIRT5 JOSD2 TMEM175 C1ORF21 LOC102724562 TMEM37 NCOR2 ADI1 PQLC2 PQLC1 GNPTG LYRM7 PXMP2 PAH CCDC7 ZNF358 GPRC5D ZNF234 FAM86HP ZNF592 FAXDC2 ZNF44 MRPL38 ECHS1 PRDM11 VSIG10L MRPL34 TMEM169 MRPL41 CEMP1 MEF2C APC2 PPARA CLUH DGAT2 DGAT1 MAMDC4 GSTO1 PGAM2 NR1H3 MBD3 SLC39A11 SCAF1 FMO5 GUCA2B KIAA0195 RNF125 NUDT22 SPSB2 MCF2L-AS1 ZNF219 PKN1 PTPRCAP RNF123 OAT NAPRT1 SCARNA12 NOTCH2NL LOC202181 LOC101928595 GLI4 PDF TP53TG1 FADS6 SULT1E1 SMPD1 METTL7A MLYCD TMEM38A SLC17A9 HS1BP3 NUDT16 FBXW5 ANKRD29 AKR1E2 PPP1R16A UCKL1 CHERP LOC101927279 FOXP4 YIF1A SDCBP2 SKI PINK1 DMWD PCNXL3 SLC25A34 CRAT TOR2A SLC27A2 OXNAD1 DGKD AGAP11 LOC101927044 C1ORF115 SLC9A1 RAB26 NRAP MFN2 SLC25A42 SH2B1 ACSS2 SH2B2 SEMA6C ESRRA MYPOP OSBPL7 PCYT2 WFS1 OSBPL5 RITA1 C1ORF220 POLRMT LRRC45 ABHD15 MED26 REEP6 MLXIPL NPHP3-ACAD11 SLC27A4 ZNF775 PIN1 SLC26A1 ZNF512B NELFA KMT2B IRS2 KMT2D INSIG1 FBXO27 C1ORF56 ABHD12 AMDHD2 TCEANC PLXNA2 ZNF768 EVI5L BMF CEBPA-AS1 SLC2A4RG HMGCS2 KCNIP3 NIPSNAP1 ZZEF1 PCCB BCL2 ITGA7 LOC728743 AHDC1 SLC25A1 BCAR3 DAGLA UBR4 FBXO44 CYP3A5 ATP5D KLC4 RDH12 VPS51 ZNF628 C8ORF82 E4F1 UGT2A3 RDH14 NADK CNGA1 UGT2B10 MYO16 FOXJ3 LOC102723775 AKR7L SORL1 FBXL15 C15ORF37 SELENBP1 LOC102723779 MGAT4B QTRT1 RAB17 SLC25A10 CEBPA HDAC6 MCMDC2 PLEKHH3 FRRS1 ARRB2 TTN CECR5 HECTD4 PRADC1 POLR2E DCAF11 SLC25A25 POLR2M SNORD32A ACTN4 ECH1 ADHFE1 LOC92249 CTNS DLEC1 MAPK8IP3 UBAC1 PEX14 FLYWCH1 NSMF TMCC3 MXRA8 ULK1 PEX11G NEIL1 GLS2 SNORD45C WBP1 PANK1 SLC46A1 AQP7 UQCR10 LRP3 AKAP6 UQCR11 FRAT1 C3ORF18 FZR1 HERC2 LOC102723845 OGFOD2 OXER1 FAM63B RAB11FIP3 SRPK3 LOC100506639 CMBL NARFL IL17RC BTD FCHSD1 TMEM220-AS1 POR ARRDC3-AS1 SDC1 MON1A MEP1A ADCK5 GCDH NECAB3 VARS SLC45A1 ECI1 SLC35D1 PIEZO1 NAGPA ZNHIT2 MARC2 ZBED3 PIEZO2 HIST1H3H SCARF1 NADK2 TNS3 PDK2 DECR2 IZUMO4 ZHX3 LINC00174 BMS1P2 KRT13 TMUB1 DERA LAT2 CLDN16 RDH5 FAM20C ALDOC SGK2 MEGF9 RHOU LINC01138 COL18A1 ACY3 CCDC107 KHK PCSK4 SEC14L2 SLC22A17 DND1 DGCR6L SCAP TMED4 SCAND1 CD36 SPTBN2 MAP4K2 CBR1 ATP6V0E2 SDCBP2-AS1 UBALD1 SORBS3 ANO8 MIB2 SGSM2 NUDT8 LBX2-AS1 FAM195A TSSK4 C21ORF2 APBA3 LPPR2 AMIGO1 DHRS11 RP4-756H11.3 SLC43A1 FAM69B C17ORF59 ZDHHC8 PEPD COX5B HYAL1 STBD1 RAC3 ACADS G6PC PHYH FAM3A SDHD TRPV1 KLHL25 RUNDC3B RPP25L BOP1 GLTPD1 FAM161B DOK7 CRYL1 SPNS1 OTC ABCG2 KLHDC9 CRTC1 CCBL1 RFNG PEBP1 ARHGAP39 ASB13 PBLD ARHGAP35 RXRA RAB40C CASKIN2 HIST1H2AE EMC6 TBC1D17 GAS2L1 ZGPAT LYNX1 HGD MPST EPHX2 DOLK LIME1 GLTSCR1 ACSF3 NAT6 NKAPL SELO UBE2Q2P1 CLASRP CARD14 ACBD4 LOC646021 MXD4 VCL FGFR2 RTKN CPLX1 KLHL17 TACO1 ESPN LTBP4 ACRBP TMEM220 SLC2A8 CCNB3 AKR7A3 SH3GL1 CYC1 ACAA1 LOC100288846 CYP2J2 SETD1A ABCC6 IRF2BP1 DAK COQ6 GRHPR CLCN7 NDUFS8 MMRN2 ACOX2 NDUFS7 HAGH FBP1 PAOX LPIN3 AC011747.7 MAST3 SLC3A1 PDLIM2 DPP7 MFSD7 CPT2 FAHD1 POLN DCXR LMTK3 TIAM2 TBC1D2 WEE1 CAT ALDH1A1 RPS6KB2 FMNL1 GNB1L ZNF815P THAP7-AS1 RANGRF DHTKD1 DDC PALM3 AQP11 SLC22A18AS C19ORF73 ENDOV EVA1B PCED1A SNTA1 Mock v SARS-CoV-2 24h liver-organoid GSE151803 up MX1 LOC101928527 DEK TAAR3 UPF3B BTBD10 PSMB9 WDR78 GTPBP4 MTAP GS1-251I9.4 OSTM1 MARCKS LINC00649 CLNS1A RABL5 SNORA8 BACH1 HNRNPR RNF6 TFPI UACA APOL6 MSANTD3 TGS1 APOL2 MTA3 GBP3 APOL1 ZNF146 ZNF267 AFAP1L1 DNAH14 RPL41 PLK2 KLF10 DNTTIP2 MINA BAZ1A PHKA1 COQ10B ZSCAN16-AS1 PLSCR1 PLSCR4 MSL3P1 CEP63 PSME1 GNE ZNF136 CFB LYPLAL1 SET CDC42SE1 CFI IL10RB-AS1 BCL10 LOC101929761 MRPL18 ENO1 ALKBH8 HIF1A C3 ZC3H12A LYPD1 IER3 IKBIP TPI1 NSUN3 ANXA5 CCL20 TMEM171 GNL3 DIEXF VWA5A RNF149 TMEM33 ZNF833P BHLHE40 GPR128 CEP41 ZNF597 ACHE ARPC1A SERPINA1 ABHD5 RBM8A LITAF MRPL33 HSPB11 APOLD1 LDHA PANX1 CASP10 C6ORF57 SSR1 SSR2 RIPK2 ZNF222 ZNF582 UTP6 IFNGR1 STAT1 UTP3 KTN1 SERPINB8 LRG1 TMEM154 NUCB2 GOPC PIGR HSPA13 ERO1L IFIH1 PSMB8 ENSA SBDSP1 CHML HLA-DMA IKBKE ZIK1 SRSF12 SLC39A1 ATHL1 SUPT16H S100A3 FKBPL RPS6 TAP2 VRK2 GTF2F2 SLC9B1 SLC9B2 PNRC2 MRTO4 MSH3 MSH6 SRSF3 ZNF559 ZNF438 SNRPG IL6ST PDCD2 MIR210HG ZNF674 TMF1 ODC1 RUVBL1 NRAS USP1 LEO1 STX6 RBBP8 TXNL4B AC093391.2 MAP3K8 MFN1 SLMO1 IGFBP1 SLC38A2 SLC15A3 NEK6 IGFBP3 TTC21A LOC101929475 TNFRSF10D NFKB1 LRRC42 NFKB2 LSM3 MED21 LOC101927060 NCL CDC42EP3 LCN2 SP140L RSL24D1 BIRC3 IFNAR2 N6AMT1 FTO CD274 BLM NAB1 ANKRD12 TSACC FGF2 C1ORF54 LOC102724791 FAM204A LOC158960 APMAP TRIM69 PIM3 TXNDC9 IL13RA1 TRIT1 FUS GFPT1 DIS3 DTX3L TPRKB C15ORF57 DNAJC1 SYF2 FAAH2 BCL3 PSMG1 CDRT1 CPM MCM3 NSRP1 CNTNAP3 MCFD2 SHC2 CBWD5 APIP C15ORF48 KDSR C10ORF10 CEP290 SMIM11 MCL1 CCDC59 ERAP2 BPGM TSN RAB12 DBF4 SYT12 TRIM38 SNRPA1 BLZF1 CRP NCKAP5 TRIM31 SEMA3C SQRDL WDR89 TMA16 ARL13B PGM3 CCL2 TRIM21 CCDC50 TRIM22 PGM2 SSB IL1R1 GIN1 GOLPH3L RECQL PPA1 PLEKHA4 ZW10 PDCL3 NIN LPAR6 TMCC1 NEURL3 CCP110 LACC1 SUB1 ULK4 NEIL2 CCDC82 ALPK1 LOC101926907 LUCAT1 IFITM2 IFITM3 SP100 CPNE8 WBP5 TIFA UBE2L6 IL27RA PSMB10 LOC102723726 IFI16 CHEK2 MTHFD1L E2F3 TCEB3 B2M TIPIN ARSB APOBEC3F XBP1 SLC35C1 PLA2G4E EAF2 RAB27A SUCO C8ORF4 LCA5L HLA-E SRPK1 PARP14 PARP12 CWF19L1 TAGLN2 ACTRT3 RPS25 IL1RN MTRR LPGAT1 PWP1 PPP1R18 ANP32A FAM89A TSHZ2 IFI35 IFIT5 THUMPD1 BRCC3 IFI30 ICAM1 GSPT2 IFIT3 CCDC91 TNFSF11 MIPEPP3 KIF21B WARS BTN3A2 BTN3A1 NCOA7 PTGES3 TUBB NMI OTUD6B BTN3A3 KLHL5 OSMR CLDN12 PTMA POC5 TLR5 EEF1E1 TLR3 SPTBN5 TRAM1 ZCCHC10 HILPDA CETN2 SDC4 ZFAS1 C2CD4A STC1 CX3CL1 CTSS SOCS3 MAP1LC3B SNX7 CAP1 NPM1 IL32 FAM46C TMEM176A MRPS23 RANBP1 PARP1 TMEM176B PROX1 UTP11L PARP9 SPCS3 NEDD1 STK17A CCNE2 TTC5 NUPL1 CMPK1 FKBP14 FAF2 SLC20A1 TUBD1 ZDHHC2 ARNTL2 NANS PCDP1 RAB8B RARRES1 RARRES3 SPINK1 ERN1 TMEM138 UBXN10 LOC101927838 LOC101928927 BRWD3 STEAP1 PCNA RGS19 YAP1 SLFN5 ZFAND1 MRFAP1 DNAJC24 CWC27 ODF2L TAF1A C1RL FOPNL TGIF1 SPATA6L GCKR RP6-206I17.2 DESI2 NABP1 DSTN ARHGEF19 AP4B1 MKLN1-AS SDCBP EFNA1 DLGAP1-AS1 PRPF4 RFXAP OSTC SRPRB ERO1LB SYS1 RASGRP3 ETS2 DDX60 HIGD1A TGM2 SNORD17 UBD CBX3 GGH MMP3 SPATS2 GALNT2 PLA2G2A NFKBIZ FAM86B1 RPS3A TNIP1 PJA1 SENP1 ETV6 IQCH BMP6 SENP2 NFKBIA IRF1 IL7 ELF3 OAS2 IL8 RASA2 TMEM217 H3F3AP4 DNAH5 NNMT TNFAIP8 UBA6 TNFAIP3 CXCL2 NR2C1 TNFAIP2 CXCL1 RPAP2 CXCL3 CXCL6 PITPNC1 IRAK2 CASP7 CASP4 TMEM206 LPXN SNAPC1 CASP1 DDX18 S100PBP IL15RA THAP1 UFM1 CXORF38 TRIB2 RBMX DCTN6 NUP107 STEAP4 ASNSD1 DDX21 YBX3 RND1 OGFRL1 SPRED3 KYNU CHSY1 BMS1 SNORD56 NIFK IFT57 RBM7 RBM34 Mock v SARS-CoV-2 A549 Series2 GSE147507 down CHGA PRELID1 WDR83OS AHNAK2 SOX13 COMTD1 ZFYVE26 BTBD11 GRIN2C PTRHD1 EML5 RNF224 KIAA1217 COL1A1 DDX39A MEX3B CAPN10 TOLLIP TEP1 TRIP6 WDR81 CDK10 VIM ORAI2 CYB5RL DUS3L ASB1 JRK PDXK RETSAT RPL10 AHNAK AP5Z1 SERPINE1 TESK2 ADCY5 ZFYVE1 TPRG1L DLL4 NEURL1B GNG3 PREX1 DPYSL3 IGLON5 NXNL2 RALY HES6 VPS18 DMPK PLK3 SLC16A13 NR0B1 VPS37C PDZK1 FA2H GIGYF1 TBL3 PRKAR1B TCN2 FASN SAPCD2 KCNMA1 FAT1 ATG2A ITPA NOX1 CHST3 HOXB6 TSTA3 IPO13 RNPEPL1 MEPCE TEX22 TMEM91 LIPC TRIOBP FAM110A FDXR FASTK HMOX1 SFN PRIMA1 TMEM8B PTCH2 TET3 SIRT7 WNT9A FAM102A ITPKC GJD3 MZT2B MZT2A INF2 GPRC5C NCOR2 ADI1 GNPTG AGO2 PLEKHM1 PHF19 ADA FLII ABHD4 KCNC4 ABHD2 CLTB IQGAP3 CYB561D1 DDA1 BBC3 PANX2 AACS SHH TIMP2 CEMP1 ZNF469 ATXN1 HMGXB3 CIC AP1M2 TPRA1 MEF2D CDKN2C APC2 MBD3 SLC39A13 MRPL54 ADAM19 A4GNT COL4A2 COL4A4 ZNF219 DSCAML1 ENG ZNF575 MTMR11 SMG1 TGFB1I1 HTT PIGQ FSTL3 GLI4 LFNG SMPD3 NDST1 AIFM2 SMPD1 TSPO HS1BP3 NUDT17 P4HTM NUDT14 FBXW5 MAP3K3 RNF44 FBXW9 CORO2B BTBD9 FBXO10 SLC9A3 LRFN4 COPRS ACAP3 PINK1 MFNG ITGA11 RNF185 TCTA SQSTM1 TRABD2B PHLDB1 URM1 PPP1R15A KATNB1 BEST3 ACAP1 NPAS1 CDH4 NACC2 SLC16A8 NPTX1 STX3 NDOR1 PSKH1 PLEKHJ1 ZNF785 STOX2 ATP9A CCDC17 HPS1 TTC21A DYRK1B TNFRSF10D METRN KCNAB2 CYP4F11 ESPNL FRMD8 METTL22 DGKQ MAFG PGP MAP3K14 BCAT2 MAZ MSI2 ARHGAP1 SAT2 CORO1B RHOBTB2 PCDHAC1 SNN MPC1 AMDHD2 PMEPA1 C1QTNF6 THEM6 ANKRD11 SLC38A7 FBRSL1 PLXNA1 BMF ZNF524 SH2D5 SAC3D1 PRRT2 PTPN18 PRRT3 OSGIN1 NPC1 PTPN14 BAIAP2 TPCN2 CDK4 IL3RA TNRC6C L3MBTL1 NLGN3 POMT2 NDUFB2 FOXK1 RAP1GAP ADRA1B LBH DNAJB2 ADAMTS15 KLC4 PSAP MGAT5B DVL2 P2RY2 ACP6 AMH FNIP2 PGPEP1 SLC37A4 SLC36A1 COL27A1 PVRIG PLEKHG6 BOLA1 MGAT4B KCTD15 HDAC5 MDGA1 HDAC4 DYSF SYNE1 LENG8 CXXC5 TSPAN10 SYNE2 PPM1H REPIN1 POLR2A HECTD3 NAGLU PRADC1 HMG20B UPP1 CNNM3 EPHB3 UNKL SLC25A25 MLXIP SLC35A4 KRT4 IFITM10 ADHFE1 PLEKHA6 NBEAL2 PEX10 PLEKHA7 PPP2R1A MAPK8IP3 MFSD12 GCAT GSTZ1 SFRP5 RRAGD NEURL3 ULK3 NSMF MXRA8 ULK1 TLN2 OBSL1 STX1B PPP1R37 ATP6V0D1 ZNF324B WBP2 CERK TAGLN SSNA1 PPP1R3B LRP3 HERC2 HERC1 NIPAL4 CHAC1 SUSD5 CCDC78 SLC12A7 NUMBL SRPK3 SLC34A3 PLA2G4C VASN ARFGAP2 VAT1 IFFO1 STAG3 WNK1 IGSF9B TAGLN2 TTLL12 ADCK5 FBXL8 PEMT NECAB2 BEX2 ART5 TRPM2 KLHDC7A ANPEP INPP5E ANKH ZBED1 CEP170B TSPAN1 AKR1A1 RHOD ZHX2 VEGFB CLDN14 SGK2 RTN4R NOXO1 OTUD7A NEU4 ACTR1B C10ORF95 SH3PXD2A SLC22A18 NEU1 IDS DGCR6L FAM43B SNX8 LMCD1 ASIC3 CTSD PDRG1 ATP6V0E2 VASH1 THOC6 GAL PACS2 CARS2 LLGL2 RYR3 SYNM MEGF6 PAPLN DCST2 PEPD CAMKK1 PODNL1 AKAP13 MNT CILP2 SPTAN1 KIRREL3 CHRNB4 TRPV1 PCDHA12 PCDHA11 KLHL21 DOK3 GNPDA1 MZF1 FAM161B NUPR1 TP53I3 SCNN1D ATG16L2 POLE4 YPEL1 SPNS1 FIZ1 ABCG1 ISCU COL20A1 ALDH16A1 NDRG4 CRTC1 SLC1A4 SLC1A5 CIB1 LMNA PRSS53 RAB40A RAB40B TAF1C TMEM129 EP400 TBC1D16 SREBF1 ARHGEF18 GEM EFNA2 MATN2 CARD14 MXD3 MXD4 PXN RPS19BP1 SLC2A1 PLCXD2 ETS2 PLB1 RGS3 PODXL UAP1L1 FAM174B ALDH3B1 SIRPA MSC PRODH ATP13A1 SETD1B CYHR1 NAV2 GGN COQ4 CLCN7 RABEP2 LPIN1 COL7A1 QRICH2 PLEC COPE LTB4R PMF1 SMIM5 ABCB6 ARHGEF10L HAPLN3 MARVELD1 IRAK1 TMEM208 MYEOV LONRF2 WNT4 DACT1 CAD LSS ARID1B KCTD7 EEPD1 TRAPPC6A RPS6KB2 TBC1D7 IGDCC4 DDIT3 TRIB3 TELO2 MVK PKD1 RERE DCTN3 MVP CLN8 NADSYN1 FLCN SPRED3 NT5DC2 C19ORF71 PCDHGC3 Mock v SARS-CoV-2 A549 Series2 GSE147507 up C2ORF74 MX1 GLCE WDR75 BBIP1 DEK IFT81 REV1 DKK1 MED6 WDHD1 LARP7 RBP7 RBP4 SARNP FDX1 POLR3G HNRNPD FILIP1 RPL22L1 NYAP1 EHF SAMD9 STAU2 PON2 C4BPA CLDN1 APOL6 FLRT3 PSMD6 MXI1 GBP1 MTA3 GBP3 APOL1 BATF2 PRPF38B TIGD7 PLK2 KLF10 DNTTIP2 MASTL C9ORF64 SULT2B1 PLSCR1 PSME2 NOSTRIN CEP63 PSME1 CFB PTP4A1 SET CFH WDR43 RPL9 HIF1A SMC3 C3 C5 GJA1 LTA4H IER3 ANXA1 PNPT1 RDX ANXA3 PHF11 CCL20 GABRA5 TESC TCP1 FN1 CP GNL3 GNL2 MMP10 PIGK PAM ZNF239 NUP62CL SERPINA3 BTG3 ZC3HAV1 ZNF518B MRPL33 HSPB11 LDHA MIOS CEP55 ZNF467 TIGD2 HSD11B1 IFNGR1 STAT1 ELOVL6 STAT2 MBD2 STAT4 KTN1 ADAM10 PTGR2 SERPINB7 PSMA6 PSMA4 USO1 NUCB2 PLIN2 STON1 FSTL1 ING2 PTGS2 IFIH1 PSMB8 ZSCAN30 NAMPT RIOK1 AGR2 PRAME ZNF326 OLR1 PAIP1 PAIP2 PTPN2 USP8 SUPT16H ZNF680 TPM4 TFPI2 USP3 TAP2 TAP1 MSH2 C1ORF116 CLEC4E HAT1 TEX9 MSH6 ZNF558 SNRNP27 SNRPG ZFP28 ZNF430 SLC27A2 PHLDB2 CSF3 CCNT2 PLOD2 GTF2E2 TANK BZW1 HSP90B1 RNF31 RBBP6 HAS2 CDH1 LAMP3 GTPBP10 SLC39A8 SLC16A3 MAP3K8 LRRC49 IGFBP1 FANCI CCDC18 IGFBP3 FRMD3 MYD88 MLXIPL SMS LCN2 XAF1 SP140L MNAT1 UQCRB CUL3 AK3 CREM SAT1 EFEMP1 TPR THEM4 PI3 BRIX1 EIF5B KCNJ6 HSP90AA1 DTX3L EIF2AK2 EIF2AK1 ELAC1 PTPN12 NEMF CYB5A DNAJC2 DNAJC8 DNAJC7 PIR CEBPZ SERPINI1 NSRP1 SHOX2 SNAP25 MCFD2 SYCP2L FAM114A2 GMPS CBWD2 APIP NLRC5 MLLT3 DUSP16 C15ORF48 ORC2 PGK1 ZNF624 EIF4E B4GALNT4 SMIM13 ERVMER34-1 NOP58 REC8 CCDC58 ERAP1 SELENBP1 EHBP1 DNAJA1 SUCLA2 MYO1B EIF3J ESF1 TRIM38 BLZF1 ITGB1 SEMA3A C1R HDAC2 C1S FHL1 DDX60L THBD EXO1 SUMO2 PTER SUMO1 FIP1L1 CCL5 TRIM25 SLITRK6 TNNI3 CTNNAL1 TRIM21 KCNJ2 NCK1 UGT1A7 SSB SMARCA1 SP110 ANKEF1 PLEKHA4 ACSL4 EREG PML SMARCA5 CCAR1 ASS1 LAP3 TMCC1 IFI27 SLPI SUB1 TRIM14 ANP32E IFITM2 IFITM3 FGL1 IFITM1 SP100 WBP4 TRANK1 ITIH2 UBE2L6 HERC6 HERC5 HERC4 CHORDC1 IFI16 CCDC77 B2M GINM1 XRCC4 EAF2 HLA-C PLA2G4A PAPPA HLA-B IFI44 HLA-F PARP14 PARP12 CDCP1 PARP10 INTS6 DHX29 INTS8 VEZT LTV1 PDE1A IFI35 IFIT5 IFIT2 IFIT1 ICAM1 GSPT2 IFIT3 TMPO GOLGA4 HELZ2 CCDC91 NUDCD1 PPAT PDK4 TNS4 EDN1 SLC10A7 CCDC117 TSC22D1 NCOA7 NMI AP3B1 RHOB IL1A BST2 IL1B P4HA1 THEMIS2 ID1 KRT18 DMC1 ALDOC SLU7 EBI3 STC1 C2CD4C CTSS ZMYM2 HLTF MAP2 SOCS6 TM4SF20 MAP4K3 MMD IL32 NFYB MTX2 CCNYL1 SUSD2 THOC2 CACYBP TTC1 UBE2E1 KIN THOC7 PARP9 STK17A XPOT CMPK2 SAA1 ERRFI1 PTGER2 FKBP14 AKR1B1 PRIM1 ZDHHC6 TXLNG PNMA2 RSRC2 CCT8 AKAP10 ANKMY2 CD55 RARRES1 CA11 MORC4 PTCD3 CPSF3 CWC15 CNOT10 TMEM130 DPM1 ARHGAP24 IFI44L ZNFX1 SLFN11 SHQ1 DNAJB11 PPIG STEAP1 PCNA TYMP ZCCHC7 ODF3B HSD17B4 BCCIP IFI6 SAMD9L NOL7 TMEM123 TAF1D CWC22 DNAJC21 BMPER MORC3 PDIA3 USP48 DDX58 SYT1 USP44 CKAP2 ISG15 TDRD7 TBCA DDX50 EIF2S1 ISG20 STT3B TAB2 DDX5 CTTNBP2 DDX1 LGALS3BP CACNA1G DDX60 FAM162A USP53 ZC3H15 KRT222 MKKS PAICS HSPA5 SPATS2 CBX1 HSPA4 OAS1 GPCPD1 NFKBIA IL6 OAS2 CPS1 OAS3 NUP54 IRF9 MNS1 IRF7 GRSF1 FAM72D LUC7L3 SMIM3 NNMT UBA7 BCL2A1 PSIP1 TNFAIP3 CXCL2 CXCL1 RPAP3 ADAR CXCL3 RPF1 CXCL5 NT5C2 CASP8 LLPH CASP7 AOX1 PDE4B SNAPC1 CA9 PDLIM5 FGA RBM39 FGB FGG ZNF184 KCTD6 SOD2 U2SURP GREM1 FAM131B TRIB1 USP16 ERCC6L PCDHGB4 DDX21 PPP2R2A USP18 OASL SAMHD1 EVA1C KYNU BNIP3 Mock v SARS-CoV-2 A549 Series5 GSE147507 down HEXIM1 DNAAF3 PASK DDX39A HNRNPL WDR81 HSPA1A C19ORF47 RABL6 ASF1B HSPA1B NCAPG NCAPH IER5L WDR62 CLDN2 TOB1 SPDEF NTHL1 PSMD3 RRP36 AP2S1 GTSE1 SAMD11 VPS18 FDFT1 ICMT PLK1 NR2F1 NR2F6 HCFC1 DHFR FAM111B TBL3 FASN SAPCD2 BIN1 VAMP1 SFXN5 SIVA1 PRR15 EZH2 HOXB6 POP7 GLDC CDCA3 TTYH3 CDCA5 TMEM97 ENO3 TSKU CHTF18 RAVER1 FDXR FASTK NUP62 MYO18A RHBDL3 MYBL2 SDF2L1 TCF19 SNAPIN LYPLA2 JUP ANXA6 EMP2 IFT122 CDC6 WDR34 TAF6L INF2 MMP15 FAM222A ADI1 INCENP CENPO ANKS4B PHF19 SLBP PIF1 TMEM160 NOC4L SERPINA6 ACAT2 TK1 RHPN1 PACSIN1 AP1M2 ATAD2 CDKN2C CLUH DGAT1 MBD3 TUBB4B TUBB4A BAAT ADAT3 APEX2 TAOK2 ZNF219 CKS2 NCAPD2 PKN3 NCAPD3 CACTIN MYRF TIMELESS ZNF574 LRRC14 PIGQ TMEM53 NOC2L PRSS23 UNG SMPD4 PDF RECQL4 HLA-DMB NSDHL TUBA1B OLFML3 ANKRD54 CKB AGR2 METTL7B FADS2 ZNF444 RNF43 USP5 PPP1R16A DIO2 PCDH9 CDC25A RNF40 TUBA4A DISP2 SLC25A39 C1ORF116 HAT1 ITGA11 LY6E SNRNP25 DHCR7 KANK2 ZNF672 RAB1B RNASEH2C PLXND1 SRRT GPS1 SRSF2 UCP2 MPV17L2 KATNB1 HJURP CLU TUBB6 BCL2L12 NACC1 RAB26 RUVBL2 NPTX1 SLC39A3 NDOR1 ZNF787 KPNA2 C21ORF58 PCYT2 WFS1 FANCA METRN POLRMT LRRC45 SLC9A3R1 FANCG PITPNM1 KIFC1 BIRC5 ERF PGP TROAP MAP3K11 SLC27A3 MAD1L1 DNMT1 PIN1 RAD9A LRRC59 ZNF771 GMNN CNP PHB IPO4 PKMYT1 FOXM1 HSPBP1 VTN EDC4 CHAF1A CHAF1B MPC2 BAG1 C1QTNF6 THEM6 MAP2K6 CYB5B RFC5 HSP90AA1 GPX2 RFC3 HMGCS1 NEB DHCR24 AHSA1 WRAP53 ESPL1 MCM4 MCM5 SP9 MCM6 MCM7 MCM2 KCNK5 MCM3 SLC25A1 AARS2 GTF3C5 NDUFB7 SHMT1 MCM10 ADRA1D EFCAB12 C1ORF159 RAP1GAP GTF3C1 RHOT2 PPP6R1 MROH6 ORC1 SPR MGAT5B AMH CCDC34 DGCR6 BCAS1 NTRK3 GADD45GIP1 MMAB MBOAT7 RNF26 SPAG5 NDUFA3 HAUS5 FBXL19 CABLES2 PRC1 SELENBP1 TBX3 DNAJA1 TST SLC25A11 DTL SLC25A10 ANAPC2 CDCA7L EPHB6 UNC93B1 UHRF1 KIAA0895L TCIRG1 CXXC1 U2AF2 ZBTB45 CXXC5 NRGN USH1C FOXRED1 WDR90 REPIN1 CDC45 EXO1 PUF60 PRADC1 POLR2E TRIM26 TRIM28 INSL4 EPHB3 POLR2L CD320 BRI3BP SLC35A4 IMP3 ESCO2 ACTN4 KRT4 SLC12A2 TM4SF4 AP1B1 KRT8 NBEAL2 JMJD8 CDC20 MTUS1 SFRP4 KIF20A PFN1 ATP6V0D1 SSNA1 SLC23A1 CCNF LRP3 HS6ST1 TONSL DHX30 NCLN SNRPD3 RAD54L E2F1 PEG10 ZNF703 EXOSC4 E2F7 E2F8 HABP2 INTS1 XRCC3 PAQR4 ALG3 MIF TUBG1 IFFO2 TPX2 POR INTS5 RNPS1 NOL12 FBXL6 APOBEC3B MAGED1 MRPL4 KLHDC7A SNRNP70 PDK2 AMPD2 ZWINT MLF2 VAV3 TPPP3 RPUSD1 KRT18 TECR CALR DTYMK DHX9 MRPS12 SUV39H1 GPAA1 PCSK9 KIF12 KHK DGCR6L HNF4A SCAND1 TM4SF20 MPP2 CBR1 ATP6V0E2 CACYBP VASH2 THOC3 ZDHHC12 SPC24 CCNE2 TACC3 MAPRE2 LLGL2 SPC25 FEN1 FOXA1 TOMM40 SYNM MKI67 NUBP2 FCGBP HYAL2 NUSAP1 GINS2 GINS1 SCARA3 SCARA5 LIG1 CPSF1 GINS4 ARHGEF39 ALYREF NOSIP SHPK SDHA ALDH4A1 BOP1 DOK4 UBE2S UBE2T GPRIN2 PRR15L ALDH16A1 PCNA GEMIN4 AURKA PEBP1 TYMS PHRF1 ZFP36L2 AURKB RASD1 CCND3 GPC1 CASKIN2 MYH14 IGFLR1 EMC6 GAS2L1 SREBF1 FDPS ATP6V0C KIF22 DDX54 TBCD INHBB UPK3B KIF18B RADIL THOP1 KIF2C FGFR4 MXD3 ARHGAP18 CACNA1G ETS2 CPLX2 HOXB13 NR4A1 CNN3 PDZD3 CCNB1 EBP TMEM104 CLSPN CHMP1A MUC13 TMEM109 HSPA8 CBX2 AXIN2 IRF2BP1 TICRR HPDL GALK1 POLA2 CPS1 PDE3A IDI1 ABCB8 LMNB1 NCALD PIK3R3 DBI LMNB2 TMEM201 MFSD5 MFSD3 GMPPB ISOC2 FAM83D RBM14 DACT2 RRM2 CLEC11A LSS THAP7 CAT RBM42 MVD TELO2 AURKAIP1 MVK ERCC6L THRA BRAT1 DBF4B EHMT2 EMC10 SLC4A2 SLC22A18AS CLN6 NT5DC2 POLE IGFBPL1 POLD1 Mock v SARS-CoV-2 A549 Series5 GSE147507 up HOMER2 SYTL2 C20ORF194 GTPBP2 L1CAM ABCA10 ADPRM MTHFD2 FEZ2 GPD1L NHLRC3 NGEF OPTN TES ZNF277 ATF3 SERPINE1 COL12A1 SERPINE2 TFPI CLDN1 APOL6 MSANTD3 TMEM67 AKT3 MXI1 ZDBF2 CHST11 PXDC1 CYP1B1 GBP1 ST3GAL1 EXPH5 GBP3 GBP2 ZNF146 GBP4 PRKCH KLF11 GABARAPL1 ABCA1 DNAH17 RAB3IP PRKCE NR1D2 EIF1 FOSL1 KCNMA1 HOXB9 ATF4 CFB LYPLAL1 C9ORF72 ZBTB8A PLEK2 PDGFB PDGFA WDR41 ALKBH8 ZNF25 PPFIBP1 C3 GJA1 ZC3H12C LIPH NKX3-1 IER3 DUSP5 JUN ANXA3 DUSP1 CCL20 EMP1 SAMD4A JOSD1 MMP10 PXDN CCDC90B COL22A1 SERPINA3 BTG1 PEAR1 TMEM168 ATXN3 RRAS2 TCP11L2 SERPINB4 IFNGR1 IFNGR2 SNX24 ELOVL7 SERPINB8 DHRS2 SERPINB7 TMEM156 CLIP4 TMEM159 ADAM17 MAP1B NDUFA4L2 TOM1L1 HBEGF CLDND1 ZNF697 TIMM9 C11ORF54 PRKAG2 FSTL1 HSPA13 IFIH1 FADS3 ZNF449 OLR1 CSGALNACT2 CSGALNACT1 PTPN2 PHLDA1 AGTPBP1 GK ANKRD28 PPIL3 VRK2 FOXP1 CLEC4E SLC9A7 PSAT1 ADM2 ZNF558 AJUBA GOLGA8B SLC25A37 RHCG PPP1R15B ALDH1L2 PHLDB2 CSF2 CSF1 CEP120 PPP1R15A THG1L BEST1 FGD4 FGD6 CDH4 ABLIM3 CDH2 GTPBP10 FLNB SLC16A9 GRB10 SLC16A4 KCNH1 SLC38A2 SLC38A1 F2R TRAF1 TNFRSF10B IBTK NFKB2 FBXO32 MAFF FRMD6 SPIRE1 BCAT1 RSL24D1 SPRN BIRC3 BEAN1 TMEM167B FAM228B SAT1 FGF2 EFEMP1 GLIPR1 SALL4 SESN2 CPAMD8 ABL2 TNFRSF9 MBP C1QTNF1 ROS1 SEMA7A ZNF641 GFPT1 ITGA5 DTX3L ITGA3 GFPT2 ITGA2 ASNS CFLAR PTPN12 NPC1 FOXL1 CDK7 CDK6 IL3RA DSG2 OGT SERINC1 CPM NFE2L3 ZC3H6 FAM149B1 BNC2 RASGRF2 C3ORF52 ITPR3 FHIT UFSP2 C15ORF48 DRAM1 DRAM2 KDSR ZNF507 LBP TRPC1 DNAJB9 B4GALNT2 KIAA0319 ZNF621 LIMCH1 SMOX ERAP1 KIAA1549L TM6SF1 ZFP90 KLF9 KLF7 KLF6 TXNIP TRIM36 CLEC2D PLEKHG1 EIF3E ITGB1 C1R C1S FHL1 CEBPG SEMA3C DDX60L CCL5 IGF2BP2 ITGAX CCL2 ITGAV LRRC8C FYN UPP1 CTNNAL1 CCDC50 UGGT2 EPHB2 NCK1 EIF2A PCDH1 ACVR1 IFRD1 TTC39B EREG RUNX2 ASS1 THEG RRAGD RRAGC LACC1 RTCA UHRF1BP1 RIN2 ALPK1 TMEM87B ANTXR2 NTN4 NIPAL4 MTHFD1L CHAC1 STK38L APBB2 N4BP3 GADD45B GADD45A PLA2G4C ARRDC4 SLC6A15 RAB39B HLA-B ANK2 IL17RD PARP14 EXT1 PARP11 OCLN CDCP1 BEX2 CREBRF ICAM1 MT2A CYP4V2 HIVEP1 KIF21B TSPAN2 IL11 IL15 NCOA7 TSC22D3 HEG1 LIF AMPD3 SORCS2 IL18 TUBE1 KLHL5 OSMR VAV1 VEGFA SUPT3H PDZK1IP1 PTPRE IL1A CLDN12 ARHGEF2 CLIC4 EBI3 SDC4 NMD3 STC2 TGFA VLDLR SLC7A11 CTSS SOCS3 UGCG MAP1LC3B KIF1A CLTCL1 MAP2 DPH5 PHGDH PCK2 SOCS6 CDV3 IL32 QPCT UBE2E1 GFRA1 PARP8 PDP1 DPY19L3 XPOT DLC1 NEDD4 F2RL1 TCEA1 CD47 ANKRA2 MAPRE3 ECM2 ICA1 ARNTL2 AKAP12 XDH CD55 UBE2H KIRREL3 MID2 EEF1A2 SPOCD1 AXL TMX3 COL5A1 CCPG1 CHMP4C ULBP1 SCG5 YPEL5 CD68 RAI14 TYMP GALNT12 ZCCHC7 BTF3L4 SLFN5 ZFAND1 NALCN ASAP2 SAMD9L RELB CLGN DOCK11 NT5E TAF1D KIF5C BMPER MEIOB SMAD3 SYT1 NABP1 RAP1GAP2 INHBE EIF2S3 CCNB1IP1 AZIN1 DLG3 MXD1 CD8A CAPRIN2 DNAJC10 CREB5 MATN3 AKNA PYROXD1 SH3KBP1 PLAU HTRA1 ETS1 SEL1L3 LTBP2 RASGRP2 DDX60 PODXL NMRK1 MAN2A1 PMAIP1 USP53 SBF2 TIPARP VDR SRGN SMURF2 LAMB3 HMGA2 NAV3 NAP1L1 LAMB1 TNIP1 GPCPD1 IL6 JMY R3HDM2 RBMS3 KDM5B MCTP1 TSEN15 BCL2A1 TNFAIP3 LAMC1 FUT1 CXCL2 TNFAIP2 LAMC2 CXCL1 PLD1 CXCL3 MOSPD1 CXCL5 SGPL1 HRH1 SYNGR3 IRAK2 AOX1 CA8 LONRF1 KDM6B CCBE1 ZNF185 SWT1 DDX10 PLAUR SOD2 GALC FMNL2 THAP6 GREM1 UFM1 NPHS1 ALDH1A3 IGDCC4 DDIT3 DAAM1 PDE5A PTX3 CHURC1 TRIB3 SCARB2 TUFT1 CRMP1 ATP2A3 DMKN RND3 SLC4A7 OGFRL1 CBS CLMP LRIG1 HORMAD1 POLI DUS4L CYTH1 Mock v SARS-CoV-2 Caco2 24h polyA GSE148729 down CDK18 SND1 POLR2J2 GLYCTK CADM1 RPL17-C18ORF32 GPR160 XPNPEP2 RBP4 CD9 GPR161 UQCRC1 C2ORF72 PI4K2B ZNF395 MTMR4 RETSAT C4BPA CLDN3 ACCS DCAF7 SULT2A1 PRSS8 S100A14 WLS S100A10 EPSTI1 ABCA2 GSTK1 TSPYL1 FZD4 ST14 PMM1 SERPINF2 STARD10 NR2F2 BLOC1S5-TXNDC5 PDZK1 PBX1 DHFR ACE2 SLC6A6 GJB1 COL2A1 BCAM TDP2 SFXN5 PSME1 CFB ANAPC16 PHYHIPL GNS LYPD6 HACD3 ADH6 TMEM187 C3 ADH5 NYNRIN SCP2 TMEM200A ZNF488 PRKACA ANXA4 DUSP9 TMC4 MMP11 GLUD1 TMEM37 SLC7A7 ADI1 PXMP4 TMEM106C PAM SERPINA1 ABHD4 RPN2 ABHD2 TMEM164 SERPINA6 SULT1C4 LDHB SULT1C2 TIMP2 AP1M1 HAVCR1 AHSG MGMT SLC2A11 DGAT1 G0S2 SLC39A14 PRSS35 TMEM59 HADHB DHRS7 COL4A1 PSMA2 RGN TSR2 NCAPD2 LAMTOR4 SLC29A4 SMTNL2 FABP1 OAT CCL15 PIGU GRN QPRT GCNT1 HTT GSTP1 ADAM22 AFP TMEM141 PHEX NDST1 FCGRT ING4 METTL7A CKB NKX1-2 ANXA9 AGR2 TMEM14A GSN PLXNC1 F10 USP5 GPT2 SEMA4G AGT HIC2 LY6E ERP29 NPTXR CRAT SLC27A2 RASL11A C1ORF115 PAPSS2 FGD3 SLC39A7 SLC25A42 SLC39A5 SEMA6C BNIP3L KREMEN1 SYS1-DBNDD2 SLC9A3R1 ABHD15 REEP1 ARMCX3 REEP6 TPP1 TSNAX-DISC1 PCYOX1 RAB5B SLC26A1 EXOC3L4 SLC26A2 CLSTN2 SLC38A10 AK4 SAT2 CORO1B TM7SF2 VTN SESN1 SLCO2B1 MPC2 C1QTNF6 PI3 HACL1 GYG2 PLS3 SLC37A1 KCNJ8 HMGCS2 HMGCS1 EIF2AK1 DHCR24 NIPSNAP1 TMBIM1 ALB APOA1 TMBIM6 ACO1 SERINC5 SLC25A1 FAM114A1 KNG1 KLC4 P2RY6 PSAP P2RY2 PGK1 UGT2A3 B4GALNT2 D2HGDH SLC37A4 SMIM14 AMN COL27A1 PLA2G12B PLEKHG6 ERAP1 SPDYE5 HAUS4 CABLES2 SORL1 TBX4 SELENBP1 TPD52L1 PFKL RAB15 APOC3 NECTIN1 UGT2B7 CEBPA SRC ETFA ETFB HSD17B14 TSPAN13 PBXIP1 HSD17B11 USH1C TTR GANAB SCRN2 TRIM29 ARRB1 GM2A WDR6 UGT1A6 DCAF11 CNNM3 PGM1 ARL15 ECH1 FBXO2 ASRGL1 MFSD10 FRAS1 SOAT2 ZG16 KIF20A SUCLG1 ALPK2 OBSL1 CALM3 SLC35B3 WBP1 LRP2 CMAS LRP1 KDELR2 PLEKHB2 CALML4 AKAP7 CARHSP1 NTN4 STS HERC6 C4B CPNE1 B2M SEPHS2 RAB11FIP3 RAB11FIP4 COX8A PAQR8 TMEM50A ST6GAL1 SMLR1 SLC11A2 IGF2 IL17RE CYP27A1 TAGLN2 SDC2 MEP1A APOBEC3B CFTR PLPP1 APOBEC3C NECAB3 BEX3 SPON1 MAGED1 HDAC10 ARL6IP1 MAGED2 LGALS3 LGALS2 CYP2R1 FTH1 TSPAN8 APOH RALGPS1 GLUL ZBED1 APOE TSPAN3 A2M TSPAN1 SKP2 APOB CTSB BBS2 CDSN AKR1A1 VAV3 TF UGDH ALDH6A1 CCNG2 FAM20C CCNG1 COPG1 TFF3 TFF1 CALR PDZRN3 MEGF8 DDR1 GUCY2C DAZAP2 TRAM1 SLC44A3 TMPRSS2 FITM2 GPAA1 CROT CTSV KRT20 NEU4 ZMYM3 NEU1 ORMDL3 HNF4A CTSH PHGDH ATP6V0E2 SORT1 AKR1C2 AKR1C1 ANO9 CREG1 AKR1C3 NOL4L KIF26B NBR1 TJP3 NRP2 DHRS11 ORM2 CD63 GBA PEPD CPN1 RBBP8NL SPTLC3 OS9 MKRN2OS CDX2 HSD3B1 APLP2 KLHDC2 ARID3A SDHD SPINK1 MUC3A GLTPD2 EEF1A1 ILVBL GPD1 COL5A2 GSTA2 GSTA1 CRYL1 SLX1B PRR15L ATF6B SLC1A1 HAAO HFE HSD17B4 SLC1A3 PRUNE1 ATP1A1 AMOT NDRG1 PTPA RXRA PAK1 TMEM129 MYH14 GPC3 GPC5 NDUFV1 OPN3 SREBF2 IDH1 PCYT1B HGD LRRC75B EPHX2 TDRD7 DNAJC15 TMEM230 ACSF2 MAVS AMACR COL6A1 TMEM9 FAM151A CDHR5 ACBD4 CDH17 MFGE8 FGFR3 MXD4 VIL1 FGFR2 COPB2 SPPL2B KLHL13 ESPN DNPH1 SCGN EBP UBB ALDH3B1 AC012314.3 ACAA2 AC012314.4 ACAA1 GGT1 PRODH AC012314.5 AC012314.6 PSPH HGSNAT ABCC3 GGH RBL2 ALDH18A1 MAN2B2 MAN2B1 MANSC1 FAM72C SHANK3 TMEM45B H6PD PMF1 ABCB6 SLC3A1 EHHADH DTX4 SLC40A1 ARHGEF10L DPP4 HAPLN3 CNPPD1 CPT2 TMEM205 ERBB2 ERBB3 UQCRFS1 CA8 VILL FGA FGB FGG DAPK1 RRM1 CLDN7 SMUG1 SNTB1 PNKD ALDH1A1 SCLY MVD GALM RBM47 DHTKD1 SCARB2 DDC LAMA3 THRA LAMA1 ACVR1B CLN3 HEPH PCED1A SAP30L EPS8L2 Mock v SARS-CoV-2 Caco2 24h polyA GSE148729 up AFAP1 RC3H1 GATAD2A CD3EAP FRS2 GTPBP4 L1CAM RNF103 FAM133B CPEB2 POLR3G VIM CYP1A1 CPEB4 ASB3 ASB2 ZNF398 ATF3 ZNF274 MT-CO2 SERPINE1 AVIL IER5L MT-ND1 NWD1 NWD2 MYC UBASH3B HES1 ALOXE3 RNF111 ZNF267 KLF11 ZNF264 JAG1 TSPYL2 PRPF38B STARD13 PLK3 PLK2 KLF10 DNTTIP2 NR1D1 INO80 C12ORF50 ZNF14 FERMT1 LATS2 FOSL1 FERMT2 LATS1 SETX KDM7A ZNF131 TRIO ZNF625-ZNF20 BCL10 WDR43 BAZ2B ELK3 ZC3H12A PIP5K1A IER2 SFN JUNB IER5 MYBL1 IER3 DUSP5 NSUN2 DUSP6 ZNF121 ANXA1 JUN DUSP4 DUSP1 RIPK4 EMP1 TET3 ADAM32 ZNF35 FAM126B DCBLD2 DUSP8 LETM2 SLC7A5 GPRC5A CYLD BHLHE40 BHLHE41 CLCF1 RAPGEF2 REL TPH2 TINAGL1 YTHDC1 ADM RASAL2 AREG MED17 C12ORF45 TRIM8 RHPN2 HLA-DQA1 ZNF101 BRD2 ZNF462 IFNGR1 MTRNR2L12 FOS AEN ZNF57 DHRS2 PGM2L1 MIPOL1 FOSB SLMAP ZNF217 RLIM ZNF335 FRYL FMN1 LYST PTGS2 UNK FGFR1OP2 RIOK1 GPAT3 ZSWIM6 ZNF202 ZSWIM4 ZNF442 ZNF441 PHLDA1 FBXW7 MITF ZBTB10 EMSY LRCH1 C1ORF61 KAT6A ZYX ZNF317 ZNF557 ZNF556 SQSTM1 ZNF555 ZNF554 PPP1R15B ZNF430 ZNF791 CCNT2 CCNT1 ODC1 PPP1R15A ZBTB21 AHR FOXO3 FAM214A ZBTB20 FGD6 ZFP36 CYSLTR1 RBBP6 TUBB3 FLNA FLNC KPNA5 PHLDA2 LDLR SLC16A6 SLC38A2 IGFBP4 TNFRSF10D TRAF1 FBXO38 VEZF1 TNFRSF10B PPTC7 DYRK1A FOXN2 NFKB2 MAFF MED26 FRMD6 KIFC3 MAFG BCL2L1 IL1RAPL1 FSCN1 ESAM CDC42EP1 LHX6 SPIRE1 ZNF655 YRDC ZNF532 BIRC3 MDM2 INO80D ANKRD33B KMT2E RAB3B IRS1 KMT2C ISG20L2 RLF HNRNPDL ABL2 BRIX1 PIM3 TMSB10 ANGPT2 ITGA3 ITGA2 CFLAR PTPN14 RABGGTB TNFRSF21 DNAJC2 LCOR ITGA6 TOP1 NFE2L3 NSRP1 BCAR1 DLX2 NFAT5 ZC3H6 ZC3H4 SPATA2 ZNF627 PHACTR3 SKIL CEP170 MCL1 UBE2F-SCLY PLEKHG3 LRRC8A CCDC59 FEM1A KLF5 KLF4 TBX3 KLF7 KLF6 TXNIP BDP1 MAK16 MYLK3 C1S FHL2 FHL3 SYNE1 ZBTB43 THSD1 HDAC9 TNFSF13B ZNF608 SLC25A22 ZNF844 UPP1 KCNJ3 SLC25A25 IFRD1 MGA ARL14 RUNX1 ACSL5 YOD1 EREG TM4SF1 LPAR6 EPHA2 TP53 RSC1A1 EIF5A2 NUAK2 PARD6B NOCT DHX36 E2F3 CCNL1 EGR1 APOBEC3D GADD45B ARRDC3 GADD45A PLA2G4C RASSF9 SUCO NCEH1 WNK4 GLIPR1L2 MACF1 DCAF4L1 CREBRF JMJD1C DCUN1D3 ICAM1 SOX4 RASSF6 EPC1 MIER1 HIVEP2 PIEZO2 HIVEP1 SOX9 PPP1R10 ZNF800 TNS4 IL11 EDN1 TSC22D2 ERCC6L2 LIF RHOB NR5A2 ID1 FAM193A KRT18 SDE2 FJX1 CSRNP1 OTUD7B TOR1AIP2 SBNO2 SMIM11B UGCG SOCS2 PCF11 ANKRD1 LYAR ZNF585B PALD1 SVIL PROX1 ZFX C1QTNF3-AMACR MT-ATP8 TJP2 PER2 PER1 F2RL1 WAC VMP1 ERRFI1 NRP1 MTRNR2L1 MTRNR2L6 GREB1L MTRNR2L8 PRICKLE2 MTRNR2L4 SH3RF1 XPO1 AKAP12 GSG1 SERTAD2 RSRC2 ENC1 OPHN1 XPO6 FILIP1L REV3L PDGFRA FBXW10 ZNF77 LIG4 ARHGAP29 ARID3B RUNDC3B KLHL21 ZNFX1 ARHGAP31 LIN28B AXL NUPR1 GPRIN1 MYADM CASS4 AMOTL2 INPP1 RBM48 TNXB ZFAND5 MASP1 PRDM4 PRDM1 ZFP36L1 ARID4B CWC25 ATAD2B STRN3 RELB NOL6 KLHL31 KRT6A EFNB2 CCND1 TAF1D GPC1 FGF23 USP47 UTP15 TGIF1 SYT1 NABP1 GEM SSH2 NR4A3 ZNF92 MXD1 MAP7D3 FGFR1 USP42 FBN2 MIDN SLC2A1 ACTG1 PLAU ARHGAP18 ETS1 RASGRP3 ETS2 CAMSAP2 NR4A1 ARHGAP23 POGZ RGS2 SNIP1 TIPARP SMURF1 NFKBIZ ARAP2 ETV3 NAV3 GPCPD1 GULP1 CLK3 ETV7 NFKBIA CLK1 VCAN IRF1 ELF3 FAM153B RBMS2 NUP58 PLEC NFKBIE TMEM45A KDM5B USP36 CXCL8 USP38 PINX1 NOP2 PLD6 TNFAIP3 CXCL2 LAMC2 AFF4 CHD2 CXCL3 MOSPD1 HK2 AGPAT5 FAM83G HRH1 NRIP1 KDM6A RBM39 TKTL1 TCF7L2 SPEN PDE4D LCA5 PLAUR IRGM JSRP1 GREM1 VGF SPRY4 DDIT3 SPRY2 SPRY1 TRIB1 COLEC12 COLEC11 ZNF292 DDX21 SLC4A1 RND3 SLC4A7 RBM5 SPRED2 SPRED1 SIX4 LEKR1 Mock v SARS-CoV-2 Caco2 4h polyA GSE148729 down TEX30 C5ORF15 GLYCTK PIH1D2 CKMT1A WDR75 C20ORF27 DEK SCAMP1 MEX3D HSPE1 LRRC37B FEZ2 CYP1A1 ORAI1 CDK14 POLR3K C2ORF72 VPS29 ASF1B SF3B5 CGGBP1 SF3B6 RNF2 POMP THYN1 C1ORF198 TMEM70 PDXP PRSS8 HOXA3 CHST9 NAA50 JUND PHC3 FZD5 FZD8 CEL BLOC1S5-TXNDC5 NR2F6 DHFR LATS2 BIN3 CTAGE4 PPT1 C19ORF25 DUS1L NOX1 MKS1 ANAPC13 HSPA4L GABARAP RNPEPL1 SCOC RPL34 ANAPC10 ANAPC11 GCSH MLST8 MYBL1 AMZ2 SULT1A4 BTF3 ACD CENPV ANXA1 PNPT1 LYPLA1 ANXA3 CHKA RMI2 MRPL28 SIRT5 JOSD2 LRRC23 LRRC20 POU6F2 WDR34 PIGF CENPH TAL1 PAH MITD1 GTF2H2C TMEM106B ERGIC2 ARF4 ZNF43 ADM TRIM2 OAZ1 SLC7A2 MRPL33 HSPB11 TRMT112 MRPL42 RAD51AP1 EPCAM KAT14 ECEL1 TPRA1 DFFB P2RY11 ANKRD49 YTHDF3 RNLS ANKHD1-EIF4EBP3 ELMOD2 TMEM62 GATC ADAM10 ELP6 PRSS35 TMEM60 GCFC2 TM9SF3 TMEM59 TOM1L2 PSMA2 PELI1 CKS2 GOPC LAMTOR4 LGR5 LINS1 SMTNL2 LGR4 BSCL2 FH RPLP1 SNX10 PPP1R2 TMEM267 PSMB6 UBL3 TMEM38B CHML BID TMEM14B OLR1 PAIP1 NUDT14 FBXW5 AGTPBP1 BRF2 AGL IPMK MUL1 C1ORF122 DCDC2 LRFN1 SNRPG AJUBA SNRPE MAD2L1 SLC25A36 NBAS SLC27A2 ZNF791 CRCP CHPF FAM117A NTPCR HIKESHI FGD3 PTAR1 CFL2 GTPBP10 TPM1 SRBD1 KPNA5 PITX1 SLC39A8 ZNF665 FANCL FAM217B METRN FANCF LRRC45 LSM5 ARL17A FBXO30 TMEM18 MOB4 CDC42EP3 BIRC5 ERF PGP BCAT1 RSL24D1 ZNF771 LRRC58 GMNN CUL5 C15ORF61 PHB HSPBP1 TM7SF3 RHOBTB3 STK11 VPS72 MPC2 BAG2 ZNF528 AP5S1 EIF3CL BMF RAB4A COA5 MGME1 CYB5B RFC5 KCNJ8 COA1 MACC1 BICC1 CDK6 APOA1 SYF2 PSMG2 DCTPP1 ZNF511 NFE2L3 SOS1 KHDRBS3 NDUFB5 SHMT1 ST20-MTHFS HMMR NDUFB3 DVL2 B4GALNT2 SMN2 ME3 CEP290 SMIM10 NDUFA9 UGT1A1 ADRM1 CABLES1 SORL1 LBHD1 RBM14-RBM4 SLC25A17 SLC25A16 PPM1B VAPA DNAJA3 RAB17 SEMA3C RPE HSD17B14 ATRAID CXXC5 BPHL COCH TTR REPIN1 CDC45 MDP1 POLR2B LRRC8D ZNF846 ITGB8 SLC25A24 CD320 DUT SLC12A2 ARL14 PPA1 LACTB2 SUB1 CALM2 C22ORF39 GLS2 CMAS SLC46A1 UQCR10 CALML4 UQCR11 AKAP5 PYURF NTN4 NFS1 ZNF709 RACGAP1 MCRIP1 ZNF704 ARFIP1 SEPHS2 RIBC2 SLC12A9 TRMT1L DTNA TMEM50A TGDS GDF1 CMC2 MIF PLA2G4B AMMECR1 COMMD2 MIF4GD COMMD8 NCEH1 RPS29 MYO5C IGSF1 INTS8 SSX2IP ZMYND19 TXN LDLRAD3 TMTC3 THUMPD2 C4B 2 HNRNPLL GNG10 TSPAN8 TSPAN4 ZBED5 AASS NBPF6 CCDC117 NCOA7 KBTBD6 KITLG KLHL6 ID2 G2E3 TAX1BP3 RHOU ATPAF2 CLIC5 COX7C TRAM1 DTYMK CITED2 SLC44A3 MRPS12 ACY1 AATK TWF1 CROT LIAS PTPRG SMIM11A HINT3 MAGT1 MIS18BP1 ANKRD1 TMED1 TMED7 SOCS6 TMED5 TPD52 SPRYD7 MRPS24 ORMDL1 CREG1 LIMA1 FOXA1 TOMM40 MRPS34 N4BP2L2 MRPS30 MRPS31 NUCKS1 NUDT4 NUBP2 SERP1 PGRMC2 CBR4 GINS2 DIMT1 LMO4 CPSF4 TRPV3 ALG13 SDHD PPP4R3B CRIM1 ARHGAP28 CRLS1 GLTPD2 LIN28B TMEM138 UBE2S COL5A2 UBE2T CAPZA2 GSTA1 RPP21 AMOTL2 COX20 DEGS1 PDE7A UBE2M PCNA GALNT12 ZWILCH SLC1A1 SLC1A3 AURKA GALNT10 TMEM243 PCNP TMEM129 PERP SPTSSB SPATA6L PAM16 ARHGEF17 DOLK DIAPH3 TMEM236 DDAH1 EBPL MICU3 TCF4 MFGE8 GCLM BLVRB SRP19 NARF PKDCC PYROXD1 CCDC127 JADE1 SLC2A3 DPY30 TRIAP1 AGER DNPH1 SLC2A8 HIGD1A SLC2A9 MYDGF GATAD1 NME1-NME2 UBD AC012314.3 SBF2 AC012314.4 ATP6V1F AC012314.5 PDZD8 AC012314.6 GALNT7 POU2F1 KDM4C HSPA6 ABCC9 GGH PARVB COQ4 BMP4 ELF1 TMEM212 AC011043.1 BMP2 CYCS MNS1 SOWAHB NFKBIE SHANK3 USP38 PIK3R2 HMGB2 DBI HS2ST1 UBE2Q2 DBT CASP3 PDLIM5 CXADR TCFL5 FAHD1 TMEM30A RWDD4 LCA5 GLRX3 TBX19 NUP35 SLIRP SCLY DYNLT1 PFDN4 AURKAIP1 ITGB3BP SCARB2 NXN THBS1 CLCN4 UFL1 ARHGDIB EPS8L2 PDSS1 BPNT1 PSTK Mock v SARS-CoV-2 Caco2 4h polyA GSE148729 up CKMT1B ZNF282 SYTL2 CD3EAP PRKAB2 RUFY1 DYNC1LI2 ZFYVE19 POLR3A C19ORF44 TOLLIP GPR161 RPL28 FSIP2 PLCD3 MT-ND6 JRK CHIC2 MT-CO2 RETSAT AHNAK SERPINE1 SLC5A3 MT-ND4 MT-ND1 DLL4 APOL6 GTPBP1 CNST ZMIZ1 FLRT3 GPATCH1 MYC S100A14 STOM S100A16 ANKS1A ST3GAL2 VPS18 ZNF267 KLF13 ADGB SAP30BP ZNF142 PRKCD VPS37B TFIP11 KLF16 PRRC2C TMEM198 FERMT1 GIGYF2 FOSL1 ABTB2 FAM160A2 EHD4 CTAGE8 HAMP SNAI1 POM121 MEPCE TMEM92 ZXDB CYB5R2 GJA1 EPB41L1 RNF216 IER2 MYO18A SFN JUNB HOXC9 IER3 GARNL3 DUSP5 DUSP4 ZNF483 CGN EMP1 FN1 NIPA1 JOSD1 DUSP7 DCBLD2 MMP10 TOMM40L GLUD1 GPRC5A GPRC5B PLEKHM1 RNF145 GRAMD1A ZNF230 RASAL2 SHB GLG1 HSPE1-MOB4 TRIM8 PANX1 SHH RHPN2 SH3BGRL3 ATXN1 ABHD14A-ACY1 BRD2 IFNGR1 NDE1 STAT3 TM9SF1 DHRS9 NMNAT2 FOSB PLIN3 ZNF217 ZNF215 C16ORF87 ZNF697 SETD5 LAD1 CDKN1A PYGB OGFR MTMR14 TMEM51 FGFRL1 PRSS22 FOXQ1 MPRIP GCNT3 RIOK3 GPAT3 CSGALNACT2 MAP3K4 ZNF562 SEMA4B PHLDA1 TLE3 ZNF561 BRPF1 GK BRPF3 LARP4B CHERP HIPK1 BUB1B-PAK6 C6ORF141 LRFN3 STIM1 RAB35 KAT6A CNOT4 TNIK DSC2 UGT1A10 POGLUT1 CTNND1 SRRT PPP1R15A RNF39 PLOD3 CLU EGFR C6ORF132 FOXO3 SLK FGD6 ZFP36 SH3BP1 TUBB3 FLNA FLNB FLNC LDLR LRRC46 ODF2 IGFBP4 TNFRSF10B EEF2 FBXO31 MFHAS1 FRMD6 FRMD8 PITPNM2 NCL CDC42EP2 SPIRE1 DNMT1 CERS1 ZNF532 CUL9 CEMIP IRS2 GSTT2 GPATCH2L STK10 ZNF649 PRRT2 ITGA5 DTX3L COL26A1 SETDB1 ITGA3 ITGA2 TXNRD1 CDC42BPG KCNJ15 CFLAR MUC5AC MICAL3 CDC42BPB BAIAP3 GNL3L TMBIM1 CDK9 TNFRSF21 ARL4C BCL3 SP6 NES CDR2L ITGA6 NFE2L1 PRR36 MT-CYB SERINC5 RASGRF2 C3ORF52 UBR4 ITPR3 PTPN23 BICD1 METTL14 DSE PHACTR3 SMN1 HIF1AN WASF2 MCL1 UBE2F-SCLY DSP EIF3A PLEKHG2 SMOX DST LRRC8A MYO10 MBOAT2 KLF5 MYO1E KLF6 TSPAN14 MYO1A P4HB CRK TRIM33 GPR89B ALAS1 WDR3 FHL2 LUZP1 PIK3CD TNFSF13B CNNM2 PPP1R13L SCRN1 SPDYE2 PCDH7 NPIPA2 ADAMTS9 KCNJ2 ZNF841 NPIPA5 PCDH1 SLC25A25 WDPCP MGA CIDEB PLEKHA6 NBEAL2 ACSL5 MED13L TM4SF1 MALL APC KATNAL1 TRIM15 ZNF710 EPHA2 SIK1 AKAP1 STXBP5 AQP3 RAD54B ANTXR2 BAIAP2L1 C4B STRIP2 PARD6B HERC3 NIPAL2 RILP RAB11FIP4 RFFL EGR1 GTF2H2C 2 ST6GAL1 GADD45B CSNK1E SUCO IGF2 VASP PTK2 PARP12 LPGAT1 MACF1 SLC45A4 MAGED1 NUMA1 ZBTB2 NBPF26 RASSF5 DPF1 MICAL2 FAM53C REG4 KAT7 SOX8 TNS4 SOX5 APOB CTSB IL11 RHOF RHOB NBPF19 CLDN11 CEACAM1 ID1 KRT18 CEACAM6 ARHGEF2 SFI1 STK40 SGK1 C2CD2 SDC4 STC1 SLC7A11 SOCS3 MAP1LC3B MAP4 NKIRAS2 HNF4A SNX9 SPTBN1 UBALD1 SYP TRAIP THOC5 MYO9B TJP2 TTC9 HNRNPUL1 HNRNPH1 B3GNT7 B3GNT5 F2RL1 TACC2 TSSK2 ERRFI1 ADIRF MTRNR2L8 SLC20A1 MKI67 TRAK1 HERPUD1 SH3RF1 ARNTL2 AKAP13 MT-ATP6 AKAP12 SPTLC2 MNT ENC1 KIF13A CD59 SPTAN1 LCMT2 MAP4K4 LAIR1 TGFB1 PDGFRA IL4R ARID3B LMO7 ACYP2 EHBP1L1 SCN8A GPRIN1 RELL1 PMP22 PRR15L MYADM LRP10 OTUD5 INPP1 ITPRIP PRDM4 ZFP36L1 ASAP2 HDLBP KRT6A EFNB2 SH3TC1 PAK1 ASAP1 PPFIA1 CLASP1 CAPN1 RELT FGF23 SMAD3 MUC17 ARHGEF18 SUPT5H SYT7 AC145212.1 DNMBP GCLC CAPRIN2 TCF7 FGFR1 DOCK7 MIDN COPA PXN LRRFIP1 DOCK8 ACTG1 CACNA1D ETS1 ETS2 IGF1R PLCXD1 ARHGAP21 HCAR1 PODXL RGS2 COBLL1 MUC13 USP53 BCL9L PRODH MMP1 LAMB3 SMURF1 MMP3 RBM19 CAV1 HMGA1 NAV3 IRF1 TMEM214 ACOX1 MAN2B1 CMTM3 PLEC BMPR1B TMEM45B TNFAIP8 CHD7 FUT1 NR2C1 LAMC2 HK1 HK2 MFSD9 SCFD2 LASP1 URAD FGA SPEN YWHAZ POMGNT1 USF1 CNBD2 CLDN4 ABHD17C VGF HKDC1 CDIP1 SPRY4 TAF7 DAAM1 B4GALT5 TRIB1 THRB SGSH PRRG3 DIP2B Mock v SARS-CoV-2 Calu-3 24h totalRNA GSE148729 down CFAP73 HOMER2 AHNAK2 IFT80 EID1 SCD DEPDC1B MARCKS GPR160 GPD1L VIM PLCD1 CYFIP2 PDXK PGAP3 AHNAK NCAPG RNF5 HNRNPR ASAH1 SPDEF DPYSL2 KNSTRN DPYSL3 SPOCK2 SAMD1 EXPH5 FDFT1 SNCA CHST9 PRR11 ICMT PLK1 ATP6AP2 ERLIN2 TMA7 TEX15 AIF1L DHFR SQLE GJB1 VANGL1 HOGA1 SAPCD2 TCN1 PLBD1 NOSTRIN SSPN SFXN3 FARSB HACD2 CDCA3 CFI TFRC CDCA7 PRKDC HACD3 TRIOBP MYLK C5 PRDX5 ALCAM STMN1 PRDX2 NYNRIN SCP2 PRKAR2A PDGFD KCNMB4 ARPIN PRKACB PROM1 IKBIP SRP9 ANXA2 ANXA4 ANXA5 EMP2 IFT122 MRPL24 SUMF1 LYZ LRRC20 CENPE CENPF CENPI VEPH1 PAH PXMP4 AGO1 PIGK PAM PCYOX1L GPI CDKN3 SERPINA3 SERPINA4 ANXA8L1 ABHD2 TRIM2 IQGAP3 FAM149A ACAT2 ERMP1 LDHA SH3BGRL2 PBK HAVCR1 CEP55 EGLN1 MBNL3 ODAM NDE1 PET100 NFIA CIT FARP1 TMEM59 RNF128 SLC39A10 NCAPD2 LAMTOR5 LAD1 RPLP0 TUBA1A CENPA LMAN1 NSDHL FAM102B ANXA8 ANXA9 METTL7B MDH1 APPL1 FADS1 GSN SRD5A3 USP5 PPP1CB CDC25C MORF4L1 OLFM4 MSH6 TNIK DHCR7 COPS9 ROR1 DSC3 UGT1A10 VTCN1 SLC25A40 CREBL2 PARK7 PAPSS1 SC5D SLC16A7 TPM1 CHP1 SPP1 HMGN3 KPNA2 ATP9A CCDC18 ODF2 BNIP3L ARPC5 PHKB NBEA LSM3 GGCT SCCPDH BIRC5 GPR107 PCYOX1 TMEM19 IFNAR1 MYOM1 NOTCH3 PFKFB3 PFKFB2 SLC26A2 MAZ INSIG1 FAM107B AK4 MSI2 HNMT TM7SF2 GOLIM4 UQCRH MPC2 UROD PMEPA1 SESN3 LEPR NEK2 ROS1 PLS1 RAB4A AP2M1 COA3 DHCR24 NEB BICC1 CYB5A LCP1 MGAM2 CPD MTFR1 MCM6 TMBIM6 SERINC5 NDUFB6 GLO1 HMMR KLC4 PMVK DSEL CCDC85C CAPZB PGK1 ACP6 LBR CCDC34 BCAS1 SMARCC1 TRIQK MMAB CYP51A1 SPAG5 MBOAT2 SYT16 PRC1 CTDSPL TSN ASPM MYO1C VPS41 CD109 UGT2B7 ITGB1 ARHGAP11A ITGB6 ITGB5 SEMA3E SRI ETFB KIAA0100 ATRAID PIK3C2B TSPAN12 PBXIP1 CXXC5 USH1C GM2A VPS35 ITGAV DCAF11 SLC25A23 CACNG4 DYNC2H1 BRI3BP ECH1 SLC12A2 TM4SF4 SMARCA2 TMEM170B TTC39C DHX40 NIN ANP32E KIF20A OBSL1 CERK PLEKHB1 STX10 SEPHS1 RACGAP1 NIPAL3 IARS2 E2F8 XRCC5 ST6GAL1 CMBL VAT1 ALDH7A1 TPX2 TNNT1 GNPAT SDC1 TAGLN2 ITM2A RPS25 CFTR ARL6IP1 PDE1C ANP32A MGST2 PTTG1IP HTATSF1 LGALS4 COMMD9 GNG10 DMBX1 KLHDC7A TSPAN8 ARL6IP5 TSPAN6 ARSD STRBP GNG12 MLF1 VAV3 ENAH PDZK1IP1 PTPRF CLDN10 CCNG1 UFC1 G2E3 DEPDC1 FAM20B COPG2 AKR1B10 CD24 TLR5 TOP2B PTPRU PTPRS SLC44A4 TRAM1 DTYMK MAOB CETN2 TOP2A KLK6 KIF15 KIF14 PCSK9 CD99L2 KIF12 ACACA ANKRD9 NNT HLTF MAP4 ERI3 IDS MLEC GNPNAT1 CTSH LMCD1 CTSD SORT1 MME TTC3 AKR1C3 SORBS2 PGRMC1 SVIP ESYT1 CD46 HIP1 NUDT2 NUDT3 MKI67 NUCKS1 CRIP2 NUSAP1 RARRES1 CA12 RALBP1 MMGT1 G6PD LMO4 APLP2 SPINK1 SGO2 EEF1A2 ALDH4A1 EEF1A1 TBL1XR1 CYP24A1 BUB1B KIF4A SPNS2 ANKS6 TGFBI CAPS GALNT12 UBXN2B HSD17B4 AURKA HDLBP ATP1A1 GALNT10 FAM172A CAPN5 TCTEX1D2 PERP PTTG1 DNAJC22 GPC4 CAPN2 MYH10 NDUFV1 REPS2 FDPS SREBF2 IDH1 SLC30A9 HGD IDH2 KIF23 DARS2 NAALADL2 ACSF2 ALDH3A2 CCNA2 TMEM237 CHMP3 FGFR3 MXD4 BLVRB COX17 COX16 CACNA1D TRHDE DNPH1 CCNB2 EBP CCNB1 AC012314.3 ACAA2 AC012314.4 PAIP2B GGT1 HADH AC012314.5 COX11 AC012314.6 ABCC4 HGSNAT MKKS CBX6 CBX5 CMTM4 GGH CMTM6 CAV1 GALNT1 DNM1 RCN2 RBL2 EEF1G MYH9 MNS1 FAM72C BMPR1B RTN3 IDI1 GPSM2 NCAM1 HMGB3 LMNB1 SLC3A1 HMGB1 SLC40A1 DBI HS2ST1 LASP1 UPK1B IRAK1 SARAF VILL CXADR MBTPS1 PPP2R3A LSS FAM168A TRAPPC6A TBC1D5 CAT MVD GALM ABCD3 THRA PALM3 USP13 YBX1 HMGCR MSMO1 NCMAP CRYZ NT5DC2 OXCT1 ARHGDIB POLD2 PALMD MAPK3 Mock v SARS-CoV-2 Calu-3 24h totalRNA GSE148729 up MX1 MX2 AFAP1 DICER1 FRS2 PSMB9 CPEB2 TEP1 RUFY4 CYP1A1 RBCK1 CPEB4 CPEB3 IDO1 OPTN ATF3 ZNF274 SAMD9 AP5Z1 BACH2 CH25H APOL6 IFNL1 GTPBP1 IFNL3 IFNL2 PPP4R4 GBP1 APOL2 GBP3 HES4 ST3GAL2 APOL1 GBP5 EPSTI1 APOL3 GBP4 BATF2 JUND FZD4 DNAH17 PLK3 MOV10 FA2H FOSL1 EHD4 PSME2 LGMN PRKD2 SNAI1 HLA-DRB3 CFAP54 PRR15 CFAP57 CFB HLA-DRB1 CFH PDGFA TAPBPL BAZ2B C2 C3 IL4I1 RNF213 NUB1 ZC3H12A ZC3H12C NKX3-1 IER2 IER5 DUSP5 PNPT1 JUN GSDMB DUSP1 CCL20 SEC16B IL10RA TET2 TTC9B DUSP8 ITPKC CYLD RNF149 ZEB2 REL ACHE ZC3HAV1 ENDOD1 ADM AREG KIAA0040 BBC3 TRIM5 RIPK2 BRD2 SERPINB2 ZNF462 STAT1 ANKRD30BL STAT2 G0S2 FOS TMEM62 SERPINB9 DAB2IP FOSB ANGPTL4 PELI1 HBEGF TMEM229B ZNF697 COL11A2 OGFR TMEM140 PTGS2 IFIH1 PSMB8 HLA-DMB HLA-DPA1 GCNT4 JAK2 STUM ZNF200 TAP2 TAP1 PNRC1 MOB3C CXCL10 CXCL11 TRAFD1 LY6E COL16A1 CSF3 CSF1 PPP1R15A ZBTB21 TNF ZBTB20 FOXO1 JAKMIP3 ZFP36 RNF19B RAB24 UBN2 LAMP3 SLC16A9 NPTX1 GRB10 HLA-DOB MAP3K8 SIAE MB21D2 SLC15A3 TRPC4 BTN2A2 IGFBP4 FST TRAF1 TNFRSF10B TNFRSF10A MAFA NFKB2 RCAN1 MAFF MYD88 NT5C3A FSCN1 XAF1 SP140L BIRC3 ANKRD33B CD274 CNP KMT2C SAT1 STK10 ABL2 TRIM69 PLXNA2 TNFRSF9 EIF3CL SEMA7A GPX3 ANGPT2 PLCH1 DTX3L KSR1 ASNS CFLAR TNFRSF1B SNPH HLA-DRA TRIM56 NFE2L3 GMPR C3ORF52 CSAG3 NLRC5 DUSP16 C15ORF48 DUSP10 DNAJB4 ZNF627 PHACTR4 ZNF503 CIITA ZNF620 PATL1 SPAG9 ERAP1 ERAP2 KLF4 PATL2 KLF6 MFSD14A TXNIP TRIM38 PIK3AP1 BLZF1 CEBPB SEMA3A C1R MDGA1 TRIM31 SEMA3D UNC93B1 C1S SYNE1 DDX60L PPM1K CXXC4 TULP2 ITGAM AMBRA1 HDAC9 TNFSF13B SLC25A28 DHX58 CCL5 TRIM26 TRIM21 TRIM22 SP110 LRRN3 ACTN2 RSAD2 ARL14 MMD2 PLEKHA4 PML LAP3 NEURL3 IFI27 XRN1 HIP1R TRIM14 UHRF1BP1 DCP1A EPHA4 IFITM2 IFITM3 LRP2 IFITM1 SP100 MYCBP2 STX19 NOD1 TRANK1 UBE2L6 C4A RGPD5 PSMB10 HERC6 HERC5 C4B NUAK2 IFI16 NOCT ZNF704 CHAC1 SLC12A7 B2M CCNL1 N4BP1 EGR1 EGR2 APOBEC3G TNFSF15 GADD45B ARRDC3 PLA2G4C HLA-C HLA-A HLA-B IGF2 OVOL1 HLA-E IFI44 HLA-F SRPK2 PARP14 EXT1 ARC PARP12 PARP10 RAET1L IFI35 IFIT5 IKZF3 IFIT2 WFDC5 IFIT1 IFI30 ICAM1 IFIT3 MED12L MT2A HELZ2 EPC1 KCNN1 HIVEP2 TNFSF10 IL12A LGALS9 SYNPO ZBED5 CCR1 IL15 TSC22D2 BTN3A2 BTN3A1 NCOA7 NMI LIF BTN3A3 IL1A BST2 CEACAM1 THEMIS2 GLCCI1 AVPI1 TLR3 CSRNP1 CD40 CITED2 SECTM1 STC2 NEDD9 ADRB2 CX3CL1 CTSS SOCS3 DUOX1 SOCS1 IL32 GCH1 ZFP91-CNTF PARP9 NEDD1 PER1 SAA2 F2RL1 CMPK2 ZNF354B RYR2 IFNA7 MTRNR2L1 PTGER4 MTRNR2L6 HSCB MTRNR2L8 HERPUD1 PCLO RANBP3L SIPA1L2 RSRC2 OPHN1 TLDC2 HDX IFNB1 CD55 LMO2 ZBP1 CD74 GDF15 ARHGEF38 GCA CXORF49B LIFR PDGFRL IFI44L ZNFX1 FAP FAS OTUD1 CD68 TYMP CD83 SLFN5 NAPA GIMAP2 SLC1A3 ARID4B IFI6 SAMD9L CELSR3 RELB ZFP36L2 BAHCC1 WIF1 CMTR1 DDX58 INHBA ISG15 TDRD7 ISG20 MXD1 LPA CREB5 IL7R ZCCHC2 RASGRP3 ETS2 DAPP1 NR4A1 DDX60 KCNV1 SYDE1 PDZD2 PODXL UBD SNIP1 ZNF385C PMAIP1 MLKL CYP2J2 TIPARP SMURF1 NFKBIZ NAV2 ARAP2 SHROOM2 ETV3 OAS1 GPCPD1 TAPBP ETV7 NFKBIA IRF1 IL6 BMP2 OAS2 OAS3 IRF9 IRF7 NFKBIE TTC26 CXCL8 CXCL9 UBA7 HSPB8 TNFAIP3 NCALD PIK3R3 CXCL2 TNFAIP2 ADAR CHD2 CXCL3 TTC28 FUT4 HRH1 IRAK2 RASGEF1B FAM83A CXORF49 SCN3A RPS6KC1 CASP1 CPXM1 KDM6A KDM6B IL15RA FNDC3A PLAUR HSH2D DDIT3 ACKR4 SPRY2 PTX3 B4GALT5 RTP4 USP18 NR3C1 OASL RND1 SAMHD1 CHSY3 KYNU Mock v SARS-CoV-2 Calu-3 4h totalRNA GSE148729 down MED4 MX1 BTBD19 RPL24 PIH1D1 MCTS1 DEK RPL17-C18ORF32 HSPE1 PSMB9 EID1 FEZ1 SARNP PSMC2 TBPL1 SPIN2B HNRNPC POLR3K VPS28 SF3B5 POMP PON2 ABRACL RNF5 TFPT SRP72 GPBP1 GNG5 C19ORF53 PSMD4 AP2S1 PRSS3 RPL18 S100A11 NAA50 RPL41 ATP6AP2 TMA7 MTHFS WDR54 GPN3 NUDT16L1 ACE2 GJB1 FAM111B VAMP8 PKIB TCN1 SERPING1 PSME2 ST20 ITPA CTAGE8 HPRT1 PRR13 CFB HLA-DRB1 ANAPC13 RPL30 HHLA1 HHLA2 SCOC POP5 RPL35 ZNF625-ZNF20 RPL34 MRPL18 LIPA BLOC1S5 GCSH C12ORF57 PRDX3 PRDX5 STMN1 RPL37 TIMM17A AS3MT AMZ2 SULT1A3 BTF3 SRP9 ANXA1 LYPLA1 ANXA3 TMCO1 TIMM23 MRPL27 LYZ CENPE NSA2 FXYD3 HLA-DQB1 CENPQ ERGIC2 OAZ1 LRRC31 TRMT112 RAD51AP1 TIMP1 RIPK2 DLGAP3 TIMMDC1 DYNLL1 MDH2 CDKN2A PET100 HSBP1 MRPL47 MZT1 RNASE1 TMEM60 COX6B1 PSMA6 TMEM59 PSMA7 PSMA2 PSMA3 TIPRL APEX1 NUCB2 LAMTOR5 LGR6 MSRB1 RNASEK NDUFA12 NDUFA13 GSTP1 TUBA1A PPP1R2 TMSB4X PSMB8 FCGRT PSMB6 PSMB3 TMEM47 AP3S1 AGR2 MDH1 TMEM38B IKBKG DEPTOR HLA-DMA BID TMEM14B TMEM14C CD164 TFPI2 POU2AF1 AGT RBX1 TUBA4A COPS4 HAT1 UQCRQ C18ORF32 PDCD5 SRSF3 ANKRD22 SNRPG SNRPE MAD2L1 C11ORF58 FKBP3 VTCN1 UBE2D3 UBE2D1 CREBL2 LAPTM4A RIDA SAP18 SPP1 HMGN3 FANCL ZCRB1 BNIP3L LRRC40 ARPC5 LSM5 LSM3 DUSP23 TMEM11 RHEB PUDP DRAP1 NPHP3-ACAD11 RLN2 NOP10 PIN1 RSL24D1 GMNN TPMT UQCRB RNF181 EIF4EBP1 ARL2 PHB ARL3 AK6 SAT1 BOLA2B UQCRH MPC2 UROD TMSB10 GPX2 VBP1 LANCL1 TPRKB NDUFC2 ZNF75A CDK7 NPC2 DNAJC8 CDK5 TMBIM4 SYF2 RPL37A ECHDC1 CDK1 ENY2 NDUFB9 NDUFB7 NDUFB6 ONECUT1 NDUFB5 NDUFB1 APIP ZMPSTE24 MDK PSAP SPR SLCO1B3 CAPZB RPL36A SERF2 SMN2 CCDC34 MROH7 COA6 BCAS2 NDUFA6 NDUFA5 NDUFA4 TSTD1 NICN1 NDUFA2 RPL35A RPL23A LAGE3 RAB10 EIF3M RAB13 EIF3K OCIAD2 SMIM20 RAB18 SMIM22 EIF3E MMADHC PPM1N ETFA ATRAID TSPAN13 CECR2 HIRIP3 SUMO2 MIEN1 POLR2F C3ORF33 SEC11C POLR2K SSB C9ORF135 ECH1 ARL14 TM4SF4 PPA1 NEIL3 PPA2 SLPI SUB1 CCDC82 MT1E MT1F WBP1 IFITM1 PLEKHB1 UQCR10 CCNC UQCR11 MAGOH RPL36AL PDCD10 C1GALT1C1 SNRPD3 SNRPD2 GSTT2B ZFPL1 C3ORF14 GTF2H2C 2 SURF1 TMED9 ALG5 MANF COMMD4 COMMD1 HLA-B COX7A2L COMMD8 HLA-E COMMD6 MYL12A RPS26 PLPP5 RPS28 NDUFAF4 RPS21 RPS20 CYSTM1 ITM2A RPS23 RPS25 IFI27L2 PTGFR BEX3 ARL6IP1 IFI35 TXN TXNDC12 MRPL1 MRPL9 TSPAN8 ARL6IP6 ARL6IP5 TSPAN6 TNFSF10 TSPAN1 SEC62 SPA17 CCDC115 KRT14 CRIPT PDZK1IP1 CLDN10 FRG1 CCNG1 AKR1B10 CD24 TOMM5 SLC44A4 COX7C COX7B DTYMK ZCCHC10 SLC35F4 RPS10-NUDT3 SUPT4H1 MRPS11 KRT23 NEDD8 KHK IER3IP1 ZCCHC17 CX3CL1 PCSK5 CTSS SMIM11B RAP1B SNX3 SH3BGRL MAGT1 SEC61G CTSH TMED7 LRRCC1 MPZL2 ATP6V1G1 RANBP1 MRPS21 MRPS22 CACYBP AKR1C3 RPA3 C1QTNF3-AMACR PGRMC1 SVIP MT-ATP8 SPCS3 NDUFAB1 SAA2 TCEA1 SAA1 CD63 CSTB AKR1B1 DIRAS3 DERL2 COX5B SERP1 BCAP29 METTL5 SDF2 RARRES1 CD74 APLP2 SDHD CWC15 SPINK1 NUPR1 UBE2T TMX1 CDK2AP1 YPEL5 CCDC152 MPHOSPH6 STEAP1 UBE2N RPL26L1 PCNA CHRNA5 NAPA AURKA SLC1A6 COX6A1 AURKB HOXA11 PCNP ZNF85 PTTG1 ROMO1 EPHX1 VTA1 CYBA ISG15 TBCA KIF18A CT83 UBA3 MUC20 CHMP5 TXN2 ALG1L COX17 COX16 DPY30 SRP14 DNPH1 HOXB13 PLCXD3 HIGD1A CCNB1 ZMAT2 UBB UBD FDCSP ATP6V1F MMP7 CBX3 OAS1 IQCK HIGD2A IFT43 SHANK1 NDUFS5 CFAP36 CYCS NDUFS2 MNS1 NAA38 CUEDC2 FAM72D IDI1 PSMD10 CKS1B CBY1 HMGB2 DBI CA2 TIMM8B RWDD1 SOD1 THAP2 JSRP1 TRAPPC6A SLIRP PFDN2 SSBP1 PFDN4 PFDN6 AURKAIP1 ITGB3BP DCTN6 YBX1 MSMO1 CRYZ MAT2B ARHGDIB PRRG2 IFT57 RBM34 Mock v SARS-CoV-2 Calu-3 4h totalRNA GSE148729 up LRRC37A3 POLR2J2 POLR2J3 AHNAK2 CD3EAP NUP210 ISL2 CAPN15 KIAA1217 TEP1 WDR81 GPR161 ASB7 POLR3H FILIP1 ASB1 ATF3 ZNF275 MTMR3 JRK TRRAP MAML1 MTMR9 SNX33 SPG7 NPIPB11 GABPB2 ACCS SULT2A1 IFNL1 DCAF1 DCAF4 FBXL20 IFNL2 FLRT1 CAPNS1 ANKS1A PPARGC1B ZNF18 FZD1 ABCA3 ZBTB7A ZNF264 JAG1 ADGB ZNF142 ATP6AP1 PLK3 FZD8 MARS2 MTHFR PHKA1 FERMT1 HSPG2 FASN CTAGE4 CHST3 PADI1 ZNF496 TRIO MT-ND4L PDGFB GATA6 MYSM1 ELK3 LARP1 PPP4C PCNX2 PCNX3 MYO18A JUNB ZNF248 SULT1A4 JUN SEC16A ASH1L TMC7 JOSD1 SLC7A5 GIPC1 MBLAC2 ABCC10 AGO4 TTLL4 MTF1 AGO2 BHLHE40 GTF2H2C RAPGEF6 ANKRD61 SIGLEC8 IL18BP ZNF112 ZNF594 WDR27 YJEFN3 ZNF592 KCNC4 SERPINA10 RASAL2 HSPE1-MOB4 GJC1 GPRASP1 HMGXB3 ZNF587 ZNF586 ZNF462 ZNF460 ANKRD30BL MTRNR2L12 ADAT1 SCAF1 SERPINB8 BIVM-ERCC5 GTF2H4 HSFX1 FABP3 ADAM19 NFIC MAP1B ZNF217 SETD5 ZNF573 CDKN1A SMG1 PRKAG2 ZNF69 RECQL5 NDST2 BORCS7-ASMT C18ORF25 ADAMTSL4 MPRIP CARNS1 ANKRD50 CSMD2 ZNF324 ZNF445 ZSWIM3 ZNF202 NUDT13 ZNF562 ZBTB18 ZNF440 SEC24B MAP3K2 BRPF3 BTBD7 HIPK2 TICAM2 ATP11A TICAM1 LRCH1 SKI CNOT6 C1ORF116 RIMBP3 ZNF318 ZNF316 SLC25A37 ZNF672 ROCK1 CHRM5 ZBTB24 EGFR SLC9A1 FOXO1 ITPRIPL2 HEPHL1 HAS3 FLNB MAP3K9 SIAE IGFBP4 GPR75 NSG1 PPTC7 HPS6 LY75-CD302 PIAS2 RNF169 FRMD6 MAP3K10 MAFK RNF166 MDM2 PFKFB3 DIDO1 CUL9 CEMIP CD274 NOTCH2 KMT2A KMT2D KMT2C RORC RAB43 OSBP SESN2 ABL2 ZNF526 PLXNA1 EIF3CL SEMA7A ZNF764 TRIM66 ZKSCAN2 CDRT4 CTCFL FUS KCNJ11 ITGA2 DDHD2 ZFP64 ITGA9 NES SPACA6 CDRT1 TRIM56 GDPGP1 AHDC1 IREB2 NFAT5 FAM47E-STBD1 CELF1 ONECUT3 RASGRF2 ST20-MTHFS PTPN21 ITPR3 UBR3 FOXK1 BICD2 FBXO41 ADAMTS15 RDH16 ZNF746 MDN1 CEP170 CR1 DSP NCKAP5L CEACAM19 KCNH8 RALGAPA2 KHNYN MYO10 KIAA0232 SCART1 KLF4 KLF7 KLF6 TSPAN14 MCM3AP ZNF618 SYT12 NPIPB5 NPIPB4 TLL2 KCTD13 KCTD19 MYO1G DYSF DNHD1 LENG8 PPM1L TTN CACNG8 KIAA1549 SPDYE1 PHKG1 HECTD4 ERC1 NPIPA1 INSL6 HNRNPA0 VSTM4 MLXIP CDON SLC12A4 IL1R1 MGA RUNX1 NBEAL2 MED13L SRRM2 SERHL2 UHRF1BP1 SIK1 BCORL1 TRIM11 NAIP CERK NTN3 HERC2 DHX34 CSNK1D NNAT DHX36 SUSD6 BSN FAAP100 EGR1 PINLYP TMEM184A INSR ALG9 INTS1 NUAK1 WNK1 WNK2 INTS5 RGL4 RCOR1 NPFFR1 DCUN1D2 LGALSL PREP GBA2 MED12L GOLGA3 TNS1 ZNF805 MICAL2 HIVEP1 TNS4 FEZF2 ZNF587B AKIRIN2 RTEL1-TNFRSF6B ZHX3 TMEM150C LIF NBPF10 AMPD2 PTPRE NBPF19 CTRL FUBP3 CCNG2 ARHGEF5 CAMK4 MEGF8 SOCS3 SMIM11A NEU3 SLC22A14 MFSD4B SOCS7 BCL2L2-PABPN1 LMLN ZNF816-ZNF321P GBF1 ZFX DOHH LBX2 LRRN4CL DLC1 AL354822.1 EPPK1 TSSK3 ERRFI1 MTRNR2L6 MTRNR2L8 PRICKLE1 CRAMP1 TBC1D3K AKAP13 PCLO AKAP12 SERTAD2 TLDC2 IFNB1 LAIR1 HUWE1 AP5B1 KLHL21 ANKHD1 TANC2 UBE2O MYADM WDFY3 INO80B-WBP1 POC1B-GALNT4 RAI14 OTUD4 SUPT6H CELSR1 CRTC1 GEMIN4 UBE3B KLHL36 ASB18 CELSR3 ZNF8 TATDN2 PRR14L NT5M EP400 DENND5A MORC2 ZC3H10 ARHGEF12 PCYT1B ZC3H13 ARHGEF18 HELZ SMAD9 SSH1 SSH2 DNMBP RNF103-CHMP3 ADGRF2 CAPRIN2 FGFR1 CDHR5 ZCCHC2 DOCK7 MIDN DOCK5 WNT2B KLHL18 C5AR2 CACNA1D ETS1 ETS2 LTBP2 IGF1R ARHGAP23 PODXL SBF2 QSER1 DYNAP RUBCN ZFHX3 SMURF1 SETD1B NFKBIZ PILRB HUNK ETV6 IFNE SPDYE2B COL7A1 MAP6D1 PDE3A RBMS2 USP20 PLEC H6PD GSK3A NPR2 USP35 TNFAIP3 MTR CHD3 CHD2 HK2 RAI1 FAM83H FAM83G PDLIM4 ZNF670-ZNF695 UBE2Q1 NRIP2 SYMPK LONRF2 WNT4 ZNF189 SPEN EYA3 EYA4 KCTD1 USF3 TBX18 IRGQ TIAM2 SNTB1 FAM155A PALLD GFOD1 MYO15B SLFNL1 SAG POMK SPRY1 NRDE2 TRIB1 COLEC12 KDM3B LAMA5 TUFT1 ATP2A2 THBS1 CBL CLN8 FLCN GNA12 DIP2B MAPK1 Mock v SARS-CoV-2 Calu-3 s1 24h polyA GSE148729 down HOMER2 DNAAF3 AHNAK2 EID1 SCD GPR160 VOPP1 VIM CDK14 CKLF CYFIP2 PGAP3 STAU2 AHNAK NCAPG TPGS2 ASAH1 DPYSL2 FAM168B DPYSL3 PLCE1 ANO10 SPOCK2 SAMD1 SAMD13 GTSE1 FDFT1 SNCA ABCA2 FZD2 CHST9 ABCA3 PRR11 PLK1 TNNC1 ERLIN2 PRKCA AIF1L DHFR SQLE GJB1 VANGL1 FASN SAPCD2 TCN1 PPT1 FARSB UNC119B RPL3 HACD2 CDCA3 TTYH3 CFI TFRC CDCA7 PRKDC GNS HACD3 TRIOBP SMC2 MYLK GCSH ADH5 PRDX3 C5 ALCAM STMN1 CEP70 SCP2 PRKAR2A PDGFD KCNMB4 PRKACB PROM2 PRKACA GSTM3 ANXA2 ANXA4 NDC1 EMP2 IFT122 SUMF1 LYZ LRRC20 CENPF CENPI VEPH1 PXMP4 TMEM106C PAM PIGN MGLL CDKN3 ERGIC1 SERPINA3 SERPINA4 PARPBP PIF1 KCNC4 ABHD2 RASAL1 IQGAP3 SERPINA5 FAM149A ACAT2 ERMP1 LDHA SH3BGRL2 CEP55 DLGAP5 MBNL3 ODAM CIT FARP1 TMEM59 HADHB RNF128 SLC39A10 NCAPD2 OAT C11ORF54 RPLP0 PYGL TUBA1A IMPA2 NUF2 METTL7A ANXA9 METTL7B MDH1 APPL1 FADS2 APPL2 FADS1 SRD5A3 TPM4 SEMA4G ATP11A MOB3B OLFM4 PDCD4 DHCR7 ROR1 DSC3 UGT1A10 VTCN1 PLXND1 CTNND2 UCP2 PAPSS1 PAPSS2 LAPTM4B SC5D TPM1 CHP1 SPP1 ACSS2 SLC16A5 KPNA2 ATP9A PCYT2 NEK6 BNIP3L C11ORF80 PHKB NBEA CYS1 ADRA2A LSM7 REEP6 PITPNM3 BIRC5 GPR107 PCYOX1 TMEM19 NOTCH3 PFKFB3 SLC26A2 MAZ INSIG1 ARL3 AK4 MSI2 HNMT TM7SF2 GOLIM4 MPC2 UROD PMEPA1 CNTNAP3B NEK2 ROS1 PLS1 RAB4A AP2M1 COA3 ACTR2 HMGCS1 LANCL1 NEB DHCR24 NIPSNAP1 BICC1 NPC2 MGAM2 CPD MCM6 TMBIM6 SERINC5 SLC25A1 GLO1 HMMR EFCAB11 PSAP DSEL PGK1 ACP6 CCDC34 BCAS1 SMARCC1 MMAB CYP51A1 NDUFA2 MBOAT2 SYT16 CTDSPL TSN TPD52L1 ASPM MYO1C MYO1D EIF3L SYT12 KCTD12 CTXN1 UGT2B7 ITGB1 ARHGAP11A ITGB6 ITGB5 SEMA3E ITGB4 SRI KIAA0100 ETFB PPM1L ATRAID PBXIP1 CXXC5 STK32A GM2A RNPEP ITGAV DCAF11 TNFSF12-TNFSF13 SLC25A23 CACNG4 DYNC2H1 BRI3BP ECH1 SLC12A2 TM4SF4 SMARCA2 CDC20 MALL FRAS1 ANP32E SUCLG2 KIF20A WBP1 LRP1 PLEKHB1 CSN3 CARHSP1 SEPHS1 RACGAP1 NIPAL3 TGOLN2 DAG1 TBL1X IARS2 XRCC5 VAT1 CYP27A1 ALDH7A1 TPX2 TNNT1 WNK2 GNPAT SDC1 TAGLN2 ITM2A CFTR MAGED1 ACSM3 PTTG1IP HTATSF1 LGALS4 KIAA0930 TSPAN8 ARL6IP5 TSPAN6 PDK1 ARSD CCDC115 KRT10 GNG12 VAV3 PTPRF CLDN10 PTPRB VWA1 DEPDC1 FAM20B AKR1B10 CD24 TLR5 MEGF8 TOP2B PTPRU PTPRS SLC44A4 VGLL1 TRAM1 DTYMK MAOB SLC44A3 TOP2A KLK6 PCSK9 CD99L2 KIF12 EVPL CTSV ACACA PPP3CA NNT MAGT1 NPC1L1 MLEC TNFAIP8L1 KIF1C CTSH CTSD VKORC1 SORT1 TTC3 UBE2E3 AKR1C3 SORBS2 PGRMC1 MPP7 SVIP ESYT1 HNRNPUL2 KCNQ3 TCEA2 CD46 SPC25 CD63 AHCY MEGF6 NUDT3 PTMS CRIP2 SPAG16 NUSAP1 RARRES1 G6PD TGFB2 UBE2C LMO4 TRPV4 SGO2 EEF1A2 EEF1A1 TMEM256 ARHGAP33 ILVBL CYP24A1 BUB1B KIF4A SPNS2 TGFBI COX20 CAPS GALNT12 CELSR1 SCNN1A AURKA HSD17B8 TOMM20 NDRG3 ATP1A1 NDRG1 GALNT10 RAB40B CAPN5 PERP PTTG1 DNAJC22 GPC4 HCFC1R1 MYH10 REPS2 FDPS SREBF2 IDH1 EPHX1 IDH2 DSTN TBCD KIF23 SSH3 TMEM230 DARS2 ACSF2 SDK1 TMEM237 MATN2 CHMP3 FGFR4 MXD3 FGFR3 MXD4 COX16 ROGDI LTBP3 CACNA1D TRHDE IGF1R CCNB2 EBP CCNB1 FAM162A ALDH3B1 MAN2A1 ACAA2 HADH GGT1 COX11 ABCC4 HGSNAT CBX7 SUN2 MMP7 CBX6 CBX5 CMTM4 CAV2 CMTM6 CAV1 GALNT1 DNM1 RBL2 EEF1G MNS1 IDI1 RTN3 GPSM2 PSMD10 DNAH5 ABCB1 NCAM1 HMGB3 LMNB1 SLC3A1 HMGB1 DBI CHD3 HS2ST1 SYNGR1 LASP1 UPK1B VILL MAN1A2 CA9 HSDL2 ANXA13 TBC1D9 ANXA11 LSS FAM168A PSRC1 TBC1D5 CAT PIK3IP1 PDE5A MVD STEAP4 THRA HMGCR MSMO1 SH3YL1 CRYZ NT5DC2 OXCT1 POLD2 PALMD MAPK3 Mock v SARS-CoV-2 Calu-3 s1 24h polyA GSE148729 up PCGF5 MX1 MX2 AFAP1 DICER1 FRS2 PSMB9 KIAA1217 TEP1 CYP1A1 RBCK1 CPEB4 CPEB3 IDO1 OPTN CDK17 ATF3 ZNF274 SAMD9 BACH1 BACH2 CD2AP APOL6 IFNL1 GTPBP1 IFNL3 IFNL2 GPBP1 FLRT3 PPP4R4 GBP1 APOL2 GBP3 HES4 ST3GAL2 APOL1 GBP5 APOL4 EPSTI1 ZNF267 APOL3 GBP4 BATF2 FZD4 DNAH17 BAZ1A MASTL FOSL2 MOV10 FA2H FOSL1 IL22RA1 EHD4 PLSCR1 PSME2 LGMN PSME1 PRKD2 HLA-DRB3 CFAP57 CFB HLA-DRB1 CFH BCL10 TAPBPL BAZ2B C3 IL4I1 RNF213 NUB1 ZC3H12A CYP2B6 ZC3H12C NKX3-1 IER5 DUSP5 PNPT1 GSDMB JUN DUSP1 PHF11 CCL20 SEC16B IL10RA TTC9B DUSP8 ITPKC CYLD RNF149 ZEB2 HLA-DQB1 REL ZC3HAV1 ENDOD1 ADM AREG BBC3 TRIM5 RIPK2 BRD2 SERPINB2 ZNF462 STAT1 STAT2 TMEM62 SERPINB9 DAB2IP PELI1 HBEGF ZNF697 CDKN1A COL11A2 OGFR TMEM140 PTGS2 IFIH1 PSMB8 HLA-DMB NAMPT SMCHD1 HLA-DPA1 RICTOR JAK2 GPT2 KRTAP4-6 TAP2 TAP1 PNRC1 MOB3C HIPK3 CXCL10 CXCL11 TRAFD1 LY6E ZNF317 ADAM8 PPP1R15B COL16A1 CSF3 CSF1 PPP1R15A TNF ZBTB20 FOXO1 ZFP36 HAS2 RNF19B RAB24 UBN2 LAMP3 NPTX1 GRB10 HLA-DOB MAP3K8 MB21D2 SLC15A3 TRPC4 BTN2A2 IGFBP4 FST TRAF1 TNFRSF10B TNFRSF10A NFKB1 NFKB2 RCAN1 MAFF MYD88 NT5C3A MAFG XAF1 SP140L BIRC3 INO80D ANKRD33B CD274 FMR1 CNP KMT2C CDC14A RLF SAT1 STK10 SESN2 ABL2 TRIM69 PLXNA2 TNFRSF9 SEMA7A ANGPT2 DTX3L KSR1 EIF2AK2 BDNF ASNS CFLAR SNPH HLA-DRA TRIM56 NFE2L3 GMPR SPATA2 CSAG3 NLRC5 C15ORF48 DUSP10 MDK DNAJB4 PHACTR4 ZNF503 CIITA MCL1 PATL1 SPAG9 ERAP1 ERAP2 KLF4 KLF6 MFSD14A TXNIP TRIM38 PIK3AP1 BLZF1 CEBPB SEMA3A CEBPD TRIM31 UNC93B1 C1S SYNE1 DDX60L PPM1K CXXC4 ITGAM AMBRA1 HDAC9 TNFSF13B SLC25A28 DHX58 CCL5 TRIM25 TLK2 CCL3 TRIM26 TRIM21 ARL5B TRIM22 SP110 ACTN2 RSAD2 ARL14 MMD2 PLEKHA4 EREG PML LAP3 NEURL3 IFI27 XRN1 TRIM14 UHRF1BP1 DCP1A EPHA4 IFITM2 IFITM3 LRP2 IFITM1 SP100 MYCBP2 NOD1 TRANK1 UBE2L6 C4A PSMB10 HERC6 HERC5 NUAK2 IFI16 NOCT FLT3LG CHAC1 B2M SLC12A7 CCNL1 N4BP1 EGR1 XBP1 APOBEC3G TNFSF15 ARRDC3 GADD45A PLA2G4C ARRDC4 HLA-C HLA-A HLA-B IGF2 HLA-E IFI44 HLA-F SRPK2 PARP14 EXT1 BTC PARP12 ATP4A PARP10 IFI35 IFIT5 IKZF3 IFIT2 WFDC5 IFIT1 IFI30 ICAM1 IFIT3 MED12L MT2A HELZ2 KCNN1 HIVEP2 TNFSF10 LGALS9 NKAIN1 ZBED5 TSC22D2 BTN3A2 BTN3A1 NCOA7 NMI LIF BTN3A3 RGMB IL1A BST2 CEACAM1 THEMIS2 KRT17 ID3 GLCCI1 TLR3 CSRNP1 CITED2 SDC4 SECTM1 STC2 NEDD9 ADRB2 CX3CL1 CTSS SOCS3 DUOX1 SOCS1 DND1 IL32 PARP3 GCH1 PARP8 PARP9 NEDD1 PER1 B3GNT5 NEDD4 SAA2 CMPK2 CD47 RYR2 IFNA7 PTGER2 DIRAS3 PTGER4 HSCB HERPUD1 RANBP3L SIPA1L2 RSRC2 SERTAD1 IFNB1 MAP4K4 REV3L CD55 ZBP1 CD74 GDF15 GCA KLHL29 CXORF49B ARHGAP24 IFI44L ZNFX1 FAP FAS OTUD1 CD68 TYMP DCLRE1C ODF3B SLFN5 NAPA GIMAP2 SLC1A3 ARID4B IFI6 SAMD9L RELB NT5E ASAP1 CMTR1 DDX58 USP43 INHBA ISG15 TDRD7 NR4A3 ISG20 MXD1 GNB4 CARD16 LPA CREB5 ZCCHC2 SH3KBP1 ARHGEF28 LGALS3BP RASGRP3 ETS2 DAPP1 DDX60 TGM2 KCNV1 SYDE1 PDZD2 PODXL UBD SNIP1 PMAIP1 MLKL CYP2J2 TIPARP HSPA6 SMURF1 NFKBIZ NAV2 SHROOM2 ARAP2 ETV3 OAS1 TNIP1 TAPBP ETV7 NFKBIA IRF1 IL6 BMP2 OAS2 OAS3 IRF9 IRF7 NFKBIE CXCL8 UBA7 HSPB8 TNFAIP3 NCALD PIK3R3 CXCL2 TNFAIP2 ADAR CXCL3 CHD2 HAPLN3 CASP8 DNPEP IRAK2 RASGEF1B CASP7 SP140 CXORF49 SCN3A RPS6KC1 CASP1 CPXM1 KDM6A IL15RA FNDC3A PLAUR USF1 HSH2D LTA ACKR4 SPRY2 PTX3 B4GALT5 TRIB1 RTP4 ZNF292 RND3 USP18 OASL SAMHD1 Mock v SARS-CoV-2 Calu-3 s1 4h polyA GSE148729 down SND1 PRELID1 MX1 AP1S1 RPL24 CADM1 DEK HSPE1 RBP5 NECAP2 IDNK PSMC2 UQCRC1 PSMC1 ACOT1 GLA ASF1B LIN9 GHITM CLDN2 ASAH1 PARL PCMT1 UGP2 GPATCH1 IFT74 PSMD4 GNG7 WLS RPL18 FDFT1 PLK4 BLOC1S5-TXNDC5 DHFR ACE2 SQLE GJB1 FAM111B VAMP8 PKIB TCN1 SERPING1 PSME2 PPT1 HBP1 HLA-DRB3 CFB HLA-DRB1 PNMT CFI TFRC RPL34 POP4 CDCA8 TMEM97 RPL9 IPO11 HACD3 LIPA SMC2 PRDX3 ALCAM EPB41L2 STMN1 PRDX2 ZNF20 PRDX1 DNAJC25-GNG10 PROM2 CYB5R1 BTF3 ANXA1 ANXA2 RMI1 TMCO1 MRPL27 NUTF2 LYZ SIRT2 MRPL23 ADI1 C4ORF3 HLA-DQB1 PIGK CENPN CYB561 MITD1 ERGIC2 ARF4 SERPINA3 ADK RBM8A CLTC OAZ1 SKA2 SERPINA5 ACAT2 RAD51AP1 LDHB TIMP2 TIMMDC1 STAT1 SERPINB1 GSTO1 SLC39A11 GATC HSBP1 MRPL48 ADAM10 RNASE4 LRG1 MRPL47 BAAT TMEM59 PSMA4 PSMA5 GATM FABP5 BDH2 PSMA2 PSMA3 SLC39A10 IVD NUCB2 DLD MSRB1 OAT GRN NDUFA12 PIGR NDUFA11 TUBA1A CENPA PSMB7 TMSB4X UBL5 HLA-DMB FCGRT NSDHL ADAM28 PSMB3 PSMB1 GPNMB AGR2 MDH1 HLA-DMA IKBKE PAIP2 BCHE SUPT16H RPS9 PRRX1 AGT CDC25C MORF4L1 MORF4L2 COPS4 CNOT7 OLFM4 HAT1 MSH5 ANKRD22 ADAM9 SNRPG COPS9 CNIH4 UGT1A10 RAB1B FKBP3 VTCN1 TSPAN31 PARK7 CLU HSP90B1 LAPTM4A SPP1 ZNF425 CDC123 KPNA2 IK FANCI TMEM132A IGFBP3 AIP M6PR CYP4F12 LSM3 NDC80 GGCT SCCPDH NACA SMO ERH GPR107 TPP1 SP140L PCYOX1 RNASEH2A NOP10 GMNN INSIG2 FAM107B ARL2 PHB ARL1 SAT1 HNMT TM7SF2 CYP2C18 SESN1 MPC2 EIF4EBP3 SAC3D1 CYB5B ACTR2 RFC4 GPX2 RFC1 COMMD10 NDUFC2 PPP5C DNAJC8 BCL6 CDK1 MCM5 ACO2 MTFR2 MCM6 DCTPP1 SERINC1 TMBIM6 ZNF512 MCM2 ST6GALNAC1 NDUFB9 NDUFB6 SNAP23 GLO1 CBWD3 MCM10 CBWD2 APIP ZMPSTE24 PSAP SLCO1B3 PGK1 LBR BCAS2 NDUFA9 NOP58 TRIQK NDUFA6 UGT1A1 NDUFA4 NDUFA2 RPL35A NSMCE2 NDUFA1 PRC1 RNF20 VPS41 ZNF738 DRG1 SEC11A HDAC1 ETFA ETFB PBXIP1 HSD17B11 ZBTB42 USH1C SUMO2 MIEN1 SUMO1 PTER UGT1A6 DCAF11 DCAF13 POLR2K EIF2D DUT ATP6V1E1 IFRD1 ESCO2 SLC12A2 TM4SF4 SMARCA2 ASS1 GSTZ1 IFI27 CALM2 CALM1 PLEKHB1 CSN3 ITIH2 AQP1 RGPD5 NTN4 HERC6 RPL36AL SNRPD2 AAMDC ATXN7L1 B2M EXOSC1 TMED9 HLA-C MIF HLA-B COMMD2 HLA-E IL17RB RPS26 ITM2A RPS25 APOBEC3B CFTR IFI27L2 BEX3 ANP32A MAGED2 CTDSPL2 LPAR4 IFI30 IQCJ-SCHIP1 COMMD9 RPS19 TSPAN8 ARL6IP5 TSPAN6 ACAD10 TNFSF10 TSPAN1 ATP6V1C1 CCDC115 NME5 ZWINT VAV1 NME1 PDZK1IP1 ANLN ID3 CCNG1 CALU CLDN18 AKR1B10 CALR SGK2 CD24 SLC44A4 COX7C CETN2 TMPRSS4 TOP2A MRPS10 KRT23 TNFRSF11B NEDD8 CTSV IER3IP1 CTSS CTSO MAGT1 SEC61G MLEC TMED2 CTSE CLIC1 BCL2L2-PABPN1 ATP6V0E1 PARP4 C17ORF49 RPA2 MRPS22 CACYBP AKR1C3 QPCT TTC1 THOC3 PGRMC1 RAB11A LIMA1 SPCS2 NDUFAB1 CANX TCEA3 CTAGE15 MAPRE2 FEN1 CD63 GBA AKR1B1 MRPS33 MKI67 CAPG CST6 SPTLC1 OS9 RAC3 CD59 RARRES1 GABRP CD74 APLP2 KLHDC2 NOSIP GOLGA6L4 AIG1 EEF1A1 ISCU PPIC PPIB POC1B-GALNT4 CAPS PCNA ZWILCH SLC1A1 MRFAP1 EMC4 SPTSSA NDUFV2 FGF23 PDIA3 SLC30A9 KIF23 CYBA ISG15 EIF2S3 PDIA6 SDCBP CREB3 KIF18A ADGRF1 ZNF93 TMEM9 UBA3 STT3A MUC20 BLVRB CHMP5 ATP6V1D COPA CCDC125 DDX1 PLAU PSEN1 SRP14 SLC2A6 HIGD1A MYDGF NME1-NME2 ZMAT2 UBB UBD COX15 GGT1 MMP7 RHBDD1 OAS1 IQCK IFT43 POLA2 TMEM213 NDUFS5 CYCS ATP13A4 FAM72C IDI1 RTN3 PSMD14 HMGB3 LMNB1 SLC3A1 HMGB2 DBI CXCL6 GMPPA YWHAQ PDLIM5 SDR16C5 FAHD1 TIMM8B RRM1 GLRX2 SGPP1 GALC ALDH1A3 RGS12 CCDC167 DCTN6 PCDHGB7 HMGCR CRYZ HMGCL HPF1 MAT2B ALDH2 PRRG3 PALMD CHCHD2 Mock v SARS-CoV-2 Calu-3 s1 4h polyA GSE148729 up WSB1 PCGF3 GATAD2A CD3EAP DKK1 PRKAB1 GATAD2B CHFR CAPN15 PCDHGA12 MEX3C CPEB2 MARCKS ARMC5 SPIN2A CDK13 ASB1 ZNF277 ZNF155 MT-ND5 TRIM16L MAML1 MSANTD4 SNX33 NPIPB11 MT-ND4 SCAF8 ZMIZ1 CLP1 MYC SNX27 MVB12B PXDC1 UBASH3B HES1 ST3GAL1 FBRS ZNF267 HEMK1 ZBTB7A ZNF264 JAG1 PHC2 DMPK ZNF140 NR1D1 MSH5-SAPCD1 FERMT1 ZNF559-ZNF177 ABTB2 FOSL1 FAM160A2 GJB3 C12ORF49 C6ORF89 CTAGE9 CTAGE8 KDM7A PRR15 CHST3 ZNF134 CDC42SE1 POM121 GABARAP SCHIP1 MT-ND4L ZNF625-ZNF20 PDGFB RAPH1 ALKBH8 GATA3 FAM135A MYSM1 WDR47 ELK3 ZXDA PCNX4 RNF215 DSTYK ZC3H12B IER2 LRAT JUNB IER3 DUSP5 DUSP6 JUN DUSP4 SHPRH DUSP1 RING1 PHF13 TET2 TRMT5 DCBLD2 NCOR2 BHLHE40 PI4KB AGO1 RARA RAPGEF6 AVL9 TMEM106A GMEB2 GRAMD1A KCNC4 PHF23 RASAL1 ADO HSPE1-MOB4 CASP10 ATXN7 PLLP DLGAP4 HMGXB3 CIC ZNF343 BRD2 ZNF581 ZNF460 WNT7A AEN F3 ADAM19 CLIP2 APEX2 FOSB MAP1B ANGPTL4 PELI2 ZNF579 HBEGF ZNF697 ZNF574 CDKN1A RARG GRAMD4 FSTL3 C16ORF72 ZSCAN32 NKRF C18ORF25 MPRIP PWWP2A CHN1 SLC17A9 DMD NFRKB ANKRD50 ZSWIM3 ZNF202 PHLDA1 FBXW7 SEMA4C TPM2 DIO3 MAP1LC3B2 TICAM1 TEX2 RNF41 LRFN4 LRFN3 ZNF316 ZNF675 NUTM2D PPP1R15B PHLDB1 PLXND1 PPP1R15A AHR EGFR RNFT2 CDH6 ZFP36 ITPRIPL2 ABLIM3 NACC1 RBBP6 HAS3 SLC25A44 PHLDA2 SIAE IGFBP4 FST TNFRSF10D SYS1-DBNDD2 DYRK1A HPS6 KCNAB3 PIAS2 RNF169 FRMD5 FRMD8 SYNJ2 NOXA1 CDC42EP3 CDC42EP2 MDM4 MAFK PHLDB3 YRDC PFKFB3 CD274 SLC26A2 RHOBTB2 KRBOX4 PMEPA1 ABL2 FBRSL1 TRIM65 SEMA7A SETDB2 ITGA2 KCNJ15 FOXL1 QKI MSL2 ARL4C CDK6 NF2 GTF2A1 BCAR3 ZC3H4 RASGRF2 C3ORF52 FBXO46 DUSP18 FOXK1 BICD1 BICD2 RHOT1 ADAMTS15 DVL1 ZNF628 TRIM47 C21ORF91 ZNF623 SKIL EVI5 IP6K2 CEP170 MCL1 NCKAP5L COL27A1 FKRP CPT1A FEM1B FEM1C NICN1 SPDYE6 FBXL14 KLF5 LENG1 ASXL1 KLF7 KLF6 MCM3AP ZNF619 KIAA0586 POLR1E NPIPB5 CRK NPIPB3 PLEKHG1 TSSC4 ITGB6 FURIN FHL3 AMBRA1 SYNGAP1 POLR2A PPP1R13L TNFSF12-TNFSF13 PLEKHH1 ZNF841 EPHB2 CDON ACVR1 IFITM10 RUNX1 TMCC1 FAM76B EPHA2 SIK1 TRIM11 RIN1 TMEM63B AQP7 RGPD6 PPP1R3B ANTXR2 CRKL DHX34 NIPAL4 DHX37 C22ORF23 E2F3 SUSD6 NUMBL SRGAP2C EYS EGR1 GTF2H2C 2 PPP1R26 GADD45B GADD45A EAF1 CSNK1E NUAK1 INTS5 SIM2 TCERG1 PPP1R18 PIEZO1 SLC22A3 DCUN1D3 NLK GSPT2 IFIT3 GOLGA3 RASSF1 SOX4 RUSC2 MICAL2 MICAL1 EPC2 SOX9 PPP1R10 ZNF800 CDR2 KBTBD11-OT1 FOXD2 TSC22D2 TSC22D1 LIF NBPF10 RHOF RHOB VEGFA RGMB PTPRE IL1A IL1B RAP2C CTRL KRT17 SLTM ARHGEF2 CSRNP1 CSRNP2 FOXC2 ARHGEF1 NEDD9 SOCS3 MFSD4B DPH1 ZYG11B SVIL RFTN1 RFTN2 ZFX MN1 PDP2 TPST2 DLC1 B3GNT5 ERRFI1 ZDHHC21 TRAF3IP1 AMIGO2 MIA2 ZDHHC7 SLC20A1 SH3RF1 ARNTL2 AKAP12 SERTAD2 ENC1 IFNB1 DCPS HS3ST1 FBXW10 UBE2F ARID3B GRHL2 KLHL21 DOK3 TBL1XR1 BAMBI TBC1D20 MYADM AMOTL2 OTUD4 RELA RBM48 ZFP36L1 ASAP2 INPPL1 EFNA5 CMIP ZFP36L2 NT5E SH3TC1 TAF1D GPC4 NPHP3 EP400 NDUFV3 SASH1 CARD10 TGIF1 ARHGEF18 MSANTD3-TMEFF1 INHBA MRGBP CAPRIN2 TCF7 FGFR1 TAB2 ZCCHC2 MIDN AMY2B KLHL15 PXN DYRK2 KLHL18 SLC2A1 ETS1 CAMSAP1 CAMSAP3 AMMECR1L POGZ ZMAT3 ALDH3B2 CCDC120 BCL9L PDZD8 RPP38 BCKDHA KDM4B URGCP ZFHX3 SMURF2 SMURF1 IRF2BP2 HMGA2 FAM86B1 NAV1 IRF2BP1 URB2 ETV3 EPN2 NFKBIB RASA1 IL6 HOOK3 DNASE1 AGAP9 COL7A1 PDE3A RBMS2 SOWAHB PLEC MAST3 TNFAIP3 DTX2 CHD1 RAI1 FAM83G PDLIM4 RASGEF1B TMEM189-UBE2V1 CFAP44 KDM6B PDPK1 LCA5 PLAUR USF3 CNBD2 DDIT4 INAFM1 SPRY4 SPRY2 TAF7 KRAS TRIB1 NXN DDX28 KRT80 ZNF174 SOWAHC TUFT1 THBS1 KANSL1 CBL ZIC2 GNA13 PTK2B DIP2B POLL Mock v SARS-CoV-2 Calu-3 s2 12h polyA GSE148729 down SND1 CADM4 BTBD19 STARD9 DAW1 UPB1 CYP1A2 ORAI2 ASTN2 IDO2 ZNF397 C1ORF198 NUGGC ADCY2 GABPB2 CLDN2 CRACR2A KIAA1328 GPR155 SV2B FLRT2 SNX27 GNG7 SPOCK2 STOM GPR157 C2ORF83 PPARGC1B PROSER3 GPLD1 ST18 PRR11 APOOL EDEM1 TNNC1 CYP4F3 TMEM192 ERLIN2 TEX15 ABCA9 CYP4F8 ACE2 SLC6A8 HOGA1 TCN1 PPT1 HAMP NANOG GNE XKR4 CHST6 HACD2 ZBTB8B ZBTB8A TTYH3 TFRC ZNF492 GNS ABCA13 HACD3 LRPAP1 ADH4 CYB5R3 ZC3H12D SULT1A1 GALR1 PDGFD AP1S3 PCDHA4 LRAT PROM2 AS3MT PROM1 PRKACA GSDMA KCNB1 FUCA2 GP2 ADAM32 LYZ PLXDC1 FAM234B LYRM7 PIGN PIGM GAS7 MGLL ITK GABRB3 SERPINA4 MEFV ZNF471 HIF3A TMEM164 C12ORF45 GLG1 LRRC2 MRPL42 ATXN3 SHH TTPA LHPP PNPO TIMP2 ZNF347 ZNF587 ABHD14A-ACY1 PPARA PLIN1 SERPINB1 TMOD3 GATC SLC2A10 SNX22 WTIP GTF2H3 POU5F2 PRSS33 TERB1 RNF125 TM9SF3 MIPOL1 MORN1 RNF128 SLC39A10 IVD ANGPTL4 SCRG1 PLIN2 SLC29A4 OAT MYT1L LRRC19 PIGR MPV17L TCF23 KCNA7 RCSD1 ADAM29 TMEM47 TCTN2 ADAMTSL3 METTL7A JAK3 SLC16A1 USP8 COL28A1 GSR TFPI2 PCDH9 FBXO15 FAM227A CYBRD1 POU2AF1 TUBA4A DISP2 DCDC1 SLC9A4 OLFM4 LGSN ITGA11 TRABD2A ADAM9 ZNF556 SLC28A2 PPIL6 UGT1A10 ZNF793 KCNG4 ALDH1L2 ALDH1L1 CRCP VTCN1 ATP10B JAKMIP2 BEST1 CDH7 CDH6 CYSLTR1 SLC16A7 MACROD2 RAB29 RHBG SLC16A3 ACSS1 F2R BNIP3L TMEM120B IGFBP3 CES4A MOB1A GOLGA6C ZFP42 SLCO1A2 FSCN1 GPR107 PCYOX1 PPEF2 IFNAR1 SYAP1 NOTCH3 TRIM72 FTO LY6K PARM1 ZNF891 RAB3B KCNE3 GSTT2 OLFML2A GOLIM4 FGF5 RHOBTB3 ZNF528 EFHD2 PLS1 AP2M1 FN3K SLC14A1 CTCFL KCNJ6 ACTR2 LANCL1 TNFRSF19 TXNRD1 KCNJ16 GNL3L MGAM2 SLC26A8 PECAM1 MTFR1 DSG2 DSG3 TMBIM6 MMACHC ACO1 CPM SERINC5 KCNK6 MCFD2 L3MBTL4 CCDC27 USHBP1 DUSP19 NLRC3 SPN KLC3 PSAP DSEL SLCO1B3 PGK1 MROH7 BCAS1 UGT2B15 SORL1 GABRG3 SYT12 SYT11 MGAT4C OR11A1 SEC22B LEPROT MYLK3 DRAXIN SLC24A4 LUZP2 HSD17B13 FCAR PBXIP1 SYNE3 TTR CNNM1 GANAB SGCB P2RX5-TAX1BP3 SLITRK5 OPA3 UGT1A6 ZNF844 BCO2 NPIPA5 SLC35A3 ARL10 LRRN3 TM4SF4 VWA5B1 ZNF835 ZNF714 ZNF713 AHCYL2 CCDC69 PLEKHB1 IL21R TRMT2B AQP1 PEX26 EXOSC6 NIPAL3 SLC11A1 FAM78B ST8SIA4 SLC6A14 PAPPA XRCC2 ACER3 TNNT2 ZNF814 TLCD2 ITM2A ITM2C APOBEC3C FUT11 TSHZ2 FCF1 WFDC1 WFDC2 BRCC3 TNS1 PGBD4 KIAA0930 TRPM8 PDK1 SEC62 TNS4 ATP6V0A2 ARSD SLC35E3 NXPE3 LILRB4 GNG12 KLK11 KIF6 PDZK1IP1 CLDN10 UGDH TFAP4 ALDH6A1 KITLG CEACAM8 CALU ZNF780B AKR1B10 CD24 CTRC IGSF6 SLC44A4 OPRD1 KLK2 MOGAT3 TMPRSS4 STC1 KLK6 FITM2 CD3G PCSK7 MEDAG MFSD4B NNT MAGT1 SEC14L5 KRT26 MLEC GNPNAT1 TMED4 QSOX1 TMED2 CTSE VENTX PAG1 SLC35G5 SORT1 MCCC1 NCR3LG1 ZDHHC15 PDP2 DNASE1L3 RYR2 RYR3 FKBP14 GPALPP1 LILRA2 MCF2L2 DZANK1 PNMA2 SCML4 CREG2 PTCHD1 PTCHD4 RARRES1 CA12 CD74 RUNDC3A CHRNB4 CRTAM APLP2 ALG14 SLC31A1 ARHGAP28 ALG11 TMEM130 SHISA9 LIN28A ZNF70 NUPR1 MELTF KLRD1 CD84 MASP1 ICA1L KLHL33 SCNN1A PRKY SLC1A6 ATP1A1 CNDP1 NDRG2 NDRG1 TMEM245 HSD17B2 DNAJC22 FRRS1L PAK3 GGT6 ACBD7 CD96 PCYT1B DENND2C ZNF99 MR1 EIF2S3 SMAD9 NAALADL2 MAVS TCF7 FGF13 FGFR3 VIL1 CCDC122 WNT2B LRRC74B PCDH11Y C5AR2 CYP46A1 PLCXD3 PLCXD1 FAM186A DTWD2 SBF2 PAIP2B PRODH BCKDHA CBX6 PCDHGA6 PCDHGA5 GALNT3 TMEM212 TMEM213 CYP27C1 MS4A2 RBMS3 TMEM45A TTC22 MAST3 ABCB6 RPAP2 HS2ST1 SCIN FAM83F DBT AFMID CA5A FAM83A DACT3 CCDC180 SCN3B CXADR CCBE1 DAPK2 SLC4A8 JSRP1 ACKR2 GALM SNTB2 PCDHGB7 PRKCSH PCDHGB5 CAMK2A CCDC169 NCMAP GRM2 CRYZ CLMP ALDH2 CNR2 NT5DC3 MAN1C1 BNIP3 ZPLD1 BPNT1 CRYM Mock v SARS-CoV-2 Calu-3 s2 12h polyA GSE148729 up PCGF5 MX1 MX2 RC3H1 FRS2 GTPBP2 PSMB9 CPEB2 RUFY4 RBCK1 CPEB3 PI4K2B IDO1 OPTN CDK17 ATF3 MTMR3 ZNF274 SAMD9 MT-CO2 MT-ND1 CH25H MT-ND2 APOL6 IFNL1 IFNL3 IFNL2 GPBP1 FLRT3 PPP4R4 GBP1 HES1 APOL2 GBP3 EPSTI1 RNF111 ZNF267 APOL3 GBP4 BATF2 ZNF140 FZD5 PRKCE PLK2 KLF10 INO80 MASTL ZNF16 FOSL2 MOV10 LATS2 ABTB2 IL22RA1 PLSCR1 CTAGE4 CTAGE9 MT-CO3 PRKD2 PRR15 CFB CFH ZNF625-ZNF20 GATA6 BAZ2B GATA3 FAM110B RNF213 NUB1 TBK1 ZC3H12A ZC3H12C PIP5K1A NKX3-1 IER2 JUNB IER3 DUSP6 PNPT1 JUN DUSP1 PHF11 CCL20 SEC16B C6ORF62 DUSP8 ITPKC ZEB1 CYLD MTF2 BHLHE40 CLCF1 REL ZNF597 YTHDC1 ZC3HAV1 ADM BBC3 TRIM5 RIPK2 ZNF224 ZNF222 BRD2 STAT1 CDKN2B STAT2 MTRNR2L12 ANKHD1-EIF4EBP3 FOS MTRNR2L10 GTF2H4 DHRS2 FOSB PELI2 PELI1 ZNF217 ZNF211 MTMR10 OGFR TMEM51 TMEM140 PTGS2 IFIH1 PSMB8 ING3 RICTOR ZNF205 ZNF689 PGLYRP2 ZSWIM6 ZSWIM3 JAK2 ZSWIM4 ZNF564 FBXW7 MAP3K1 BRF2 ZBTB17 TAP2 MITF ZBTB10 TAP1 TICAM1 RAB30 PNRC1 MOB3C CXCL10 CXCL11 ZNF436 SLC28A3 SQSTM1 ZNF433 PPP1R15B ZNF672 COL16A1 CSF2 CCNT2 CSF1 GTF2B PPP1R15A AHR TNF FAM214A RNF31 ZFP37 ZFP36 RBBP6 RNF19B LAMP3 RBBP8 MAP3K8 MB21D2 SLC15A3 TRAF1 FBXO38 FRMD4B DYRK1A RCAN1 MYD88 MED26 NT5C3A TRAF4 ZNF416 XAF1 SP140L MAP3K14 BIRC3 ANKRD33B KMT2E CD274 FMR1 CNP RLF SESN2 ZNF649 TRIM69 PIM1 PIM3 BMF ZNF764 DTX3L SETDB1 EIF2AK2 BDNF MSL2 BCL6 BCL3 ARL4A NFE2L2 SHOX2 PLEKHF2 GMPR SPATA2 NLRC5 DUSP16 PTBP2 DUSP10 ZNF627 DNAJB4 SKIL UBE2F-SCLY REC8 CPT1B KLF4 KLF3 HAND1 SNRK TXNIP ZNF613 TRIM38 RP9 TRIM34 SEMA3A TRIM31 AKAP8L DDX60L PPM1K ITGAM AMBRA1 SLC25A28 ZNF606 DHX58 TRIM25 TLK2 TRIM26 CCL2 FBXO6 TRIM21 ARL5B TRIM22 C3ORF38 SLC25A25 SP110 RSAD2 ARL14 PLEKHA4 YOD1 PML LAP3 NEURL3 IFI27 XRN1 TRIM14 ZNF830 IFITM2 IFITM3 IFITM1 SP100 GORAB STX19 NOD1 TRANK1 RGPD6 UBE2L6 C4A HERC6 HERC5 NUAK2 PARD6B IFI16 E2F3 ZNF823 ZNF821 CCNL1 N4BP1 EGR1 EGR2 RABGAP1L GADD45B ARRDC3 HLA-B OVOL1 IFI44 HLA-F PARP14 EXT1 TOPORS PARP12 PARP10 INTS6 PLPP3 NPFFR2 JMJD1C IFI35 IFIT5 THUMPD2 IKZF2 IFIT2 WFDC5 IFIT1 IFIT3 MT2A SOX4 HELZ2 EPC1 MIER1 HIVEP2 TREX1 SOX9 PPP1R10 TNFSF10 TP53BP2 LGALS9 CDR2 EDN1 IL15 TSC22D2 BTN3A1 NCOA7 NMI BTN3A3 RHOB IL1A BST2 THEMIS2 KBTBD2 TLR3 CSRNP1 RRAD SECTM1 NEDD9 ADRB2 CX3CL1 SOCS1 UGCG ZMYM2 UIMC1 NFIL3 IL32 ZDHHC14 PARP8 PARP9 DLC1 PER1 CMPK2 ERRFI1 MTRNR2L1 PTGER4 MTRNR2L6 CXCR5 MTRNR2L8 SERTAD2 SERTAD3 RSRC2 SERTAD1 TLDC2 HDX IFNB1 TBC1D22B FILIP1L GABRE LMO2 ZBP1 GDF15 ARHGEF38 VCAM1 IFI44L ZNFX1 AMOTL2 OTUD1 TFAP2A TYMP CD83 ODF3B SLFN5 SFSWAP SLC1A3 ARID4B CWC25 IFI6 SAMD9L RELB ZFP36L2 CMTR1 AZI2 TGIF1 DDX58 USP43 ARID5B INHBA ISG15 TDRD7 SMAD7 MRGBP NR4A3 ISG20 EFNA1 ZNF92 MXD1 CARD16 CCDC130 ZCCHC2 ARHGEF28 RASGRP3 ETS2 DAPP1 DDX60 POGZ PDZD2 SNIP1 PMAIP1 MLKL RPP38 CYP2J2 USP25 TIPARP CBX4 NFKBIZ SHROOM3 OAS1 CLK4 ETV7 CLK2 NFKBIA CLK1 IRF1 IL6 BMP2 ELF3 OAS2 AGAP6 OAS3 AGAP9 IRF2 IRF9 IRF7 ATP13A4 NFKBIE ZNF197 DDX47 UBA7 TNFAIP3 TRPS1 CXCL2 AGAP5 TNFAIP2 CXCL1 ADAR CXCL3 CHD2 IRAK2 RASGEF1B NRIP1 CASP7 VCPKMT PDE4B BDKRB2 CASP1 RBM11 KDM6A FAM83B RBM39 IL15RA TCF7L2 ZNF184 PDE4D LCA5 ZNF180 PLAUR USF1 TIAM2 WEE1 HSH2D LTB ACKR4 SPRY2 PTX3 CCDC174 RTP4 TUFT1 SIX1 PPP2R2A KANSL1 RND3 USP18 NR3C1 OASL SAMHD1 RBM5 TRA2A RBM6 Mock v SARS-CoV-2 Calu-3 s2 4h polyA GSE148729 down ENDOG ACOT8 PRELID1 HOMER3 BAD PIH1D1 DNAAF1 RFX4 C12ORF75 RPL17-C18ORF32 HSPE1 SCAMP3 SPINT2 SCO2 FDX1 ETHE1 FDX2 BAX CKLF SF3B5 PRSS1 PDXK RPL12 IER5L ADCY2 TMEM70 PCMT1 SULT2A1 FAM156B TFPT NTHL1 C19ORF53 DNTTIP1 S100A14 SERPINF1 S100A16 RABAC1 HES4 RPL18 F8A1 CLUL1 MTHFS NR2F6 NUDT16L1 XKR9 GJB1 JTB CLPP PSME2 ITPA SIVA1 PRR13 PKIG HLA-DRB3 GTSF1 POP7 PNMT CFD GABARAP SCOC ZNF492 RPL35 MRPL17 ALKBH7 MRPL14 ANAPC11 MRPL12 PRDX4 NTMT1 ALKBH6 GRIN2B PRDX5 BLOC1S1 C19ORF33 FAM110D NAPRT SMCO4 HMOX2 TPRG1 DNAJC25-GNG10 SFN TIMM17A AS3MT POU5F1B SDF2L1 CENPV LYPLA2 ANXA2 TPI1 SSR4 TESC ZNF32 JOSD2 SIRT2 MRPL22 POU6F2 GIPC1 MZT2B MZT2A PXMP2 HLA-DQB1 CENPM ZNF593 CLTB TIMM13 TMEM160 OAZ1 PQBP1 TIMM10 MRPL36 TRMT112 MRPL41 SSR2 DYNLL1 MGMT CDKN2A MRPL46 COX6B1 PRSS33 PSMA7 NUDT22 PSMA5 FABP6 SDHAF1 ANGPTL4 TSR3 LAMTOR2 ZNF576 MSRB2 BSCL2 CRB3 TP53I13 SFTA2 NDUFA13 TMEM54 TMEM141 MRPL58 OVCA2 MRPL55 PRSS22 TMEM265 PDF LMAN2 UBL5 PSMB5 FCGRT TMEM147 PSMB6 AIFM2 ENSA TSPO JAK3 BID NUDT14 RPS9 S100A2 CTNNBIP1 C1ORF122 YIF1A YIF1B TUBA4A COPRS S100A6 SNRPG SNRPB RNASEH2C FKBP2 TUSC2 PARK7 DEFB1 POTEM BCL2L12 TGFBR3L ZNF428 SAP18 MACROD1 SPP1 PHLDA3 SLC39A3 TXNL4A SERF1A TRAPPC1 IGFBP6 TRAPPC5 AIP METRN LRRD1 LSM3 NT5C3B LSM7 CDC42EP5 DRAP1 PGP PIN4 FTL PHPT1 NOP10 PIN1 INO80C ANKRD16 GRIA1 AK1 EIF4EBP1 ARL2 PHB FBXO27 BOLA2B HSPBP1 VPS72 MPC1 MPC2 UROD EFHD2 EIF3CL IGFBP7 ZNF524 SAC3D1 COA5 COA4 COA3 GPX4 KCNIP3 HAX1 DCTPP1 ZNF511 L3MBTL4 NDUFB8 NDUFB7 TRADD ZFP82 NDUFB2 C1ORF158 PAGR1 MDK PMVK SPR SERF2 COA6 PPP1R14B MARCKSL1 NDUFA8 GADD45GIP1 NDUFA7 UGT1A1 NDUFA4 BOLA2 CPPED1 LAGE3 DAD1 OCIAD2 SMIM22 CCDC61 DRAXIN CEBPD ETFB CYSRT1 MDP1 MIEN1 PRADC1 POLR2F POLR2G ZNF843 UPP1 POLR2J CD320 RSAD2 FBXO2 EBF1 TM4SF4 PSG2 KRT8 MRPS18A RUNX3 MAPK8IP1 IFI27 ZNF716 SLPI ZNF835 MT1G FLYWCH2 PFN1 AMER3 IFITM1 SSNA1 PPP1R35 CISD2 UQCR10 CISD3 AQP5 UQCR11 PYURF MAGOH ZNF709 EXOSC5 SNRPD2 MCRIP2 MCRIP1 EXOSC4 FIS1 COX8A SURF1 ST8SIA1 TMEM50B EAF2 CMC1 MIF MANF HLA-A HLA-B MIP TNNT1 TLCD1 NDUFAF2 CYSTM1 NOL12 CCNO IFI27L2 BEX5 ISCA2 FAM89B ECI1 IFI35 IFIT1 ICAM2 C7ORF50 MRPL2 ZNHIT2 LGALS1 NFU1 APOE FFAR2 PSENEN NMB NME3 AGTRAP MMEL1 KRT14 AKR1A1 KRT13 TMUB1 RHOD NME1 PDZK1IP1 TF KRT19 KRT17 RDH5 TOMM5 COX7C DTYMK MRPS15 MRPS12 CITED4 NOXO1 TWF2 MRPS11 CX3CL1 RRAS CTSH STRA6 CLIC1 OXGR1 TM4SF18 ATP6V0E1 CBR1 VKORC1 ZYG11A C17ORF49 RANBP1 ORMDL2 TTC1 APRT SGSM1 CTU1 TRIML2 RAMP1 CD63 AKR1B1 MRPS34 SRA1 CAPG CRIP2 CST6 PDCD2L PTS CST3 GUK1 RPL18A RAC3 UQCC2 RARRES2 NOSIP CRLS1 RPP25L DPM3 TMEM138 UBE2S RPP21 GOLT1A SLX1A CCDC153 CD68 PPIB RPP25 CAPS RPL26L1 TYMP MPG CD82 NDUFB10 KLHL34 CIB2 IFI6 HSD17B8 FUOM COX6A1 BANF1 EMC7 EMC8 EMC9 BORCS7 FDPS ATP6V0B PAM16 CYBA ISG15 DYNLRB1 CDHR4 CARD19 GEMIN7 MXD3 BLVRB TXN2 PCDH11Y RPS19BP1 MRO TACO1 DNPH1 FBLL1 MYDGF ZCWPW2 ZMAT5 PLGRKT ATP6V1F PCSK1N MMP1 PLA2G2C CADPS C4ORF48 GALK1 IFT43 NDUFS8 NDUFS7 IRF3 DNLZ CYCS IRF7 CUEDC2 MS4A2 BNIPL COPE U2AF1L4 U2AF1L5 PDLIM2 EMG1 SYNGR2 DNPEP C9ORF16 BCL7C ISOC2 TIMM8B DCXR ANXA13 OPRK1 TAF10 TRAPPC6A VGF RBM42 PFDN2 DYNLT1 MVD NAXE PFDN6 ZPR1 AURKAIP1 CCDC167 TSEN34 MEA1 DMKN SLC22A18AS GRM2 LTC4S CHCHD6 EVA1B SPATA24 PRRG2 RBAK-RBAKDN ZPLD1 CHCHD1 CHCHD2 Mock v SARS-CoV-2 Calu-3 s2 4h polyA GSE148729 up LRRC37A3 UNC13B DICER1 SYTL2 C20ORF194 RFX2 FRS2 TMEM81 ATG13 GATAD2B EML5 NISCH RFX7 PCDHB3 ZC3H11A TBPL2 RB1 CGGBP1 MAML1 COL12A1 UACA SCAF8 LURAP1L GPATCH1 CEP95 CYP1B1 MUC6 PLK4 CREBBP STARD13 ZNF260 VPS13D KLF10 NR1D1 INO80 VPS13A ZNF559-ZNF177 GIGYF1 VANGL1 EHD3 LATS1 SETX PLSCR4 FAT1 CTAGE9 PRKCQ HBP1 FREM2 PATJ TRIO ZNF251 MT-ND4L ITSN2 BAZ2A ZNF24 SMC4 FAM135A SMC2 ANKRD20A1 RNF213 KIAA1109 PCNX1 ZNF248 WDR37 SHPRH USP9X OFD1 PHF12 TET3 FN1 TMC8 WNT9A ASH1L BRAF RNF146 CENPF AFTPH BHLHE40 RARB RAPGEF2 CCDC6 KLKB1 WDR26 DENND1B ZNF518A TRIM2 RASAL2 CTCF PEAR1 MED13 MECOM MYO6 ATXN7 ZNF106 TEAD1 HAVCR1 FAM160B1 CSNK2A2 CDKN2B ZNF33A SNX19 COL4A2 FOSB SARM1 TAOK1 PLEKHO2 ZNF217 PKN2 GOPC ENG FRYL SETD5 PHLPP1 SMG1 ATL2 BTAF1 ING3 RNASEK-C17ORF49 C16ORF70 RICTOR BRD9 BRD8 ANKRD50 SETD2 ZNF324 ZNF322 MYLIP NUTM2B MAP3K4 MAP3K1 ANKRD28 BRPF3 PRPF4B BTBD8 ATP11A FBXO11 EMSY HIPK3 CNOT6 RALGAPB TTC30A TTC30B KAT6A CNOT4 ZNF318 SLC28A3 SREK1 DSC2 GOLGA8B PKP1 GOLGA8A SLC25A36 PPP1R15B CCNT2 CCNT1 CEP120 AHR FOXO3 C1ORF112 FGD4 ABLIM1 FGD6 BCL2L11 ZFP36 ITPRIPL2 PTAR1 NKTR ATP9A ZNF420 CCDC18 SEMA6A SLC38A2 OSBPL8 CCDC14 CCDC15 OSBPL3 FBXO38 SYS1-DBNDD2 FRMD4B DYRK1A PIAS1 TRAF6 C18ORF54 BIRC6 ADNP BMP2K INTS6L ZNF532 ANKRD17 IRS1 KMT2A BOD1L1 RIF1 KMT2C PHF21A RLF ZFP62 RHOBTB1 NPEPPS ARHGAP5 GLIS3 NIPBL TPR SESN3 BTBD3 CEP350 BMF ZKSCAN2 PPP1R12A APAF1 SECISBP2L EIF2AK4 MICAL3 NPC1 QKI SON CDK6 BCL6 RTN4RL2 PIK3CA ZNF638 NF1 OGT LCOR SMCR8 TNRC6A CBLN3 SOS1 BMPR2 NFAT5 NUFIP2 ZC3H4 ONECUT2 UBR5 UBR2 DUSP16 BICD1 AMH KIAA0319 FNIP2 MAGI1 DSP PLEKHG5 SRCIN1 OXR1 RALGAPA1 FEM1B DST FEM1C ZBTB38 TP53INP1 RPRD2 SYT16 KIAA0232 KLF3 ASPM ASXL2 KLF7 MCM3AP KLF6 MAB21L3 TXNIP ZNF615 NPIPB4 PABPC1L CSNK1G1 BDP1 TRIM33 TRIM31 ZBTB49 PPM1L PIK3C2A SYNE2 ZBTB41 PSD3 ZNF608 NHS ZNF841 NEPRO DYNC2H1 ACVR1 RUNX1 PLEKHA7 YOD1 MED13L SRRM2 FRAS1 APC XRN1 ULK1 UHRF1BP1 KIF20B RSC1A1 EPAS1 CCDC68 AKAP9 PPP1R3B CBLB CRKL RAB11FIP2 HERC1 E2F3 ZNF700 SUSD6 RIBC2 CCNL1 EGR1 EGR2 C9ORF152 ST6GAL1 ARRDC4 RAB27B IQSEC1 HNF1B WAPL GDF9 TOPORS CCDC88A WNK1 AL592183.1 TCERG1 MACF1 CASZ1 NBPF20 JMJD1C GCC1 SESTD1 GCC2 ZBTB6 PKHD1 FAM53C HIVEP1 SOX9 PPP1R10 TP53BP2 TNS3 RALGPS2 ZBED4 NCOA2 NCOA3 NBPF9 RANBP17 MST1 NBPF11 NBPF12 VAV3 PTPRB KLHL9 KBTBD8 ATR GGNBP2 C2CD5 PTPRK SMIM11A ZMYM2 PCF11 ZMYM4 MAP2 CNTRL PARP6 RANBP2 PBRM1 THOC2 TTC3 ERBIN ANO6 MT-ATP8 ATAT1 TJP1 PDP1 DLC1 AL354822.1 PNPLA7 TACC1 ERRFI1 FOXA1 TXLNG PRICKLE4 RSF1 TRAK1 AKAP13 MT-ATP6 SERTAD2 KIF13B HDX HEATR6 REV3L FBXW11 ARHGEF38 ZFC3H1 LMO7 LIFR MAGED4B MUC3A MID1 TMEM131 TANC1 GPRIN3 ARHGAP32 BUB1B WDFY3 BRWD3 YAP1 PRDM4 ZFP36L1 AMOT ZFP36L2 GRIP1 PURB PAK2 PRR14L EP400 NPHP4 CMTR2 SMAD3 USP47 STIL NUP153 DNAJC13 DNMBP KIF18B MXD1 CAPRIN2 TAB3 ZCCHC2 MIDN DDX5 RASEF ICE1 ARHGEF28 ETS2 PPP1R9A CAMSAP2 PLB1 CAMSAP3 AMMECR1L SYDE2 ARHGAP21 POGZ COBLL1 SACS QSER1 PDZD8 ZFHX2 ARFGEF2 ARFGEF1 CBX5 FAM86B2 NAV2 ETV3 ETV6 VCAN ELF1 JMY AGAP6 PIKFYVE RASA2 ATP13A4 KDM5A LUC7L2 CHD9 USP34 CHD7 CHD6 TRPS1 MOSPD2 AGAP4 AFF4 PLD1 CHD2 NR2C2 CHD1 AFF1 DPP8 OTX1 CFAP44 ATF7IP KDM2A SPEN DAPK1 LMTK2 FAM168A TAF1 PALLD REST PEAK1 TBC1D8 NAA15 SPRY2 KRAS RERE PALM3 THBS1 TNKS2 NR3C1 CBL SENP7 MAPK8 DIP2B LRIG3 Mock v SARS-CoV-2 Calu3 GSE147507 down GAMT ENDOG HEXIM1 DNAAF3 WDR83OS PIH1D1 ZFYVE21 PASK HSPE1 HNRNPM SCD ARMC6 ASB9 MTHFD1 HSPA1A ORAI2 RHNO1 POLR3K ASF1B HSPA1B SF3B5 PGAP3 HPGD NCAPG NCAPH CLDN2 NTHL1 PSMD3 DPYSL3 CAPNS1 AP2S1 SAMD1 GTSE1 HES6 FDFT1 SNCA SIGMAR1 FZD1 ICMT CHST7 PLK1 TMA7 WDR54 TEX15 THAP11 AIF1L DHFR SQLE GJB1 TBL3 HOGA1 FASN SAPCD2 SFXN2 SIVA1 TSTA3 ANAPC15 CDCA2 CDCA3 POP5 NCAPG2 SDR39U1 ENO1 TMEM97 PRKDC VPS26B LRPAP1 MRPL11 MRPL12 MRPL20 GCSH NETO2 PRDX2 PDGFD KCNMB4 PROM2 SDF2L1 NUDC CENPV SNAPIN ANXA5 TESC EMP2 EMP3 IFT122 CDC6 TIMM21 LYZ WDR34 CENPF ADI1 CENPI PXMP2 CENPM CENPO CYB561 ANKS4B CDKN3 CENPT SLBP PIF1 RPN1 FAM149A HSPB11 ACAT2 LDHB MRPL41 PACSIN3 DLGAP5 WWOX CDKN2C AADAT ELOVL6 ZNF580 MANEAL DHRS1 ELP6 TUBB4B BDH1 NCAPD2 NCAPD3 TRMU TCF25 MPV17L TUBA1A CENPA TMEM141 SMPD4 RECQL4 TMEM147 NSDHL TUBA1B IMPA2 PSMB3 TCTN3 AIFM1 NEFL ANKRD54 METTL7A ANXA9 AGR2 METTL7B MDH1 FADS2 FBXW9 PPP1R16A F12 C1ORF122 HNRNPAB SAP30 COPS6 MAPKAPK3 RAB36 CSPG5 SNRNP25 DHCR7 NHP2 RNASEH2C GPS1 TUSC2 SRSF2 UCP2 KATNB1 HJURP HR CDH6 BCL2L12 RUVBL2 SPP1 PMPCA ACSS2 KPNA2 SLC39A4 C21ORF58 FANCI OSBPL7 PCYT2 IGFBP6 FAM229B CYS1 LRRC45 SLC9A3R1 FANCG ACLY LSM7 KIFC1 BIRC5 PGP TROAP PIN1 GMNN AK2 PHB IPO4 C1ORF53 FOXM1 TM7SF2 CHAF1A APMAP MPC2 AMDHD2 UROD THEM6 OIP5 EIF2B1 AP2M1 SAC3D1 CYB5B EIF5A RFC5 RFC2 DHCR24 NEB AHSA1 ESPL1 MCM4 MCM5 MCM6 DCTPP1 MCM7 TRIM54 KCNK2 MCM2 MCM3 SLC25A1 MIPEP NDUFB7 SHMT1 NDUFB2 PAGR1 PMVK ORC1 DSEL SPR PGK1 CCDC34 NDUFA8 MMAB CYP51A1 NDUFA4 SPAG5 PRC1 CTDSPL PKM LAGE3 SNRNP40 SYT12 ANAPC5 SLC25A10 PCOLCE2 EIF3B CTXN1 EPHB6 HDAC1 PRPS1 UHRF1 KIAA0100 TSPAN12 HSD17B10 WDR90 CDC45 MIEN1 PRADC1 POLR2E POLR2F HMG20B FBXO9 POLR2L CD320 TUB BRI3BP IMP3 TM4SF4 KRT8 JMJD8 CDC20 GCAT MALL KIF20A PFN1 CALM1 ATP6V0D1 PLEKHB1 CCNF CISD3 UQCR11 DPCD HS6ST1 LRP8 AQP1 TONSL NCLN SNRPD3 RAD54L E2F1 E2F2 CPNE1 STXBP6 RIBC2 COX8A MIF MANF COMMD4 ALG1 IL17RB TPX2 SDC1 CUTA LMAN2L MRPL3 C7ORF50 COMMD9 PTDSS1 TSPAN8 TSPAN6 ARL6IP4 TSPAN3 SKP2 AGFG2 DECR2 ZWINT NME1 VAV3 CLDN10 TPPP3 ID1 ID2 VWA1 CLPTM1L MPND SGK2 IGSF9 DTYMK MAOB CETN2 TOP2A PCSK9 KIF12 MEDAG ACACA ERI3 DGCR6L MLEC TNFAIP8L1 CTSH CCT3 ATP6V0E2 MME MCCC1 RANBP1 PARP1 UBE2E3 CACYBP VASH1 THOC3 RPA1 C9ORF116 PGRMC1 SPC24 NDUFAB1 TRIP13 TACC3 RAMP1 SPC25 FEN1 AHCY TOMM40 GBA FHOD1 DERL3 MKI67 CRIP2 COX5B NUBP2 SOSTDC1 GINS2 CA12 QPCTL SCARA3 UBE2C LIG1 GINS4 ALYREF ARHGEF39 RARRES2 RPGRIP1L SDHA TMX4 BUB1B KIF4A POLE4 PRR15L STEAP3 ALDH16A1 CAPS IVNS1ABP PCNA NDUFB11 CHRNA5 NDUFB10 AURKA IHH NRM PEBP1 HSD17B7 TYMS GALNT10 EFTUD2 CAPN8 TCTEX1D2 TMEM129 IGFLR1 MYH10 TRAPPC2L FDPS CASR KIF22 OST4 IDH2 DDX54 TBCD ARHGEF19 KIF23 SMAD6 CAMKMT KIF18B TMEM237 TRNP1 SRPRB THOP1 KIF2C FGFR4 MXD3 FGFR3 VIL1 PKDCC ISYNA1 ROGDI MYL6B SLC2A8 SCGN EBP CCNB1 HADH FAM81A BCKDHB HSPA8 LRWD1 TICRR HPDL EPN3 VCAN TMEM213 RABEP2 DNLZ NDUFS3 MNS1 IDI1 HMGB3 LMNB1 DBI DPP3 LMNB2 SYNGR1 TMEM201 UPK1B MFSD5 NPBWR1 MFSD3 GMPPB BCL7C FAM83D RBM14 TIMM8B RRM2 DCXR ANXA13 LSS ANXA10 PSRC1 CAT ALDH1A2 CHDH SLIRP VDAC3 MVD GALM TELO2 MVK RERG DDC THRA SLC22A18AS CLN6 CHCHD6 NT5DC2 POLD1 POLD2 CHCHD2 CRYM Mock v SARS-CoV-2 Calu3 GSE147507 up MX1 MX2 GTPBP2 PSMB9 SYTL3 L1CAM KIAA1217 MTHFD2 CYP1A1 IDO1 OPTN ATF3 ZNF274 SAMD9 SERPINE1 BACH1 BACH2 CH25H APOL6 IFNL1 IFNL3 IFNL2 TP53INP2 CYP1B1 GBP1 HES1 ST3GAL1 MUC4 GBP3 GBP2 GBP5 APOL4 EPSTI1 ZNF267 APOL3 GBP4 SDS BATF2 JAG1 KLF10 NR1D1 NR1D2 FOSL2 LATS2 FOSL1 PLSCR1 ATF4 BCL10 PDGFB GATA6 GATA3 SAMSN1 C3 RNF213 NUB1 ZC3H12A ZC3H12C NKX3-1 JUNB IER3 DUSP5 LYN PNPT1 JUN GSDMB DUSP1 CCL22 PHF11 CCL20 SEC16B NFATC2 SAMD4A DUSP8 SLC7A5 ITPKC MMP13 CYLD ZEB2 BHLHE40 BHLHE41 JDP2 SERPINA10 ZC3HAV1 KIAA0040 BBC3 TRIM5 C6ORF58 RIPK2 JARID2 SERPINB2 ZNF462 STAT1 SERPINB1 IFNGR2 STAT2 G0S2 F3 SERPINB9 SERPINB7 DAB2IP SPSB1 FOSB MAP1B NDUFA4L2 PELI1 ZNF217 HBEGF SRFBP1 CDKN1A PTAFR TMEM140 FSTL3 PTGS2 IFIH1 PSMB8 NAMPT C18ORF25 RIOK3 RICTOR KRTAP2-3 JAK2 ZSWIM4 ZBTB10 TAP1 TICAM1 PNRC1 CXCL10 CXCL11 PSAT1 TRAFD1 ADM2 AJUBA SLC25A37 PPP1R15B ALDH1L2 PHLDB2 CSF3 CSF2 CSF1 PPP1R15A TNF C6ORF132 FOXO3 ZBTB20 FOXO1 BCL2L14 FGD6 BCL2L11 ZFP36 RNF19B LAMP3 FLNB MAP3K8 SH2B3 MB21D2 SLC15A3 BTN2A2 FST TRAF1 TNFRSF10B NFKB1 NFKB2 FBXO32 RCAN1 MAFF MYD88 XAF1 SP140L BIRC3 MAP3K13 ANKRD33B CD274 NCF2 IRS2 CDC14A SAT1 C6ORF223 ABL2 PIM1 PIM3 C1QTNF1 SEMA7A DTX3L EIF2AK2 MACC1 KCNJ15 ASNS CFLAR BCL3 DSG3 SP8 TRIM56 NFE2L3 BCAR3 NFAT5 GMPR NLRC5 DUSP16 CYP3A5 C15ORF48 DUSP10 DENND3 DNAJB4 PHACTR4 RREB1 SKIL PLEKHG7 KLF4 KLF6 TXNIP TRIM38 SEMA3A C1R C1S ZBTB43 DDX60L PPM1K ITGAM HDAC9 TNFSF13B DHX58 CCL5 TRIM25 CCL2 FBXO6 TRIM21 TRIM22 SP110 LRRN3 RSAD2 PLEKHA4 TTC39B EREG PML LAP3 TMCC1 NEURL3 XRN1 CTH TRIM14 UHRF1BP1 SIK1 DCP1A IFITM2 LRP2 IFITM1 SP100 TRANK1 UBE2L6 HERC6 HERC5 NUAK2 RAB11FIP1 PARD6B IFI16 FLT3LG CHAC1 CCNL1 N4BP1 EGR1 APOBEC3D EGR2 RABGAP1L APOBEC3F XBP1 APOBEC3G TNFSF15 GADD45B SLC34A2 ARRDC3 GADD45A PLA2G4C ARRDC4 NUAK1 IFI44 HLA-F PARP14 CNKSR3 PARP12 PARP10 LST1 CREBRF IFI35 IFIT5 KLHDC7B IKZF3 IFIT2 WFDC5 IFIT1 ICAM1 IFIT3 MT2A SOX4 HELZ2 EPC1 HIVEP2 HIVEP1 SOX9 KIF21B TNFSF10 IL12A TP53BP2 LGALS9 RIMKLB SYNPO EDN1 EDN2 IL15 TSC22D2 BTN3A1 NCOA7 NMI LIF TUBE1 KIF6 VEGFA IL1A BST2 IL1B DEPDC7 CEACAM1 THEMIS2 KRT17 KBTBD2 CD22 TLR3 CSRNP1 CSRNP2 CITED2 SDC4 SECTM1 STC2 TMPRSS3 KRT23 NEDD9 ADRB2 TNFRSF11B CX3CL1 PTPRH DUOX1 DUOX2 UGCG GSE1 ANKRD1 PCK2 PARP8 PARP9 PDP1 B3GNT7 DLC1 PER1 B3GNT5 NEDD4 CMPK2 ERRFI1 AMIGO2 PTGER4 AKAP12 SERTAD2 RSRC2 HDX IFNB1 TBC1D22B FILIP1L RAB8B LMO2 ZBP1 TGFB2 LIFR VCAM1 IFI44L ZNFX1 ULBP1 AMOTL2 CD69 OTUD1 TFAP2A TYMP SAA4 SLFN5 GIMAP2 PRDM1 ZFP36L1 SLC1A4 SAMD9L RELB ZFP36L2 BAHCC1 DUOXA2 NLRP3 NLRP1 KRT6B SMAD3 DDX58 ARID5B INHBA TDRD7 ISG15 INHBE SMAD7 KMO SSH1 GEM NR4A3 ISG20 EFNA1 NR4A2 MXD1 FGF19 CREB5 ZCCHC2 ARHGEF28 PLAU PLAT ETS1 RASGRP3 ETS2 DAPP1 DDX60 RASGRP1 PDZD2 CALD1 UBD ZNF385C PMAIP1 BCL9L TIPARP NFKBIZ NAV2 SHROOM2 OAS1 NAV3 TNIP1 GPCPD1 CLK4 ETV7 NFKBIA CLK1 IRF1 IL6 BMP2 OAS2 OAS3 IRF2 IRF9 RBMS2 IRF6 IRF7 DEFB4A UBA7 MAST4 TNFAIP3 FUT1 CXCL2 TNFAIP2 CXCL1 FUT3 ADAR CXCL3 CHD2 IRAK2 RASGEF1B PDE4B BDKRB2 SCN3A CASP1 RBM11 KDM6A KDM6B IL15RA ZNF185 PLAUR SOD2 TIAM2 HSH2D ALDH1A3 LTB CXORF38 S100P RBM43 SPRY2 PTX3 B4GALT5 TRIB1 RTP4 LAMA2 TUFT1 THBS1 PPP2R2A RND3 USP18 NR3C1 OASL RND1 SAMHD1 DDO CYTH4 KYNU PTK2B NRCAM Mock v SARS-CoV-2 H1299 36h polyA GSE148729 down GAMT STARD4 POLR2J2 POLR2J3 TYW5 STARD9 LRRC37A2 AHNAK2 RC3H2 PASK RPL17-C18ORF32 NISCH SCD IFT88 TEP1 TMEM79 CDK10 HSPA1A DCHS2 ALG10B HSPA1B CHIC1 RB1 PRKAA2 PNKP ADARB1 SPG7 SLC5A3 CHST11 WLS MYH7B ZBTB7A PHC3 DMPK ZNF141 PLK3 VPS13D ABCA5 PBX4 VPS13B VPS13C VPS13A C12ORF56 MOV10 PHF20L1 FOXL2NB RNF207 VAMP1 HOXB4 SFXN5 HOXB3 HOXB6 CFD ZNF133 MAPKBP1 MT-ND4L ZNF490 TMEM182 ENO2 HACD4 FAM135A RNF213 ALKBH3 PCNX2 IER2 PCDHA5 MYBL1 IER3 SULT1A4 ANKIB1 ZNF121 LYPLA1 SHPRH CHKB RIPK4 CARD9 CARD8 DCBLD2 SULT1B1 KAT2B MMP17 MMP16 TTLL3 AGO2 AGO3 GTF2H2C RAPGEF6 ZNF112 WDR27 ZNF44 ZNF518B CSAD UGT8 TMEM169 HBQ1 TCP11L2 ZNF469 DLGAP4 ZNF467 CTBS PCMTD1 PCMTD2 ZNF221 FAM71E1 ABHD14A-ACY1 SLF2 ELMOD1 STAT2 MAMDC4 SLC2A13 ELOVL7 TMEM154 ADAT3 RNF125 MIPOL1 CLIP4 CLIP3 SNX18 JMJD7-PLA2G4B TAOK3 ETNK1 TAOK1 ZNF334 SRPX PHF6 LRRC14 SMG1 CDKN1A MPV17L LPCAT1 GRAMD4 RHD LYST NDST2 RECQL4 ZSCAN30 EFCAB3 ZNF329 GPAT3 CSMD2 SLC17A5 PHLDA1 PPAN-P2RY11 SEC24B IPMK PNRC1 NRBP2 FBXO10 SLC25A39 OBSCN SLC9A7 MSH5 DMTF1 CNOT4 TUBGCP6 ZYX ANKRD36C GOLGA8B SLC25A37 GOLGA8A DGKH ZNF793 DGKD NPAS2 GGA1 ZBTB20 ZFP36 POTEI PTAR1 TUBB3 POTEF NKTR SH2B3 ZNF300 PNISR SLC38A2 TRAPPC2 CCDC14 RNF170 KCNAB1 FOXN2 ARL17A RNF169 SYNJ2 KIFC2 MOB4 BIRC6 PCYOX1 INO80D IRS1 KMT2D RIF1 KMT2C KRBA2 AK7 FGF5 CCDC144A NHSL1 ATXN3L RAB43 B3GALT1 ABL2 PLXNA3 ZNF527 PLXNA1 ZNF525 EIF3CL PCDHAC2 ZKSCAN1 PRRT1 SLC2A4RG ITGA3 ARL2-SNX15 FAM219B TNFRSF1A ARL4C CDK6 DNAJC6 ZNF638 NF1 EFHC1 OGT ITGA7 TNFRSF25 SFT2D2 CPM SFT2D1 NFAT5 LRGUK SRCAP TNKS CBWD3 CSAG2 NPAT FSD1L UNC80 MROH6 CEP295 ZNF623 B4GALNT1 SKIL CEP290 RALGDS MDN1 C8ORF88 MCL1 PLEKHG4 PLEKHG5 SLC36A4 CPT1B CCDC57 DST ATRX ZBTB33 KIAA1549L SPDYE6 SORL1 RAD52 KLF6 SYT11 NPIPB3 PABPC1L CD226 CTXN1 EIF4A2 GPR89B SYCP2 UHRF2 SEMA3C WDR87 LENG8 ZGLP1 TTN SYNE2 HECTD2 P2RX5-TAX1BP3 HECTD4 NHS DCAF10 NPIPA1 UGGT2 SRRM5 ENTPD4 NBEAL1 MAPK8IP3 SMARCA4 MAPK13 RUNX2 MAPK12 ZNF718 TMCC3 UBAP1L STXBP1 STXBP4 SATB1 LRP1 CPNE7 AKAP9 CHORDC1 APBB2 CCNL2 CCNL1 RFFL SRGAP2B WWTR1 ARRDC3 ALG6 INTS3 SUCO PARP14 RPS27 CDCP1 FBXL4 RGL2 LCORL TNFRSF6B MACF1 TP53TG3F SPATC1L ICAM5 PPL PCDH18 GOLGA4 NEDD8-MDP1 MICAL1 SOX9 KCNN4 RIMKLB TRPM7 BANP NCOA2 GABBR1 NBPF11 LIF KLHL3 NBPF12 CTTNBP2NL ID1 CLDN15 VWA1 ATM ALDOC ZNF780B PTPRS SLC44A5 STC1 BRCA1 PCSK7 PCSK5 SBNO2 PPP3CB MAGT1 ZMYM6 ST8SIA5 RCE1 SOCS6 ZNF585B RANBP2 LMLN PCDHB11 MLH3 NR6A1 SGSM2 TTC6 AL354822.1 B3GNT4 TRIP11 F2RL1 LY6G5B VMP1 ERRFI1 TRAF3IP2 FKBP15 GREB1L PRICKLE4 ZDHHC8 MRPS30 PCLO AKAP11 MNT TBC1D32 OPHN1 FAM3C GABRE ICOSLG REV3L MAP4K5 MORC4 PRAF2 GOLGA6L4 ZFC3H1 LIG4 MAGED4B ATAD3C ARHGAP32 MZF1 POC1B-GALNT4 BRWD3 PDE7A ZFP36L1 PURB PRSS53 GNPTAB TMEM249 NPHP3 KNTC1 MORC3 PDE8A SMAD3 TTC37 SLC30A7 PSAPL1 MANBA TTC31 SPDYE16 LIME1 UPK3B SSH1 KIF27 NR4A2 PAN2 PREPL MXD1 CAPRIN2 ZCCHC4 DOCK5 RASEF CACNA1A SPPL2A PLAU LPP LTBP4 HELB EME2 PRR5-ARHGAP8 GAGE2E CAMTA2 SACS ANKZF1 EGFL8 PCDHGA6 TTC14 CRYGS HMGA2 LAMB2 PILRB DNM1 TAPBP DDX19A CLCN6 RBL2 LPIN1 HOOK3 BMP1 DNASE1 IRF9 PAXBP1 DNAH8 UBA6 MAST3 USP34 RPAP1 RTEL1 HAPLN3 SPECC1L-ADORA2A ZNF670-ZNF695 LRP5L MKNK2 MAN2C1 TMEM189-UBE2V1 PDLIM5 RHBDF2 RWDD4 LCA5 THAP1 ATP2B1 DLK2 JSRP1 TIAM2 FMNL2 VGF RSPH9 PIK3IP1 SPRY4 DENND6B RBM41 HCN3 SNTB2 B4GALT6 OTUB2 ZNF177 PKD1 LAMA5 C2ORF68 TNKS2 SLC4A7 RBM5 RPS6KA3 EPS8L2 ZNF169 Mock v SARS-CoV-2 H1299 36h polyA GSE148729 up ISY1-RAB43 PIH1D1 CADM1 CKMT1A AARSD1 GTPBP6 MED8 NUP93 DDX39A PSMC5 PSMC3 CIAPIN1 HNRNPD DUS3L POLR3K RABL6 GPATCH4 ARPC4-TTLL3 DCAF8 RNF4 PARL PSMD9 DCAF4 PSMD7 CHST12 MSANTD3 PSMD4 PSMD2 CHST14 VPS18 HES6 BATF3 SAP30BP ZNF263 BLOC1S5-TXNDC5 TFIP11 SLC6A6 VANGL1 EIF5 TBL2 COMMD3-BMI1 HYOU1 FARSB ATF5 CEP68 GMFB TSTA3 RRP8 GABARAP PHB2 CDCA2 TFRC CDCA5 ENO1 WDR46 FARS2 LRPAP1 CIAO1 SCPEP1 GPR176 PLAC8 PRDX5 C19ORF33 ADNP2 MCMBP CEP72 TIMM17B MYBL2 SULT1A3 ANXA1 CENPW TRMT10C TPI1 FUCA2 KIAA1143 NFATC2 GNL1 TIMM22 TMCO4 ECSIT CENPH RAPGEF3 CENPN PHF14 CENPP MOCS1 CDKN3 HOXD8 HRK ARF3 SLC18B1 FLII PEA15 C12ORF43 ECHS1 SKA2 HSPE1-MOB4 LDHB MRPL41 CSRP1 ATG101 TTPA TK1 ZNF468 DLGAP5 CDKN2C ZNF582 STAT1 GSTO1 ACOT11 ANKHD1-EIF4EBP3 CNPY2 GTF2H2 POU5F1 SERPINB7 PSMA6 GCFC2 FABP5 EBNA1BP2 PLEKHO1 ZNF695 SMG5 TRMU PFAS ZNF330 CTDP1 NDUFA12 TGFB1I1 TMEM140 MIEF1 CENPA CHKB-CPT1B KRI1 TUBA1C TUBA1B AIFM2 RNASEK-C17ORF49 CHN1 GPAT2 BRD9 NEFH C11ORF45 TMEM14B UVRAG PPIL1 C3ORF80 FKBPL F12 CDC25A ZBTB10 ILF2 HNRNPAB AAGAB AJUBA SNRPB MAD2L1 HDDC3 ODC1 URM1 HMGN5 TUBB6 NACC1 LAMP1 RUVBL2 SLC39A7 RPS3 ZNF787 HMGN4 PLEKHJ1 NOP14 NOP16 BTN2A2 GTF3A TVP23C FTSJ3 PGD FANCE NDC80 GGCT METTL23 NT5C3A KIFC3 NCL BIRC5 SMS MAP3K14 MAD1L1 ZNF410 ZNF773 C11ORF98 PHB LARP1B KRCC1 PCDHAC1 STK11 APMAP HNRNPDL EFHD2 TXNDC9 MGME1 COA4 CYB5B FUS GPX2 PEG3 TXNRD3 PA2G4 WRAP53 TMBIM1 DNAJC1 ITGAE ADORA2A ECHDC1 CCDC43 DCTPP1 MCM7 SAR1A SLC25A3 SHMT2 SHMT1 CBWD5 NRF1 UAP1 SPR CCDC85B CTNNBL1 COA6 EIF3A OXR1 NDUFA4 ADRM1 SPAG5 RANGAP1 TPD52L1 TSPAN17 CFDP1 MYO1C HAND2 SMIM20 ALDH9A1 EIF3B NOP56 TSSC4 ARHGAP11A GPR89A HSP90AB1 ADPGK ITGB5 UHRF1 TNFSF13B PPM1G SART1 NGRN MIEN1 GM2A FIP1L1 PUF60 SPDYE2 TRIM26 BAK1 PCBD2 AAMP NPIPA8 HNRNPA0 PGM1 SSB CNBP P3H2 ASRGL1 CDC20 GCAT AFG3L2 CCDC86 TFAM EPAS1 STX18 TTLL11 PPP1R35 LRP4 MRM2 MAGOH DHX30 UXT HERC3 RACGAP1 DHX37 MTHFD1L ARFIP2 MAGEA1 AAR2 COX8A ABT1 SLC6A17 XRCC6 XRCC3 TOP3A HLA-A HLA-E RPL39L AIMP2 RPS26 TPX2 NCEH1 RPS29 KLHDC8B TTLL12 EZR FBXL5 PAF1 TP53TG3C LTV1 ANP32B FAM89B PITPNB NAGPA TXNDC17 MRPL4 PTDSS1 TSPAN9 SNRNP70 GLUL ZNF800 ARGLU1 RTEL1-TNFRSF6B CDT1 SLC10A3 TUBB AGTRAP NBPF10 GAB3 MRPS7 NME2 BST1 CLDN10 NAT10 RHOJ CLPTM1L TAX1BP3 UMPS EEF1E1 CCDC103 CD99L2 ACTR1A RCC1L AATF FXR2 C1QBP HTATIP2 SMYD2 QSOX1 SMYD5 KIF1C PHGDH PCK2 UTP14A NPM1 BCAP31 PRMT3 MRPS21 MRPS22 ORMDL2 GFRA1 ZDHHC18 PGRMC1 APRT TJP2 RAB9A TACC3 FEN1 GAGE12F TOMM40 GAGE12G GAGE12E SLC43A1 MRPS33 MCF2L2 SAMM50 NANS TBC1D30 MTX1 LCMT2 GINS2 TUFM GINS4 CCDC159 UQCC2 AC244489.1 CRLS1 PCDHA12 DOK1 XK ILVBL DKC1 POLE3 SSU72 GPRIN1 KIF4A DPEP3 PPIF CHMP4B COX20 PPIE ABCG2 MRFAP1 PEBP1 SLC1A5 YARS2 PHRF1 NOL6 TOMM22 FBL TMEM242 KHSRP TWISTNB NT5C PES1 ABCF3 RPP14 BORCS6 DDX54 ARHGEF19 EIF2S2 CREB3 RNF103-CHMP3 TMEM117 MKRN2 SRPRB THOP1 KIF2C GNAZ ZCCHC3 VCP PODXL2 ETS1 EEF1B2 SYDE1 CALHM2 NME1-NME2 ZMAT2 CALD1 GAGE2A AC012314.3 AC012314.4 ACAA1 AC012314.5 AC012314.6 HSPA9 VDR SLC52A2 PEX2 MAGEA2B ELF1 ACOX3 RCN1 CYCS NDUFS2 PRTFDC1 PSMD11 PSMD13 B4GALT1 NAA20 RHOXF2 DDX47 PINX1 TNFAIP3 CKS1B C4ORF36 SLC3A2 HMGB2 RPF1 EMG1 PDLIM1 CNPPD1 DNPEP CCDC181 TIMM8A RRM2 CDK11B CLEC11A TAF11 XAGE1B TBC1D1 RBM42 FAM50A PTX3 TELO2 RANGRF PRR5 RERG POLDIP2 CD163L1 DDX21 POLD4 RPS6KA4 RBM3 RPS6KA1 CHSY3 PSTK GUSB CLVS2 Mock v SARS-CoV-2 H1299 4h polyA GSE148729 down ISY1-RAB43 NUP214 WDR75 DICER1 CD3EAP SOX12 NUP210 LRRC37A GRIN2D ZFYVE26 GTPBP2 EML3 NISCH CYP2C8 WDR83 CDK10 HSPA1A MPPE1 FAR2 HSPA1B ZNF276 MT-ND5 ASAH2 MT-ND6 ZNF274 MT-CO1 MT-CO2 ADARB1 WDR62 LCAT SPG7 MT-ND3 MT-ND4 SDAD1 MT-ND1 ADCY7 MT-ND2 SLC5A6 NXF2 FAM156A C19ORF54 ZMIZ2 CYP1B1 NXNL2 KLF11 ABCA3 JAG2 DMPK FZD7 PRRC2A MSH5-SAPCD1 HCFC1 GIGYF1 PTP4A3 HSPG2 FASN CCDC169-SOHLH2 ATG2A HOXB3 CTAGE8 MT-CO3 HBP1 VAMP3 CDCA3 MT-ND4L MUS81 PRKDC F11R PLA2G7 MYSM1 TMEM94 CHTF18 LARP1 RNF213 FAM110A FAM122B FASTK NAPRT CEP76 ZNF367 CDK5RAP3 CHKB NFATC4 IFT122 C6ORF62 TMEM175 ABCC10 TMCO6 CENPI AGO1 UBAP2 CDKN3 CENPT WDR27 BTG1 YJEFN3 GPT IQGAP3 WDR24 MED12 ATXN2 RHPN1 CTBS ABHD14A-ACY1 MBNL2 ZNF341 MBD6 ELMOD1 MTRNR2L12 STAT2 DGAT1 MAMDC4 WDR19 BIVM-ERCC5 CIT NUDT22 BDH2 JMJD7-PLA2G4B HYLS1 NCAPD2 SLC29A1 SETD5 SETD6 PFAS LRRC14 ZNF692 SMG1 PIGO RECQL4 WRN RNASEK-C17ORF49 ADAMTSL4 GPAT2 MAP3K3 RNF44 TLE3 PPAN-P2RY11 SEC24C LAG3 S100A2 IPMK NRBP2 GOLGA8R CDC25B DISP2 ATXN2L TUBGCP6 PKP4 CNTROB UTRN GOLGA8B ZNF674 GOLGA8A FAM117A ATN1 GGA3 CYSLTR1 UBN2 SLC26A11 C11ORF68 NDOR1 LDLR NKTR SLC38A2 OSBPL7 ATP8B3 ODF2 OSBPL3 FOXN3 PIAS3 DGKQ ZNF418 TROAP TDRD12 SLC27A3 RAD9A SLC26A1 NOTCH2 TEN1-CDK3 CALCOCO1 KMT2B FAM13B THADA ARHGAP4 ATXN3L SESN2 PAPOLG PLXNA1 SLC38A9 TRIM66 MEN1 ZNF880 PEG3 MSL2 CDK6 ESPL1 CCDC74B OGT DCTPP1 TNFRSF25 NEMP1 MT-CYB SLC26A6 L3MBTL2 CNTNAP1 POMT2 ITPR2 CBWD3 MLLT1 APH1B MROH1 P2RY8 PLTP RHOT2 VPS52 MROH6 DENND3 DNAJB9 AMH D2HGDH TNPO2 METTL17 NADK MDN1 BCAS3 PLEKHG4 PLEKHG5 NCKAP5L CPT1B DST HAUS5 TMEM256-PLSCR3 KIAA1549L MYO19 RBM14-RBM4 ASPM KLF9 RAD52 SH3D21 QTRT1 TLL2 PABPC1L SLC25A10 EIF4A2 GPR89B UHRF2 TCIRG1 LENG8 ZBTB45 WDR90 SYNGAP1 AP1G2 SIN3A IGF2BP1 VPS36 NPIPA2 NPIPA7 NPIPA5 ENTPD4 NBEAL2 PNMA3 P3H1 MFSD10 DCLK2 CDC20 SRRM2 NEURL4 SPATA13 ULK3 RIN1 TECPR1 AKAP1 SMARCAL1 SLC23A2 CPNE7 AKAP9 LRP5 ANTXR2 CCDC102B TONSL CHORDC1 DHX35 OGFOD2 RAD54L E2F2 FSD1 FSD2 CCNL2 CCNL1 SLC12A9 BRICD5 SRGAP2B STK11IP INTS3 ALG3 PUM1 INPP4A STAG3 FBXL6 PLPP2 FBXL8 TP53TG3C CUTA MACF1 PIEZO1 LRR1 IQCJ-SCHIP1 PRRC1 INPP5E MBTD1 MICAL1 RASSF7 TREX1 CTSA AASS NBPF6 RTEL1-TNFRSF6B GABBR1 OTUD6B AMPD2 TYK2 KIF7 PABPC4 PABPC1 FAM193B SFI1 ARHGEF1 SUV39H1 ACACA SMIM11A SBNO2 ACTR1B STK36 NKIRAS1 SH3PXD2B DPH2 STK38 CD37 LMLN MAP4K1 GAA ZDHHC14 ZDHHC18 NLE1 SGSM2 HNRNPH1 FAM189A1 SGSM3 KCNQ5 LLGL1 LY6G5B DYNC1H1 ENGASE ROBO3 MTRNR2L1 HEATR1 MTRNR2L6 GDPD3 ADIRF MTRNR2L8 MTRNR2L4 FCGBP PCLO MT-ATP6 ALS2CL MNT DZANK1 ANKRD13B ATG9A SLX4IP SZT2 CPSF1 WNT5B SHISA5 ARHGAP29 HUWE1 PCDHA12 ATAD3B PUS7 TMEM131 SGO2 ARHGAP33 DOK3 TMEM259 ATG16L2 FANCD2 TBC1D25 SPNS1 STEAP2 IVNS1ABP KLB ATF6B ATP1A3 TMEM240 CELSR3 NOL6 AMOT TEPSIN PRSS53 TAF1C EMC1 TAF1D HCFC1R1 MYH14 HSF4 MYH15 NLRP1 KNTC1 MORC2 NDUFV1 USP49 PCID2 DDX56 ARHGEF17 MSANTD3-TMEFF1 TDRD9 ARHGEF19 DDX51 PAN2 PRPF8 KIF18B GEMIN8 SKIV2L CCDC130 DOCK5 PXK USP54 KLHL17 SPPL2B KLHL12 PLAT LTBP4 RGS5 EME2 ADGRG6 CDH24 ACAA1 VARS2 TIPARP CBX7 EGFL8 USP21 ATP13A1 HSPA8 PCDHGA3 AKTIP IRF2BP2 SLC52A2 LAMB2 PILRB NAV3 TICRR GPCPD1 CLK1 MYH3 LPIN1 AGAP6 PIKFYVE COL7A1 R3HDM2 FAM72C FAM72B LTB4R ZNF195 CGB8 ABCB6 DTX3 RTEL1 GHR DPP7 ADGRE5 MAN2C1 PIDD1 MUTYH GCN1 CDK11A CAD DDX10 DDX11 LSS WEE1 GNB1L ERCC6 PKD1 ABCD4 ACADVL USP10 SPATA20 YBX2 THBS3 USP19 CLCN2 SLC4A7 AC136616.1 CBS PCED1A CNR1 POLD3 POLG CYTH2 Mock v SARS-CoV-2 H1299 4h polyA GSE148729 up POLR2J2 HEXIM1 PCGF5 SYTL2 IFT81 C12ORF73 DKK1 EML1 PCDHGA10 HNRNPM MYL6 MEX3B SPINT2 TBPL1 RPL26 ORAI2 PSMC1 POP1 GTF2IRD1 CDK13 ASB6 GAGE1 JRK SAMD9 RPL11 SGMS2 LIN9 SERPINE1 RPL12 SZRD1 ASAH1 PSMD9 LSM11 KIAA1328 SAMD15 LSM12 ZSCAN12 MYC PXDC1 SF3B2 ARL14EP NDFIP1 FZD4 PHC2 F8A3 PLK2 VPS37B ABCA9 HDHD3 ELL2 COQ10B EHD1 FOSL2 LATS2 MLLT11 GJB2 UCK1 CTAGE4 PPT1 DZIP1 PKIG ATF5 RPL5 CDC42SE1 GABARAP RPL31 RPL30 ZNF493 SCHIP1 UXS1 RPL34 PDGFC BAZ2B ZNF25 RPL7 ELK3 RPL8 FAM122C MRPL21 SCPEP1 HMOX1 HOXC6 IER2 HMOX2 RPL38 JUNB MYBL2 IER3 HOXC8 DUSP5 GSTM4 GSTM3 JUN DUSP1 RIPK4 PDHA1 PHF11 ANXA6 ZNF32 WNT9A TUBB2A JOSD1 GNL2 TMEFF1 TADA2B AFTPH GPRC5B LYRM4 PXMP2 CENPN PET117 DENND1B ABHD2 PEA15 CLTB ZNF518B CLTA ADO ACAT2 PANX1 MED10 ZNF229 ZNF347 ZNF346 MEF2B WWOX P2RY11 G0S2 KTN1 GTF2H1 FAM200B PSMA5 ANGPTL4 PELI1 HBEGF TMEM229B EEF1AKMT1 ZNF570 GCNT2 STON1 MIEF1 PSMB7 TP53TG3 CHN1 TMEM38B PAIP2 GSN GOLGA8T FBXW7 TPM4 TPM3 ANKRD23 TPM2 MAP1LC3B2 DONSON GTF2F1 SLC9A4 SNRPA YEATS4 RAB35 FKBP8 SRSF4 SNRNP27 SQSTM1 AJUBA SNRPC DGKG TMF1 ROCK2 ZBTB20 NDUFC2-KCTD14 GBX2 POTEE IK MAP2K3 FAM217B TRAF1 ABHD18 RCAN1 MAFF FRMD6 NACA NCL ARPC2 CDC42EP2 GPR107 MAP3K14 BIRC3 INO80C CD274 C11ORF98 NAB2 CREM FBXO22 MYOM3 RAB43 GLIPR1 BTBD1 PMEPA1 TMSB10 TXNDC9 ZNF641 RFC3 GPX4 SMARCE1 PA2G4 CFLAR OSGIN1 FAM207A SMC1B KBTBD11 DBNDD2 CDK7 SNPH CDK3 PSMG2 SERINC1 C8ORF76 KCNK3 METAP2 NSRP1 BCAR3 NDUFB8 BICD1 MTM1 PTBP1 FGGY MDK RRP7A FUNDC2 RDH16 SNAP29 CTNNBL1 SLC36A4 EXOG KLF4 PKM SLC25A17 C1D CDC37 RAB13 TRIM38 CSNK1G1 ZNF852 TPT1 ISY1 GPR89A SRXN1 WDR1 ITGB6 CCDC47 FURIN FHL2 SEMA3C WDR87 PTEN LENG9 ITGAM BARX2 EXO1 SUMO2 SUMO1 BEND4 LRRC8E TRIM26 TLK1 C3ORF33 POLR2J TRIM22 NOMO3 SSB SCAF11 DDIAS CNBP ENTPD7 PARS2 C22ORF39 SLC46A1 HS6ST1 SFRP1 STX11 NUAK2 C1GALT1C1 HERC3 RBM15B NNAT SRGAP2C RFFL EGR1 SLC6A17 GINM1 SURF6 GADD45A TALDO1 XRCC2 NUAK1 VASP RPS26 GOLGA6L22 NET1 TAGLN2 NDUFAF2 RPS20 TP53TG3E IFI35 TMTC3 SOGA3 TMTC1 IFIT1 IFIT3 RINL RPS18 RPS17 TSPAN9 RASSF5 RPS12 SEC62 ATP6V1C2 KBTBD11-OT1 FOXD1 LIF AP3B2 LHFPL4 NBPF12 ZHX1 SYN3 CTTNBP2NL PTPRE LAT2 FRG1 AKR1B15 SLU7 RAB7A AVPI1 RAB5C RRAD CCDC106 CETN2 ZFAND2A SDC4 STC1 OTUD7B NMD3 HNF4G PCSK5 SMIM11B SOCS2 MAP1LC3B DND1 UIMC1 TFE3 KIF1B LMCD1 CAP1 NPM1 PRMT9 SPRYD4 C17ORF49 NUBPL PNPLA8 MRPS21 THOC3 RANBP6 LIMA1 FKBP1B CCNE2 NEDD4 F2RL1 IL17D VMP1 ERRFI1 GAGE12F GAGE12G AMIGO2 PTN TUBD1 MALSU1 PTMS TBC1D3I AKAP12 ENC1 SERTAD1 TLDC2 PUS3 ALYREF CBSL GOLGA6L4 PDAP1 WBP11 ATP1B1 SHISA8 TMEM135 GFI1B CKLF-CMTM1 LIN28B ARHGAP31 FAU SBDS AMOTL2 SCG2 RAF1 UBE2N LRP12 RPL26L1 GALNT13 NDRG4 PRDM1 SCNN1A ZFP36L1 CAAP1 RELB MSX1 DENND5B TRAPPC2L SMAD5 ZC3H13 SPDYE16 EPHX2 DNAJC14 POU3F2 SMAD7 DDX50 GEM NXF2B ZCCHC2 UTP23 COPB2 POGK ACTG1 SEL1L3 NR4A1 PTGES3L-AARSD1 C20ORF144 CNN3 AKR7A3 CHMP1B LRRFIP2 IL6R VDR ZFHX3 TTC14 MMP1 RBM19 CBX1 DTNBP1 HMGA1 SSTR2 PJA1 TCTE3 SAFB PJA2 NFKBIB NFKBIA IL7 ASAH2B BMP2 PCDHGB1 NDUFS3 CMTM3 RBM24 NFKBIE LUC7L2 SMIM4 IDI1 PSMD13 MCTP1 DDX3X B4GALT1 GAGE13 DDX43 DTX2 CXCL2 TNFAIP2 C2ORF49 DBI PHTF1 FAM83F BCL7B CASP3 WNT3 CXADR XAGE1A KLHL42 SPATA2L SOD1 JSRP1 THAP7 GOLPH3 FAM167A MASP2 MATR3 DDX28 PCDHGB4 YBX1 OASL SOBP ADD1 IFT52 TDG MAPK6 Mock v SARS-CoV-2 Lung GSE150847 down TBCA NAALADL1 SIS MAP1LC3A RPL36 ENPP3 MYO1A MYO15B VIL1 PF4 ETV1 FRMPD4 ERG TUBA1A CLEC2H CLCA4B APOA4 DMBT1 RDX CHP2 CYB5R3 F2 CRYBB3 ALDOB KRT20 CXCL2 TLN2 MUC13 FCGBP CDHR2 SPTBN1 NAP1L1 GLO1 CREBL2 TLCD1 DDAH2 RPS17 RPL37A TSHZ2 NT5DC2 LMNTD1 UQCR10 REPS2 RAB40B CGNL1 MT-RNR1 RPS15A PPL HIST2H2AC RHOBTB3 PNRC1 MT-RNR2 SLC25A4 ADH7 PTGFR WDR38 NDRG2 FMO2 RPL31 SLCO2B1 ALOX5 VASH1 SLITRK4 CCNB2 ME1 JPH4 CCNB1 TTK PAPSS1 SLC22A16 KCNMA1 GSTM2 GSTM1 G0S2 CAMK2N1 CDHR1 ABCC9 DSCAM CKS1B TRAK2 COL17A1 TFAP2A EVPL RHOD PYGO1 BNC2 FGF7 EDNRB DLX2 FGF1 STMN2 FOXL1 DACT1 GABARAPL1 CNGB1 PAX6 GLIS1 IQGAP3 HIST1H3D CX3CR1 B3GALT5 KCNA6 DPF1 NTRK2 GRIA1 STON1 HMGCS2 CPNE5 JPH3 LYPD8 GDF10 PCOLCE2 NETO1 LRAT INMT ACTC1 RNF7 CRYAB BAG1 FMO1 PEBP1 TPPP3 HPGD RPS23 RPLP0 CYB5A CRIP1 DCN EEF1B2 RPS21 DPT TAGLN PRX PPP1R14A GSTA3 EID1 SH3PXD2A KIF26B GLRX5 IGFBP5 CNTN1 OIT3 DLK1 COL9A2 NTRK3 CDK5R2 SCARA5 ALX4 GC ATP4A PRR16 PCDHA9 TET1 HMGN5 PPFIA3 ANO7 CRYZ LSM2 MGLL HTATSF1 NEK7 HIST1H3G KHDRBS3 CNN1 MAP1B MYH7B PRRX2 CLEC3B STRA8 ATP10B WT1 CCDC105 GCAT CDC42BPG MEDAG LBX1 CDKN2C GRIK4 CLGN TMEM126B BPIFB4 MROH2A DUSP9 GABRA3 TMEFF2 ABAT FAM149A SCOC TRANK1 MYL9 RPL36A SKIDA1 ADAMTS5 IGIP GAS1 SMOC2 INSM2 RCAN2 UNC80 DPYSL3 ACTG2 SCRT2 KLK6 MMP24 ABCA12 TMEM72 PYGM POU4F2 PCDHA8 TGFB3 COL25A1 MASP1 GTF2H5 THAP12 SIM2 FAIM2 NEDD4 LARS2 GSTK1 NXNL2 COX6B2 EPHA10 AHNAK KRT9 HOXC8 SLC12A8 SMIM13 KCNC4 PINK1 PCDHA11 PCDHAC1 SYNM MPC1 NECAB2 PPP1R14B KCTD10 ABLIM3 TTL TRIM9 APOB GAS7 NPAS2 MAGI2 WWTR1 STRC LIN7C PCDH15 DCLK1 AMOT PTP4A3 YAF2 NDUFA4L2 APOA1 KCNK10 FMO5 ACSM5 CYGB RGS6 ALDH1A2 SOX4 NDN RPS4X CAVIN2 HIST2H2AA2 RPL10-PS3 DBNDD2 IMP3 DUT CSPG5 LGALSL MTSS1L PARD6G KLHL13 PPP1R3C VGLL3 NTN4 BICC1 PHACTR2 ALOXE3 PALLD SSPN RTL8B KSR2 APBB1 KIF1C OXCT1 RELN AKR1C14 HIST1H3F ADH1 CCL21A HIST1H2AF RASSF8 DPYSL5 SHC4 SEMA6C OSR1 VWA5B2 PGM5 RBP1 MT-TV MTURN CLYBL NHLRC2 MT-TL2 FAM213B MT-TI GM15772 BMYC GPR27 PKIA SH3GL3 GNG7 FAM171A2 CDKL2 SPEF1 WASF3 SEZ6L DPP10 TMOD2 SHC2 ABCG4 GM27021 VMN2R24 PRSS56 GM10720 VMN1R203 GM26461 RPL35A-PS3 MEI1 OLFR1116 GM47295 GM43166 GM24187 JCAD 5033428I22RIK GM10260 GM19165 CRHR1 GM29237 AW551984 GAP43 GM48529 GM13425 GM26861 1810012K08RIK GM37151 SLC12A5 SAMD4 GM44669 RN7S6 9530053A07RIK HIST1H2BR SNORD100 AW822073 GM7298 GM44350 GM11168 MT-TQ CYB5D1 GPC6 GM33432 GID4 RN7S2 GM47299 ANO4 GM21149 GM12735 CHD5 ARHGAP20 PCDHA1 AAED1 OLFR1382 GM45102 GM49450 AY702103 GM26883 DEFA23 CD209F 5430419D17RIK TMEM59L COL6A5 GM28439 OLFR1418 GM34354 KCNA2 BHLHE23 AI593442 GM47305 LVRN GM29100 REG3B ACSL6 ITGBL1 GM21541 GM48008 RGS7BP GM10561 GM47287 OLFR648 GM10076 SPRR2A1 USP29 OLFR763 HTRA3 PNMAL2 GM11400 OLFR427 PCDHA5 SERF1 GM10282 VMN1R85 A930004D18RIK GM47311 C130074G19RIK MROH5 RPL15-PS3 HOXA11OS GM7611 RN7S1 KLF14 LHX3 A230005M16RIK ARX DEFA20 GM26714 SPRR2A2 DEFA24 GM49372 FBXO41 KLHL1 DEFA17 GM9573 BC029722 PCDHA3 ACSS3 SLC17A7 BEND6 EPM2A VMN1R68 DISP3 MYO1H A530084C06RIK CLIP3 DEFA21 1700020I14RIK CYP2C52-PS GM9866 PCDHAC2 GM29895 GM45633 GM7849 ZFP982 ZFP651 CHRM1 RPS2-PS10 GM49794 2810032G03RIK HOXD1 GM26619 PABPC1L2B-PS OLFR1351 FOXN4 GM20659 9330102E08RIK S100A1 SLC6A21 DUSP3 GM47304 GM12191 GRM2 UBE2QL1 XKR7 USP46 HOXA11 1700084F23RIK SULT5A1 GM49089 RPRML SIM1 SNORD35B SPTBN4 RNCR4 ALDH3B3 GM6999 D430041D05RIK DEFA36 LHFPL5 TCTEX1D1 NPCD GM41409 GM13093 KCNS1 DLGAP3 GM17535 GM26793 TCHH GM26735 RFTN2 GPR45 Mock v SARS-CoV-2 Lung GSE150847 up GLA SYVN1 CCL2 ATP6AP1 ZC3H7A DDX58 CXCL10 ESRRA ZZEF1 ATF6 PVR COL4A1 DLEU2 IFNG SERPINE1 FN1 B2M MYCBP2 TMEM173 MOV10 STOM ISG15 CD4 MX1 4932438A13RIK ITGA2 TNFSF10 MCTP2 CD180 TET2 MALAT1 ISG20 PLA2G7 ATP10A TMEM184B ARID5A PDIA6 ADCY7 PARP10 LGALS3BP THBS1 SLC3A2 TOR3A LRP10 TGFBI SH3BP2 BST2 ITGA5 GRN SYNGR2 NCSTN P2RX4 SDC4 C3AR1 TMEM106A IFI44 MSR1 GPNMB SCIMP C2 BATF2 CERS6 CCR9 B4GALT5 NOTCH1 MPEG1 AGRN SLC7A5 EPPK1 LAMA5 SLC7A1 DDHD1 ABCA7 NOTCH2 HELZ2 PLXNB2 SBNO2 PTPN22 RSAD2 OAS3 CD69 IDO1 IL10RA IRF7 CFB RGS1 ATP8B4 ZBP1 APOD SLAMF7 NLRC5 IL18BP GBP5 TAP1 PLD4 NCAPD2 SLC29A3 GZMA IFIT1 ITGB7 CCR5 PTPRC LAG3 IFIT3 TLR7 SLC7A8 OAS2 CD86 SIGLEC1 XAF1 CH25H CD274 DHX58 GPR141 IL1RN USP18 CMPK2 IFIT2 EVI2A ALAS2 DHFR PLAC8 HERC6 IFIH1 MLKL LGMN STAT2 SFTPB PML VCAN TCIRG1 TINAGL1 ADAR PARP12 SAMD9L XDH DAXX HPSE CASP4 NOD2 LIPG RNF213 PARP14 TRAFD1 GPR35 PARP11 UBE2L6 ANGPTL4 TLR3 HAP1 UBA7 IRF2 LY6E PLVAP ICAM1 DTX3L LAMP2 LYVE1 TAPBP CCNL1 IL2RG THEMIS2 ELOVL1 CCNL2 NXF1 ART3 TNFAIP3 TLR9 NAPSA ROBO4 CSRNP1 TAF1D ZNFX1 PFKFB3 VMP1 MALT1 SCARNA2 NEAT1 HMGCR ITPRIP TAP2 P2RY14 PRF1 IL15RA ZCCHC2 GCA CD40 SLC28A2 RNF31 SELL ASCC3 TDRD7 AREL1 ACAP1 CXCL11 FNBP4 FIRRE DDX60 SMG1 SP100 MX2 NAA25 SRRM2 CEACAM1 RHBDF2 WHAMM GTPBP2 CD53 GZMB KLRK1 XIST EVI2B SEMA7A AIM2 MCAM SDC3 NR1D1 C4B ANGPT2 CCL12 BDKRB2 CCL7 CD93 TANK DOT1L TNFRSF1B GBA OAS1B KCNJ15 CLCN7 TMEM209 ATP7A TEP1 ATP13A1 ZFYVE26 ALPK1 TPP1 JAK3 VPS13D OASL1 PTPRJ KLK1 MTHFR ARHGEF37 INHBB RNF225 MCOLN1 SCARF1 UBR4 SMCR8 SETDB2 LY6C1 SLCO3A1 SLC15A4 SLC23A2 CCN1 DOP1B DOCK2 NRROS SUSD6 HBB-BS H2-T23 H2-D1 H2-K1 ARHGAP17 FNDC3A TMEM131 MFAP3 TMEM67 TTC17 SZT2 NOCT SCARNA13 DCLRE1C KMT2D RESF1 LY6C2 IGTP H2-T22 GM4070 SERPINA3F H2-Q4 GM4951 H2-Q7 SLFN4 APOL9A LY6A TRIM30A IFIT3B IFI204 GVIN1 H2-Q6 OASL2 APOL9B SLFN2 MS4A6C IFI211 HBA-A2 MNDAL GBP8 FCGR1 MS4A6B PIRB MS4A4C LILR4B IFI205 MS4A6D NT5C3 GM49339 IFI209 PHF11D PHF11B TRIM30D HBA-A1 IFIT1BL1 H2-T24 SLFN8 9930111J21RIK1 9930111J21RIK2 IFI206 IFI203 H2-Q5 PSME2B H2-M3 IFI213 SLC9A8 P2RX7 SLC12A4 TSIX TPCN2 IFITM6 IFI202B GM11127 POM121 H2-K2 KCNA3 A930037H05RIK GM45221 SIRPB1A GM26397 AW011738 GM8989 GM24357 GM45193 DENND1A GM25360 GM37082 CD300LD5 GM10552 A430027C01RIK GM9574 C530050E15RIK GM28967 GM38372 GM26857 OLFR1396 G530012D18RIK F630028O10RIK GM47166 GM42664 F830112A20RIK GM27505 IFI214 CLEC4A1 ARHGAP27OS3 GM20489 LILRB4A F830016B08RIK GM12185 GM24119 GM18301 LY6I GM42549 H2-T-PS GBP11 IFI208 GM26981 GM6545 GM23262 9430034N14RIK GDAP10 GM8995 SCARNA10 GM25395 AC119228.1 GM22442 TMEM181B-PS TAZ SARS-COV-2 PHF11C IFI203-PS FAM196B BE692007 GM38377 GM37084 BC023105 GM37472 RETNLA AC174471.1 GM47260 9130208D14RIK GM37488 GM27694 GM20661 GM25939 NEMP2 IFI207 H2-Q10 GM8810 1810026B05RIK GM7030 TLR13 GM5960 MS4A4B A130071D04RIK GM28006 EVI2 GM18853 GM44283 CHRNB2 SIRPB1C GM14636 C130089K02RIK GM47087 GM49730 GM10499 GM23849 SLFN10-PS ZFP276 GM36931 IFIT1BL2 GM11425 GM27240 GM26316 GM26035 GM38020 CD300LD GM47657 GM44668 GM22988 GM24497 APOL10B GM37033 GM18852 GM43858 GM44292 GM31172 GM43010 GM27927 GM42659 GM26621 GM37589 GM43633 GM22009 GM45555 ZFP142 GM37376 SYT15 GM5970 GM38050 GM45223 GM20559 GM15821 GM26992 H2-Q2 GM17300 KLRA2 LNCPINT GM26716 GM37474 G530011O06RIK PHF11A GM15929 GM5431 CLEC4A3 GM24950 5830428M24RIK GM23119 MS4A14 A630001G21RIK GM40645 GM1966 GM6377 GM38357 I830077J02RIK GM15056 GM29233 GM43197 ZUP1 GM19412 TRIM34B AC123927.3 GM37420 GM37238 GM20547 GM43462 GM38236 GM16185 CT025731.2 ZFP579 Mock v SARS-CoV-2 NHBE GSE147507 down GAMT GBP6 CDK19 DEK PRKAB2 SYTL5 WDHD1 DEPDC1B ADPRH ZNF397 PGAP1 ZNF395 ZNF273 SGMS2 ADCY1 HPGD IPP WDR63 GPR155 FLRT3 FLRT2 PLCE1 RPL17 WLS PPARGC1A EXPH5 ZNF268 C2ORF81 FZD1 LINC00672 CYP4F3 NR2F2 NR1D2 RMDN1 PBX1 BACE1 VANGL2 FAM111A TCN1 KCNMA1 FAT2 PADI3 FAT4 DZIP3 PRR15 CEP68 LYPLAL1 UNC119B ANAPC13 LXN SCOC GNS RPL9 MYSM1 SMC2 MYLK SMC3 EPS8 ZXDA SCPEP1 KIAA1109 SCP2 FAM110C RPL39 PRKACB ZBTB7C ZNF488 ZNF365 CHKA BBOX1 PRSS16 TET2 ADAM32 C1ORF21 CENPE CENPF SLC7A8 LYRM7 PXMP4 CCDC6 CENPP CEP44 POT1 TMEM106B TFCP2L1 YTHDC2 SEL1L ABHD2 ENDOD1 TRIM2 AEBP2 CYB561D1 SKA2 TMEM168 HLCS EXTL2 TIMP3 ZNF468 CEP55 DLGAP5 MEF2A MBNL2 MBNL3 NANOS1 MAMDC2 ELOVL4 PTGR2 FMO5 SULF2 TMEM60 CASD1 RNF128 LPCAT3 ZNF579 EBAG9 SERPINB13 SPIN3 STON2 ADAM23 STON1 FMN1 EFCAB7 PRSS23 CENPA LYST EEA1 NUDT12 IMPA2 GPNMB METTL7A GCNT4 ANKRD50 ZNF566 MYLIP C8ORF37 FBXW7 MAP3K2 GSR CYBRD1 POU2AF1 HIPK2 RAB30 SLC9A9 LY6D PDCD4 PHIP FKBP5 DSC2 GOLGA8B DSC3 PTPN4 SPESP1 NFIX PUS10 VTCN1 TUSC3 PROS1 CREBL2 CLU LCLAT1 CXCL14 FRY FAM214A FOXO1 PPP1CC SLK ABLIM1 HMGN5 IYD BCL2L11 RAB26 PTAR1 ANKAR UBN2 DTD2 C8ORF44 STOX2 PMS1 CPA4 SEMA6D FANCI SLC15A2 CERS6 F2R IGFBP6 OSBPL6 CCDC14 CCDC15 MAF FRMD5 GGCT RGCC ERF PCYOX1 PFKFB2 SLC26A2 FAM13C ANKRD12 C1ORF210 FGF1 OLFML2A RHOBTB3 ABHD13 SESN1 ABHD10 SESN3 EIF4EBP2 CLCA2 SRGAP3 CLCA4 ITGA4 LANCL1 SP3 UST CPE ZNF639 CPD MFAP3 MCM4 CDK1 DSG2 DSG3 AAK1 SERINC1 CNTNAP3 HMMR NREP RNPC3 SPATA6 DUSP10 ALAD ZNF507 DNAJB4 C21ORF91 FNIP1 LIMCH1 CPT1A DST CCDC58 ATRX TP53INP1 SYT16 SORL1 MCOLN3 CTDSPL MBOAT1 RAB15 MAB21L1 CD109 SMPDL3A TLL2 CCDC60 RNF11 PRPS2 NCKAP5 FRRS1 PSCA SEMA3E FHL2 SYNE1 PTEN CXXC5 PPM1H DCAF17 THBD STK32A ZNF608 ARRB1 PTPRZ1 ZNF607 TNNI2 SLITRK6 CEP152 PCDH7 TLK1 EPHB3 ATP7A ACVR1 IFITM10 TINCR ACSL1 PLEKHA5 CRNKL1 MTUS1 ZNF718 RRAGD PPP1R3C SOAT1 MXRA5 EPHA4 MT1E SATB1 VIPR1 CALML3 PRCP AQP3 SFRP1 PARD6G FRAT1 NHLH2 ZNF704 SLAMF7 PINLYP TRMT1L TMEM50B PLA2G4F ARRDC4 ANK3 PUM2 ACER2 PIK3R1 KLHDC8B TCHHL1 SSX2IP SCN2B VGLL3 APOBEC3C SPARC SLC35D1 CREBRF JMJD1C MT1X DCUN1D1 TP53AIP1 SOX2 MIER3 CMYA5 PPAT ANKH PDK4 LGALS8 APOD SOX6 HEG1 STRBP TSC22D3 KLHL4 RHOB VAV3 ANLN KITLG VSNL1 KRT15 FAM181B MEGF9 ARHGEF6 VWA8 TLR3 KPRP TENM3 PTPRS SLC44A5 ZCCHC10 CITED2 MAOB FAM43A CETN3 TOP2A SLC35F5 SLC7A11 CNTRL CTSH NFIL3 CD36 CBR1 MME SCD5 NCR3LG1 CREG1 RANBP6 MPP7 MN1 PER3 EPGN DPY19L4 STK17B FAM171B APBA1 NRP1 PRICKLE1 CLDN23 PGRMC2 PCM1 SPTLC3 CAMK2N1 CREG2 ENPP5 REV3L ANKMY1 GEN1 TGFB3 NPNT DENND4C LMO4 ATG9B ARHGAP29 TMEM131 TMEM135 GNPDA1 FAM161A POLE2 SCNN1B WDFY1 LRP11 CAPS CD86 HFE LOXL4 FBLN2 MANEA CCND2 CAPN7 HSD17B3 HSF2 TBC1D15 SASH1 KRT6C AASDHPPT SMAD5 MANBA CCDC138 CKAP2 SYT8 ALDH3A2 CCNA2 DLG2 GCLC APPBP2 CDH10 ALDH3A1 MAP7D2 TCF4 MUC20 FGFR2 CCDC121 CCDC126 GXYLT1 KLHL13 TRIAP1 ESPN SYDE2 CCNB1 NMRK1 FPGT MUC16 IL6R PRODH EGFL6 CAV1 GALNT1 BMP7 GULP1 BMP4 JMY HOOK1 RBM20 GPSM2 TSEN15 NID1 UBA5 LMNB1 PIK3R3 PIK3R2 PHTF2 IRF2BPL AGPAT5 DBP GHR BLNK MAN1A2 ZNF189 EYA1 DYNLT3 LGI3 ZNF180 LCA5 DCK TIAM2 WEE1 LMBRD2 MLPH TBC1D5 PPDPF TBC1D8 FAM131B PDE5A SSBP2 CHURC1 CAMK2D PCDHGB5 TNKS2 PKD2 ADD3 SENP8 UFL1 NT5DC3 GNA13 PALMD MAN1C1 DIP2B Mock v SARS-CoV-2 NHBE GSE147507 up STARD5 PRELID2 PRELID1 MX1 MX2 AFAP1 GTPBP2 PSMB9 NECAP2 FEZ1 POLR3E PSMC3 CDA ASB2 COL12A1 CWH43 NEURL1B PPP4R1 MYC ST3GAL5 PSMD2 MVB12A PRSS3 GBP5 S100A12 EPSTI1 AFAP1L1 PLK3 EHD1 SQLE FERMT1 SULT2B1 FOSL1 MLLT11 GJB3 FHDC1 GJB2 UCK2 PLSCR1 GJB4 PSME2 HYOU1 CHST2 ATF4 CFB OGDH PID1 PLEK2 RRP1 PDGFB ENO2 RRP9 MRPL12 C3 LIPG GPR176 ZC3H12A ZC3H12C EPB41L3 TEPP HMOX2 IER3 LYN ANXA1 DUSP4 ANXA3 DUSP1 RIPK3 CCL20 ANXA6 FN1 TMEM171 SAMD4A TUBB2A FAHD2A MMP10 MMP13 LETM1 FXYD5 PXDN SERPINA3 ARF4 BTG3 BTG1 FLII PQBP1 SHB CSRP1 STAP2 HSD11B1 ELOVL1 SERPINB4 SERPINB2 IFNGR1 STAT1 SERPINB1 ARG2 IFNGR2 STAT2 G0S2 WNT7A F3 SERPINB8 TUBB4B ADAM19 ANGPTL4 HBEGF RNF122 IVL PGLYRP4 CRCT1 PTAFR TMEM51 TUBA1A FSTL3 MYPN PTGS2 IFIH1 PSMB8 TUBA1C TMEM147 TUBA1B ADAM28 NAMPT ADAMTSL4 ANXA9 BID IKBKE ZSWIM4 CSGALNACT1 SEMA4B BIK TOR1B TFPI2 TAP2 TAP1 NCCRP1 TICAM1 CDC25B TUBA4A ZNF319 S100A7 ADAM8 DHCR7 S100A9 SLC25A37 RHCG S100A8 OSBP2 CSF3 CSF2 PPP1R15A MPV17L2 TNC TNF CXCL16 C1ORF74 TUBB3 HEPHL1 LAMP3 HAS3 FLNB MAP3K8 LDLR SEMA6A MAP2K3 MAP2K1 FST IGFBP3 TRAF3 TNFRSF10A NFKB1 NFKB2 ACLY MAFF STK25 CDC42EP2 LCN2 XAF1 BIRC3 NCF2 UPK2 C15ORF62 ISG20L2 SAT1 CORO1A STK10 ZFP57 C6ORF223 HYI PI3 EFHD2 C1QTNF1 SEMA7A ITGA5 DTX3L HMGCS1 TPCN1 BCL3 ZG16B CDRT1 NDUFB8 CCDC24 C15ORF48 PSTPIP2 DRAM1 P2RY6 TRIM47 B4GALNT2 MARCKSL1 PPP1R14B CEACAM19 SLC13A5 SMOX PLEKHG7 MYO10 BPGM RANGAP1 NAGK MYO1C CDC34 MYO1B KCTD11 C1R ALAS1 C1S ITGB3 KIAA0100 THSD1 SRM HDAC7 SLC25A28 TRIM25 UPP1 TRIM21 ENTPD3 KRT4 ACTN1 MOGS PPP2R1A EREG PML ASS1 FNDC4 LAP3 IFI27 SLPI TRIM14 SERHL2 TRIM16 EPHA2 CES1 IFITM2 IFITM3 AHCYL2 IFITM1 GLRX UBE2L6 CARHSP1 PNP HERC6 RAB11FIP1 NUAK2 SLAMF9 E2F4 N4BP3 N4BP1 TNFSF15 SLC11A2 PLA2G4C TNFSF14 SLC6A14 IL36G CSNK1E IGFL1 TUBG1 IFI44 ALOX15B PARP14 PARP12 VNN1 CDCP1 VNN3 TLCD1 SMTN RAET1L SPRR1A SPRR1B PTGES IL1RN IFI35 LGALSL IFIT1 PWP2 ICAM1 IFIT3 HELZ2 CYP27B1 MICAL2 HIVEP2 ZBED2 LGALS9 STAT5A IZUMO4 EDN1 NCOA7 TUBB VEGFC LIF RHOF AMPD3 NBPF14 OSMR MTSS1 VEGFA RHOC PDZK1IP1 IL1A TLR2 BST2 IL1B KRT17 KRT16 COPG1 RHOV ARHGEF2 CSRNP1 MAOA SDC4 STC1 KRT24 TGFA KRT23 PCSK9 NEDD9 ADRB2 SOCS3 SBNO2 DUOX2 SH3PXD2B SPRR2A SPRR2D SPRR2E CTSC IL32 RFTN1 MRPS21 PRMT1 PARP9 TTC9 SAA2 TRIML2 SAA1 HDGF ERRFI1 CSTB CSTA SLC43A3 AKR1B1 SH3RF2 ARNTL2 SIPA1L1 AKAP12 HYAL1 XDH CCT7 MFSD2A CCT5 TUFM GABRP CD74 LIG3 ATP1B1 ARHGAP25 IFI44L PPIF ULBP2 HHIPL1 TYMP CD82 SLFN5 PRDM1 IFI6 RBFA SAMD9L NDRG2 RELB PDPN HSD17B2 NLRP1 RELT MICA MICB KRT6B FDPS SMAD3 DDX58 INHBA USB1 ISG15 CTPS1 PDIA5 EFNA1 MUC21 IL7R USP54 WWC1 SH3KBP1 KLHL18 PLAU PLAT ETS1 SLC2A6 LTBP2 DAPP1 TGM2 HCAR3 TGM1 PODXL KIF3C MLKL TGM5 CD99 POU2F2 MMP1 MRGPRX3 LAMB3 MSN NFKBIZ OAS1 TNIP1 MMP9 NFKBIA IL6 BMP2 OAS2 TNIP2 OAS3 IRF9 RBMS2 IRF7 NFKBIE IDI1 B4GALT1 B4GALT2 STOML1 MAST4 BCL2A1 NOP2 TNFAIP3 HMGB3 DTX2 TNFAIP1 CXCL2 TNFAIP2 CXCL1 LAMC2 FUT3 FUT2 CXCL3 CXCL6 CXCL5 HK2 FAM83G IRAK2 IRAK3 FAM83A MYEOV LPXN NAA10 TINF2 LSS FNDC3B PLAUR KRT75 SGPP2 SOD2 HSH2D FAM167A COL8A1 ALDH1A3 LTB SPRY4 FAM50A S100P TRIB2 ZP3 PFDN6 OTUB2 DDX28 RND1 SAMHD1 POLB GNA15 EVA1C GNA12 KYNU MAPK3 NRCAM ZNF169 Mock v SARS-CoV-2 VeroE6 24h GSE153940 down CASP6 TIMM8B IFNAR1 ERMP1 FKBP1A PIGS PBLD ATP6AP1 CTSL GHITM VCP NPTN ETFA PRKACA NEK9 CDH17 HNF4G ACADM NPC2 RBL2 DPY19L1 PPT1 CYB5B AP3B1 NDRG1 SRP54 MPZL1 RAB18 AGPS GGCX ERP44 POGLUT2 EPB41L3 CLCC1 APOBEC3G MSN STOM MAT2B PLS3 CAT GOLGB1 PPIA TOP2B G3BP2 NFS1 ITFG1 MDH1 GLO1 RBKS CLDN10 ADH5 COX15 TMEM30A PAIP1 UNC119B TRIM37 ACO1 RNF167 PSMC3IP DHRS1 RNF128 OCIAD2 NDUFA10 SH3D19 TSPAN6 NDUFB2 CNN3 DSG2 EPCAM SCIN CYBRD1 DYNLRB2 ACOT13 ATP1A1 SEL1L PDIA6 STMN1 DDOST PGD SEC24C GANAB UNC50 TMED9 CMTM6 SLC6A6 DDB1 NCSTN NDUFB5 SCARB2 CTSB FKBP9 SCPEP1 POMP RBBP8 ALCAM ANXA5 MRPL15 AURKA DLGAP5 LTA4H KIF11 HEXB IDH1 MICU1 PRDX3 PAPSS1 SPATS2L TPI1 AKR1C3 CTNNA1 MMP1 APLP2 TGFBR1 B4GALT4 NRDC TMOD3 MCCC2 WLS RAB4A PSMA3 RBM47 SMARCA1 ECT2 CKAP2 HMGB2 LGMN CLDN2 EPHX1 PIPOX SLC3A1 TSC22D1 CAV2 TFG PSENEN PSME2 GNAI2 SPTSSA AKR1A1 CRYAB COX17 SPARC SYF2 ARL2BP GSTP1 MORF4L2 ITM2B NPNT GNG10 BCAP31 CST3 EFEMP1 BTG1 LYZ SNRPD2 LAMP2 PSMB6 COX8A PFDN6 GLUL CETN2 PLXDC2 TP53INP1 PDCD4 NDFIP1 NDUFA5 NDUFA2 SLC39A1 PSAP CAPZA2 RBM3 TMED10 GNS GNG11 VPS26A ARL1 CETN3 NUCKS1 ANAPC5 OAT ACADSB SERINC3 PGRMC1 TMED2 MIEN1 BNIP3L SPOCK3 SERPINI1 S100A3 PLA2R1 TSPAN31 NDUFS2 ATRAID DPM3 UBE2A MAGT1 PRR13 HAT1 MMP10 MRPL46 VAMP3 LAMTOR2 WBP2 RRM1 ATP6V1C1 MSRB2 CHMP5 TMEM205 PJA2 NDUFAB1 ARL6IP5 MIF AIFM1 EPDR1 IDH3B SARNP YPEL5 DDX18 MRPL13 AHCY MAGOH MRPL42 DNER ANP32E RCN2 TIMP2 MSH2 WDR54 UCHL5 NDUFA8 ZDHHC6 SYPL1 PCMT1 FAM107B NIT2 PDCD10 LACTB2 VAMP7 SPCS1 HMGN3 GTF3C6 GMNN LAMB1 SCG5 C18ORF32 UBA3 CBX1 USO1 NDUFA9 FOLR1 HSD17B11 TXNDC12 MFAP1 XPR1 TOB1 MKRN1 GLB1 APOBEC3C IK MSMO1 ZNF385B HABP2 YIPF6 ZMPSTE24 CDH6 CD46 MCM6 RPA3 TRIAP1 SLIRP PIGW PIGT SFXN3 PSIP1 BBS2 ASRGL1 RFC2 PDZK1 PRPS2 BET1 STARD4 GLG1 GALNT11 CLUAP1 CCDC47 RALBP1 ATP10D CTSA COX5B RAB29 CD44 ADAMTS9 TWF1 VPS29 PEX2 PPA2 RNF5 NCF2 CA12 ARCN1 GBA SELENOF STXBP3 UGP2 SNX6 COPA HTATIP2 SAE1 GDE1 COX16 FMC1 CALCOCO2 SPP1 YIPF5 SYAP1 YIPF4 PPM1A ALDH3A2 ATP1B3 ASAH1 CMPK1 COPS6 CIRBP ACAT1 ATP5PF ACAA2 C11ORF58 BCCIP SMIM3 PTER STT3B TMEM123 THEM4 HLTF CWC15 THOC7 MSI2 TPP1 PMM2 GLT8D1 CPNE3 ROBO2 FAM3C CISD2 FBXO32 CYB561A3 MRPS22 IVD DAP ADIPOR2 MRPL40 PRKDC TMEM106B IL13RA1 SPTLC3 GCSH ICMT PHF6 MRS2 MCM3 PPP2R5D CCDC88A RRM2B PSMA5 LAPTM4B TMEM59 SELENOT SFXN1 HIBADH AHCYL1 BCKDHB NUDT21 SLC39A6 F11R DUT IARS2 OAZ2 GPC4 MFSD1 RHOBTB1 LPIN2 FAM168B DPCD EIF2B1 TSPAN12 TMX4 RPA1 B4GALNT2 NDUFB8 PXMP4 LANCL1 DCUN1D1 PGRMC2 CD109 CLDND1 RPL39L PHYH HSDL2 MICOS13 BEX3 H2AZ2 NIPAL3 ATP11A RBBP9 ERGIC2 PYURF BLOC1S5 PLPP5 SLIT2 VMA21 PAIP2B PCCB ECI2 NTPCR EFCAB14 PIGN DENR BDH2 STRAP SNAP23 COMMD7 CMC4 SMIM14 RDH10 DYNC1I2 STRADB JADE3 GABRA2 ZFAND6 JPT2 WASHC3 TRARG1 DARS1 GNG4 SLC36A4 KIDINS220 CASC4 TCTN2 EAPP PLAAT3 SRBD1 LIX1L CCDC25 TMEM35B TMEM106C SLC39A9 TMEM185A EXOC5 Mock v SARS-CoV-2 VeroE6 24h GSE153940 up ADAMTS1 PTPN14 XPO6 ABCC1 LARP1 CISD3 BCAR1 RRP9 ASAP2 EP300 GOLGA3 KLF6 NFKB1 CEP68 BRD2 FRMD6 GIGYF2 MARK3 FAU AAR2 PI4KB NSD2 ISG15 SRC MARK2 SLC7A6OS TIMM44 YARS2 NCOA5 RPLP2 AUTS2 RPL27 SH3RF1 GATAD2B SNORD17 GADD45A GPRC5A RPS14 SRRT RMDN3 ADCY7 USF1 MBD6 IL4R ZNF316 MICAL1 SLC3A2 ARHGEF10L ATG4B AKAP1 CIC SMAD7 XXYLT1 RAB20 ADAM15 LDLR DDIT4 STARD13 SPRY2 SLCO4A1 DUSP7 TBL2 SNX8 ZNF574 MIB2 SEMA4C U1 NUAK1 IWS1 B4GALT2 PHOSPHO1 MYC TUFT1 NOTCH1 KLF10 TGFBR2 GADD45B TRAK1 PLAUR RDH13 SEMA4B IFFO2 ARHGEF5 KRT80 DNAJA3 BCL9 PRICKLE2 AXIN1 ATF3 MAP2K3 STK40 BCL3 PHF12 KMT2B RERE CREBBP TNFRSF1A KDM4B ZNF385A NUAK2 PHC2 SBNO2 TAP1 LRP8 PML SOCS3 PIM1 INHBA SLC25A22 EHD4 ZFP36 LRFN4 IER3 IRF1 DUSP1 NFKBIA IRF9 JUN S100A4 PISD ATF4 PIM3 KDM6B PPP1R15A THNSL2 TNFAIP3 ZNF205 NAT8L AMOTL2 BRD1 PPP1R15B NEURL3 LIF IRS2 IER5 NGF YOD1 ZNF367 BHLHE40 MAFF NFKBIZ TSC22D2 SERTAD2 CDC42EP3 PFKFB3 KANSL1 FOXO3 IL11 MSL2 C12ORF10 PPP1R18 GNA13 TTC7B RHPN2 FXR2 KLF7 YTHDF1 NOP14 ID1 TSPYL4 SURF2 PURB NOA1 MAML1 SFSWAP MUL1 ABL2 GRAMD4 ZC3HAV1 CEP131 ANKRD13B XRCC1 CPNE2 IFI6 FNBP4 SNORA21 RNF166 UBN1 LPCAT1 TPRA1 PLK2 PMAIP1 ARL5B RHBDF2 OPTN TRIM26 AMPD2 PDLIM2 SESN2 TRIB1 LMCD1 SEMA7A REXO1 STX5 CAMSAP1 RGS19 PIK3CD AGO2 SPEN XBP1 NFKB2 TGFBRAP1 CARS2 HAUS8 ELL AIP DDX56 ZNRD1 TRIM11 TRAF2 SMIM12 ATP23 ATP6V1H CITED2 MID1IP1 URGCP ANKRD11 EHMT1 FLCN HIRA EPHA2 RASSF1 ZBTB10 SOCS6 HMGXB3 KLHL21 MEF2D ATXN1 DUS3L PPP1R3B VPS18 CHST3 PODXL AKAP13 SIRT7 RHOBTB2 KATNB1 SNORA48 E2F4 NOP56 RRP12 RAPGEF1 SERTAD3 SLC38A5 DAPK3 AMOTL1 PLEKHM2 UCK2 TXNDC11 PPP1R12A WDR74 ATP8B2 TRIM4 NFKBIL1 TNIP2 TAB1 TRIP10 ZFHX3 RNF216 PC ZBED4 SRF TGFA LMTK2 RREB1 ARID1A MRTFA PIAS4 ZBTB18 DAB2IP CHD6 TSPAN15 ASXL1 BACE2 DDX27 ARHGAP6 TNFRSF10B AMBRA1 SLC30A1 PPM1D RAB24 BCL2L13 LMF1 MTA1 TRIM35 ANKLE2 SNORA80C LAMA4 TRAF4 CCN1 KMT5A ILKAP SART3 NUP50 REXO4 BYSL POC1A RRS1 IPO4 WDR4 ING1 ZNF282 ZNF746 GRK6 PLCG1 MAP2K7 IMP3 GTF3C4 SCAF4 TBC1D22B RBM33 GGA3 ARHGAP17 IP6K1 MTMR3 EPS15L1 AEN KDM2A ABTB2 FEM1A GPATCH2L TADA2B ARHGEF28 L1CAM GSE1 TMEM201 ISG20L2 INTS5 NOC4L DIDO1 RBM15 KAT6A CREBZF RAD54L2 PDZD8 CDK13 CLIP1 PPP4R3A DNAJC4 GRAMD1A UCKL1 PDLIM4 TRIO ZNF609 ZMIZ2 HPS6 TEAD4 FARSA SETD1A ZNF598 UBE2O MORC2 ZBTB7A CAPN15 IRGQ SNORA47 ARID4B SCARNA6 TGIF2 SNORA57 KMT2D GTF2H4 SNTB1 TTC28 PID1 DGKD SH3BP5 PRR14 THAP3 U3 SNORD15 C1ORF35 ARHGEF17 ANKS1A DDX49 ADPRHL2 MED27 ZXDC ZMYND8 FAM193A RUFY1 B3GALT6 PHF1 ACSF3 SPECC1 NELFA TMEM222 CLEC16A MAU2 SNORA10B SNORA16A ARFGAP1 N EEF1AKMT4 SNORD94 SCARNA20 MARCHF9 AFF1 SNORA46 SNORA64 ITPRID2 TFAP4 S RTL6 SNORA52 PHF2 ASB6 SNORA38B NUC SRP GP05 KAT8 SH3BP5L MED17 FAM53C RILPL1 ZNF394 CARS1 RNF217 WDR33 TOP3A ZNF496 SNORA62 TLNRD1 MTSS2 SNORA17A PSMG3 WIZ SNORA74 SNORA80B POLR1E PANK2 SCARNA22 SNORA5B PGS1 RIN1 ORF7A SNORA71 SUGP1 ABT1 NOB1 ORF1AB ARID3A SNORA37 KLHL26 TACO1 UNK SPPL3 DIPK1B ORF3A SARS-CoV-2 Mock v DMSO ACE2-A549 GSE154613 down HEXIM2 HEXIM1 POLR2J3 BTBD19 BTBD16 AHNAK2 AFAP1 HPCAL1 SOX12 ARMC9 MIR3916 NISCH COL1A1 ABCA12 ASB9 CDK10 PLCD1 SNORD87 CYB5RL RNF220 PLCD4 PRR7-AS1 PLCD3 CYFIP2 ENPEP PDXK MAML3 ADCY1 AHNAK SERPINE1 IFT172 TESK1 LCAT ADCY9 LSM10 KCNQ1OT1 PREX1 FLRT2 PLCE1 GNAT2 JAG2 ZNF142 NEBL PLK1 VPS13D SLFNL1-AS1 CEL TYSND1 PRKCA FN3KRP HRNR EHD2 BCAM HOGA1 TCN2 LOC100128398 C6ORF89 VAMP1 SFXN3 CHST3 MAPKBP1 COPS7B VPS26B MYLK GRIN2B FAM134A EPB41L1 FLJ45513 MYO18A ZNF488 ANXA2 MYOF HOXB-AS3 PTCH2 CGN EMP1 PTCH1 NUTF2 FAHD2A TMC4 GOLGA2P5 TTLL3 PI4KA PHF17 ZNF117 PHF19 RCCD1 LOC100131434 LINC00842 ERGIC1 ELOF1 ABHD4 LRRC6 IQGAP3 PPP2R4 NCKIPSD AP1M2 PPARA DGAT2 LOC100131691 LDOC1 CIT BAAT DDB2 TOM1L2 APITD1 COL4A3 COL4A4 GATS MYRF SLC29A1 LGR4 STAG3L2 PIGT ZSWIM1 DPY19L2P1 PIGS SMG5 STAG3L3 PYGB TCF25 SMG6 SMPD3 NDST1 HLA-DMB TMSB4Y LOC100129034 MPRIP AGR2 METTL7B NINL LOC388692 AGK AKR1E2 USP5 FBXO17 GPR56 TPM2 PCDH9 SEMA4G DCDC5 MOB3A RNF40 DCDC2 TUBA4A MADD C1ORF116 KAT6B ITGA11 BAIAP2-AS1 S100A4 AJUBA LOC401320 GOLGA8A UCKL1-AS1 KANK2 RNASEH2C PHLDB1 CRCP ANKRD36 HR CLU FAM105B ZBTB20 CTGF KIAA0513 BCL2L12 ANKAR KIAA0754 FLNA CEP250 FLNB ZNF789 ZNF425 KCNH1 IGFBP2 PCYT2 ATP8B3 ARL17A FRMD3 ACLY HNF1A-AS1 SYNJ2 KIFC1 TBXAS1 SLC25A53 MALAT1 DNMT1 ZNF532 PFKFB3 CUL7 ZNF512B C11ORF92 FAM13A LINC00261 FAM228B FTX LOC284751 OLFML2A ELFN2 OSBPL10 WISP2 MMP24 IPO9 CTIF GLIPR2 MMP28 LOC100289137 C1QTNF6 CNTNAP3B THEM6 ZNF767 SRGAP3 MAP2K6 AP2M1 SYBU PTPN18 KSR2 HTR1D AHSA2 DHCR24 MARCH4 ZZEF1 IRAK1BP1 IL3RA NF2 CDR2L TNRC6A RASGRF1 POMT2 RAP1GAP ADRA1B CYR61 GTF3C1 LBH ADAMTS15 KLC4 LINC00319 DENND3 PDDC1 HIF1AN ME3 MPDZ BCAS1 PGPEP1 ZNF862 ACVR2B-AS1 PVRIG SPDYE5 COBL SYT15 C1ORF86 SORL1 MIR181A2HG TPD52L1 EVC SLC25A19 KLF7 MYO1D SYT13 ZNF618 ZNF738 PABPC1L ANAPC1 ARHGAP11B WIPF1 UNC93B1 ITGB5 RPL32P3 SYNE1 KIAA0100 ARRB2 LENG8 SLC5A11 PIK3C2B USH1C ADAMTS6 CACNG8 LOC100130417 ZNF608 ARRB1 ZNF726 DCAF11 STK32B PLEKHH2 PCBD1 CACNG4 DIS3L2 ACTN4 TRAP1 NBEAL2 PLEKHA7 SFRP4 MALL LOC646762 PC FRAS1 PPP1R3C NEURL2 ZNF713 FAM64A TLN2 ALPK2 PFN1 NEIL1 ITIH4 LOC283922 LINC00085 GEMIN8P4 AQP1 RAB11FIP1 HERC2 C10ORF107 C10ORF54 CPNE2 APBB3 FAM63A EYS TMEM184A TNFSF15 TANGO2 TUBG2 SNHG4 RPS26 BDNF-AS ANKRD18A IGSF9B LRTOMT GLIPR1L2 EZR GRB7 ANP32A-IT1 SLC22A5 FUT10 MACF1 PDE1C SOGA2 KLHDC7A DPF1 MICAL1 SYNPO ATP6V0A1 AGFG2 ACAD8 GABBR1 GREB1 GAB2 KLHL4 NBPF15 SNAP91 VAV3 CLDN15 RDH5 CAMK1 AKR1B10 RHOU SDCCAG8 AVPI1 DOT1L TRAM2 KIF12 LIMD1 ACACB SEC14L1 CLTCL1 ANKRD1 LMCD1 PARP6 EIF5AL1 GBF1 MTSS1L SRCRB4D H1FX-AS1 GP1BA FLJ38109 FOXD2-AS1 TSSK4 PPYR1 APBA1 MAPRE2 TSSK3 FOXA2 C10ORF68 NUDT1 MKI67 PTMS GUK1 CAMK2N1 XPO7 SPTAN1 GIT2 ANKMY1 LMO1 FLJ45340 G6PD SCARA3 LIG1 LOC100272228 DOK4 AXL BAMBI TMEM139 PROB1 SIDT2 YPEL1 MYADM IVNS1ABP NOL3 NDRG1 GALNT10 SCUBE3 HIST1H2AG S1PR3 PDE8B PCYT1A SYT2 LOC100131096 EPHX2 CCDC136 DCAKD MINK1 TBCD RNASEH1 SMAD7 PRPF6 ALDH3A2 SPTY2D1-AS1 KIF18B ALDH3A1 TRNP1 MATN2 CDHR5 CLASRP CDH17 FGFR4 VCL CCDC124 SLC2A1 KIAA1199 LRRC37A4P CPLX2 HOXB13 PLCXD3 PLCXD1 TMEM221 PTRF TMEM107 ALDH3B1 VARS2 ABCC2 GUSBP2 GALNT5 KDM4D CAV2 CAV1 LAMB2 IQCE GRHPR BMP1 MYH9 LPIN3 NCAM1 NCALD DDX41 ALOX12 GRK4 FYCO1 UPK1B LASP1 PDLIM7 DCXR GIP MLPH MYO15B PAR5 ERCC2 SLFNL1 SPRY2 RSPH1 SSBP4 HIST1H2BO KRT80 THRA CRMP1 PKD1L2 SPATA20 DCTN1 THBS1 ADD2 SPRED3 CYTH3 POLE CBS POLD2 LRIG2 EPS8L2 LOC100131067 PDE6A PRRT3-AS1 CYTH2 SARS-CoV-2 Mock v DMSO ACE2-A549 GSE154613 up ACOT9 FRS3 LARP4 GDAP2 KIAA1217 ZFYVE16 MARCKS FEZ1 CPEB4 CPVL OPTN ATF3 EHF COL12A1 SERPINE2 PON2 C4BPA BACH1 SLAIN1 TFPI CLDN1 DLL4 APOL6 PPP4R2 UGP2 LACTB STOM CYP1B1 GBP1 GBP3 APOL1 GBP2 ST3GAL4 GABARAPL1 ABCA1 EDEM1 PLK2 KLF10 BAZ1A ELL2 FOSL2 PTP4A2 PLEKHS1 FOSL1 ABTB2 GJB2 PLSCR1 SLCO5A1 TDP2 CFB PTP4A1 LXN CDC42SE2 LOC100289092 UXS1 F11R HIF1A C3 GJA1 ALCAM ZC3H12A TDO2 ZC3H12C CCRN4L NKX3-1 IER2 IER5 IER3 SLC19A3 DUSP5 LYN DUSP6 TRMT10C JUN CCL20 GABRA5 RAB7L1 CP SIRT1 C6ORF62 TMC5 CYLD FAM210A ZEB2 BHLHE40 RNF145 CRLF2 SERPINA3 BTG3 DOM3Z SLC7A2 MRPL33 TMEM165 CASP10 RIPK2 RPS27A IFNGR1 STAT1 G0S2 FOS SERPINB8 SERPINB9 PTGR1 CTSL1 ADAM17 FOSB ETNK1 USO1 TMEM39A PLIN2 GOPC FSTL1 CLINT1 ERO1L PTGS2 FOXQ1 NAMPT RSPO3 RICTOR ZNF567 BID OLR1 IKBKE JAK2 ZSWIM4 PHLDA1 MREG TLE1 PRRX2 IPMK TFPI2 ZBTB10 TC2N PNRC1 CDC25B C6ORF141 RAB31 CSDA UBLCP1 COPS2 PDCD5 SLC25A30 IL6ST RHCG PPP1R15B PHLDB2 CSF1 CCNT1 PPP1R15A ZBTB21 AHR PLOD2 BZW2 PAPSS2 FGD6 ZFP36 ABLIM3 HAS2 RNF19B SLC39A8 MAP3K8 KPNA4 MAP2K3 SLMO2 IGFBP4 C6ORF120 FOXN2 NFKB1 NFKB2 MFHAS1 RCAN1 MAFF FBXO30 LCN2 IFNAR1 BIRC3 IFNAR2 MAP3K13 ANKRD33B CLSTN3 NAB1 IRS2 ANKRD12 CREM RLF SAT1 SLCO2B1 GLIPR1 TOM1 TNFRSF9 C1QTNF1 EIF5B GFPT1 DTX3L GFPT2 ITGA2 CFLAR PTPN12 NPC1 PION BCL6 BCL3 SLC26A9 SP6 TOP1 ACO1 NFE2L2 SNAP25 CNTNAP1 SYCP2L DUSP16 SAV1 C15ORF48 DUSP10 DRAM1 LOC643201 RDH10 C10ORF10 LBP DNAJB9 ZNF503 MCL1 SMIM13 COA6 PLEKHG2 NDUFA5 UNC5D KLF5 PTBP3 KLF6 PPAP2B TRIM36 ZNF614 TRIM37 ZNF613 RAB18 MAK16 CCDC71L CEBPB C1R CEBPD FRRS1 TRIM31 C1S CEBPG LOC645638 SQRDL THBD TRIM25 TLK2 CCL2 NCK1 SLC25A25 ESCO1 RUNX1 ACSL4 EREG PML ASS1 LACC1 SLPI TFAM EPAS1 SLC46A3 SLC23A2 TIFA GLRX ITIH2 UBE2L6 STRIP2 NUAK2 IFI16 B2M SLC12A7 CCNL1 EGR1 XBP1 ARRDC3 SLC11A2 PLA2G4C TNFSF14 RASSF8 MANF PLA2G4A PAPPA C8ORF4 SNHG16 VNN1 PTGES RBAK VEZT ICAM1 LPAR1 TNS1 GNG11 SOX2 MIER3 FTH1 HIVEP2 HIVEP1 ZBED5 STAT5A CTSB NCOA7 NCOA4 LIF AMPD3 ZHX2 OSMR PDZK1IP1 IL1A CLDN12 IL1B RHOQ ID1 RHOV SDE2 SGK1 CLIC4 SDC4 SLC44A1 ZFAS1 STC1 VLDLR CTSS SOCS3 SBNO2 UGCG HINT3 NFIL3 TMED7 SOCS5 SOCS6 CTSC TMED5 MMD IL32 GCH1 AKR1C2 AKR1C1 PROX1 CREG1 UBE2E1 PARP9 PDP1 STK17A RIT1 B3GNT5 SAA2 TRIML2 SAA1 HDGF CD47 CD46 DCP2 CD44 NRP1 ZDHHC21 ROBO1 ARNTL2 SERTAD2 RSRC2 HDX XDH RAB8B CD55 RARRES1 CA12 MORC4 IL4R GDF15 DENND4C ATP1B1 PDGFRL ERN1 TMEM133 SLFN11 DNAJB11 TGFBI STEAP2 OTUD1 RAI14 STEAP1 TYMP CD83 ITPRIP ZFAND5 SLFN5 PRDM1 ARID4B SAMD9L RELB RASD1 ARHGAP42 BMPER SPTSSA C1RL TBC1D12 NDUFV2 AZI2 SMAD3 SLC30A7 NABP1 DNAJC12 CYBB SELE SDCBP GEM NR4A3 EFNA1 NR4A2 TMEM2 CHMP2B ACBD3 DOCK4 GOLT1B WWC1 RASEF SLC2A3 PLAU SLC2A6 LTBP2 NR4A1 TGM2 RASGRP1 RGS2 UBD PMAIP1 MKKS TIPARP SRGN HSPA5 LAMB3 IRF2BP2 NFKBIZ NAV3 TNIP1 TGFBR1 ETV6 NFKBIB NFKBIA IRF1 IL6 IL8 NFKBIE NFKBID NNMT B4GALT1 DNAH2 BCL2A1 TNFAIP3 CXCL2 TNFAIP2 CXCL1 PLD1 CXCL3 CHD2 CXCL5 EMG1 HRH1 IRAK2 NRIP1 MFSD1 CA8 SNAPC1 FGA KDM6B FGB WTAP FGG PDE4D TPBG FNDC3A FNDC3B PLAUR SOD2 GREM1 RPIA PNKD NPHS1 DDIT4 TBC1D7 HKDC1 SPRY4 NAA15 DDIT3 KRAS TRIB1 KDM3A STEAP4 USP12 ZNF292 RB1CC1 RND1 OGFRL1 EVA1C SFR1 KYNU TDG MAPK6 SARS-CoV-2 Mock v DMSO Organoids GSE154613 down GLYCTK DKK1 SYTL5 BTBD11 UPB1 TPBGL GRIN3A CPEB1 GPR160 CYP1A1 C2ORF72 LINC00643 HCN4 ADCY1 HPGD C5ORF4 ADARB2 ASAH1 SULT2A1 MXI1 SPOCK3 CREB3L3 FLRT2 ST3GAL6 SPOCK2 GPR157 GPR158 ABCA2 EDARADD ABCA4 MTHFR PBX3 PDZK1 ACE2 ABTB1 FASN KCNMA1 MSL3P1 FREM1 EZH1 ZNF132 HHLA2 TMEM97 LIPC LYPD6 SLC30A10 SLC6A4 EPB41L1 FAM19A2 LRAT PLCG2 ZBTB7C RHBDL1 ACE PAX6 FAM102A PRSS12 DUSP9 SUMF1 GOLGA2P5 MMP11 BHMT SLC7A8 SLC7A9 MMP17 RARB GAS2 ANKS4B GPR123 HOXD8 LOC283683 SH3BGRL2 LOC100132891 JARID2 SLC18A1 GPR113 PKLR WDR19 LOC100131691 WNT7B RNASE1 RNF125 F7 TOM1L2 AGBL5 GATM RNF128 AADAC UBE2V1 MYRF DSCAML1 CDKL1 SLC29A3 FABP1 ZNF333 LRRC17 TCF24 PELI3 STON1 FMN2 SLC8A3 SMPD3 LINC00617 NEFL CARNS1 METTL7A NEFM ANXA9 TMEM38B SLC17A4 MAP3K3 C3ORF80 USP6 DIO1 PLCL2 SEMA4G SLC9A4 SLC9A5 ERP27 ITGA11 OCA2 CD177 OSBP2 KANK2 DGKG CTNND2 LOC646903 FAM117A TUBB1 HR PXN-AS1 CASC1 CASC2 SLC9A2 KIAA0513 FRZB IYD RAB26 PIPOX GRB14 SH3BP5 STX3 ACSS2 PITX2 NKX6-1 KCNH2 SLC15A2 BNIP3L TNFRSF10D MAFB SCRT1 METTL24 KIAA1875 NPHP3-ACAD11 MAP3K15 SLC27A6 ANKRD34A OSBPL1A CSF1R PFKFB2 SLC26A3 ATP8A2 UPK2 LINC00261 C11ORF95 LOC100505817 FAM107B ARHGAP6 SLCO2B1 SALL1 RIMS4 LOC100270804 C1QTNF6 CNTNAP3B SRGAP3 BZRAP1 SLC38A3 RAB4A SYBU KL PRRT1 SLC14A2 HMGCS2 HTR1D DNMT3B CDC42BPG KCNJ16 KY G6PC2 SEZ6L C6ORF211 ZNF516 SERPINI1 VSTM2A KCNK3 CNTNAP3 C21ORF88 RASGRF1 ILDR2 GADL1 NREP RAP1GAP C1ORF158 ALAD ADAMTS18 UGT2A3 B4GALNT2 TPPP BCAS1 ZNF501 ZNF862 KCNH5 SRCIN1 KCNH6 UGT2B15 UGT1A1 SYT17 CABLES2 KCNK16 MCOLN3 MYO1A ASXL3 PKHD1L1 SMPDL3A SEC22C LCT UGT2B7 MYLK3 SYCP2 PPM1N CXXC5 CNNM1 ARRB1 ADAMTS2 LOC100129550 ATP7B CNNM3 BEND6 NCK2 ABP1 KRT1 PTPRN2 FLJ22184 ENTPD3 WDPCP ADHFE1 MTUS2 MYO7A UNC93A CYP39A1 PSG9 SFRP5 CTH ZG16 EPHA4 PFN4 STXBP1 PANK1 CERK IL21R ITLN2 AKD1 RBM26-AS1 AQP1 NTN4 FRAT1 PEG10 FAM63A TBL1Y RAB11FIP4 MIR4442 FMO9P IQSEC2 ARRDC4 RAB39B DDIT4L IQSEC1 ACADSB CMBL ANK1 BTD C7ORF41 DPCR1 MEP1A LOC100505783 ITM2A ATP6V1B1 SPON1 FOXE1 ARX TMTC4 LPAR4 AARD TSPAN7 LDLRAD1 NAALAD2 PDK4 HIATL2 GLUL TSPAN2 BBS2 FFAR1 TSC22D3 KLHL4 MSS51 MTSS1 AJAP1 VEGFA VAV3 LOC100505687 CCNG1 CLDN19 FAM20A RHOU IGSF9 PCSK2 SLC44A5 PTGDR2 SLC35F4 MAOB CAB39L TMPRSS4 STC1 HEPACAM2 FITM2 PCSK9 CROT PCSK6 PCSK5 LOC285074 SEC14L5 MAP6 ANKRD6 CTSE ASIC1 ZYG11A PACRG SCD5 AKR1C2 ANO1 PDP2 PER3 SGSM1 TTC8 NOV LOC100128750 LPPR5 APBA1 ZNF354A LPPR1 PNPLA3 AMIGO1 FAM21A PTGER2 DIRAS2 PTGER3 C7ORF13 CXCR7 SH3RF2 RBBP8NL ZFP14 CTNNA2 MGAT3 ANKMY1 PDGFRB SLX4IP GABRP SCARA3 CCDC154 APLP2 KLHL24 HS3ST4 GCK SCNN1G GPD1 FAM173B TMEM139 GSTA2 GSTA1 LOC100507547 YPEL1 MPHOSPH8 CCDC152 CHRNA2 FLJ46300 SLC1A1 ATP1A1 DNAJC28 AMOT NDRG1 PAK7 FRRS1L SPTSSB NXPH2 PAMR1 CCDC141 ZC3H10 SLC30A8 IDH1 PSAPL1 CASR LRRIQ3 SYT2 EPHX1 TTC33 EPHX2 SLC30A2 NAT1 TMEM231 GEM ALDH3A2 GPER CDHR1 TMEM119 CDH12 COL21A1 MATN2 COL6A6 CDH17 CDH18 GNAZ FGFR3 VIL1 FGFR2 CCDC121 AMHR2 AMY2B PLAT PKD1P1 PLCXD3 RGS6 LOC100506343 PDZD3 DBIL5P CDH22 ALDH3B1 ZNF385D PAIP2B LOC338758 ZNF32-AS2 SH3GL2 ABCC2 ABCC8 SSTR1 SSTR2 SSTR3 MMRN1 GNAO1 LOC100133331 SCN4B C14ORF37 ATP13A4 FBP2 FAN1 IDI1 FBN3 PZP NCAM1 ALOX15 DDX43 SLC40A1 DPP4 CA2 DBT C17ORF103 MFSD4 USP30 LGI1 DCC CCDC176 DAPK1 LGI3 ANXA13 OPRK1 FAM155B SBK1 LMX1B CLDN9 PLA2G10 IGDCC3 ALDH1A2 FAM131B MST1P2 HCN2 SNED1 RERG LAMA3 LDB1 PKD1L2 LAMA1 HMGCR ACVR1C FAM179A CLN8 SH3YL1 FAM154B OGDHL HEPH VSIG1 SC5DL SARS-CoV-2 Mock v DMSO Organoids GSE154613 up CDK18 STARD5 MX1 MX2 EVA1A GTPBP2 PSMB9 SDPR RBCK1 HCP5 OPTN ATF3 SAMD9 SERPINE1 DLL1 ASCL1 RNF114 APOL6 IFNL1 MUC1 GTPBP1 IFNL3 IFNL2 STOM GBP1 APOL2 GBP3 HES4 APOL1 GBP2 SAMD11 GBP5 EPSTI1 APOL3 GBP4 BATF2 MASTL MOV10 FOSL1 IL22RA1 PTP4A3 EHD4 PLSCR1 SERPING1 PSME2 PRKD2 CFB CFI CFH CDCA5 BCL10 LOC100506190 TAPBPL LYPD5 SAMSN1 C2 HPX C3 RNF213 NUB1 ZC3H12A TDO2 CCRN4L NKX3-1 JUNB IER5 IER3 DUSP5 C5ORF56 PNPT1 GSDMB JUN PHF11 CCL20 NFAM1 TACR1 TMEM173 CP LYZ C6ORF62 TMC5 VWA5A BHLHE40 LOC389791 IL18BP SLC18B1 KCNC2 SERPINA11 ZC3HAV1 AEBP1 THY1 TMEM163 KIAA0040 LRSAM1 LRRC32 LDHA TRIM5 TRIM6 CASP10 TEAD4 ZNF101 SERPINB2 IFNGR1 STAT1 SERPINB1 STAT2 FOS TMEM62 SMTNL1 LOC339535 PTAFR OGFR TMEM140 IFIH1 PSMB8 NAMPT GCNT3 JAK3 KRTAP2-3 OLR1 IKBKE LOC388692 SEMA4B ATHL1 TOR1B CKM TAP2 TAP1 AGT TICAM1 MOB3C CDC25C CXCL10 CXCL11 SLCO2A1 S100A7 S100A9 CSF1 PROS1 PPP1R15A TNF ATP10A NPAS2 PAPSS2 RNF31 LAMP5 BCL2L14 LAPTM4B ZFP36 CDH3 RNF19B LAMP3 GRAP2 MAP3K8 SLC16A6 MAP3K6 SLC15A3 FAM26E CISH TRAF1 UNQ6494 NFKB2 RCAN1 MAFF MYD88 KIFC3 TROAP XAF1 SP140L BIRC3 RAB3C CD274 EXOC3L4 CNP CREM FGF1 PTOV1-AS1 S100A7A C6ORF222 GLIPR1 TRIM69 KCNJ5 GLYATL2 GLYATL1 ITGA5 DTX3L EIF2AK2 ITGA3 KCNJ15 CFLAR LOC145837 NRG3 TNFRSF1A FCGR2A BCL3 MTFR2 KCNK1 NLGN2 WHAMM GMPR NLRC5 DRAM1 P2RY6 ORC1 C10ORF10 STYK1 PLEKHG7 ERAP2 KLF4 DNAJA1 HAND1 MAB21L2 TXNIP RAB19 DTL TRIM38 PIK3AP1 C1R MDGA1 UNC93B1 C1S ECE1 DDX60L PIK3CD PPM1K THSD1 SQRDL TNFSF13B SLC25A28 CACNG8 CCL7 DHX58 CCL5 CCL4 TRIM25 CCL3 TRIM26 CCL2 FBXO6 TRIM21 TRIM22 SP110 RSAD2 EBF4 PPA1 PLEKHA4 PML GBP1P1 HMSD LAP3 NEURL3 IFI27 TRIM14 ALPK2 IFITM2 IFITM3 FGL1 IFITM1 SP100 TRANK1 AQP3 UBE2L6 PSMB10 HERC6 HERC5 NUAK2 IFI16 FLT3LG NIPAL4 MTHFD1L B2M HABP2 N4BP1 EGR1 APOBEC3D RABGAP1L APOBEC3F XBP1 APOBEC3G PLA2G4C TNFSF14 GADD45G C8ORF4 HLA-B OVOL1 HLA-E IFI44 HLA-F PARP14 SNHG16 PARP12 VNN1 PARP10 VNN2 VNN3 CFTR IFI35 IFIT5 IFIT2 IFIT1 IFI30 ICAM1 IFIT3 MT2A HELZ2 NUDCD1 SOX9 TNFSF10 IL12A A2M LGALS9 TNS4 STAT5A C17ORF67 EDN1 WARS IL15 BTN3A2 BTN3A1 IL16 NCOA7 NMI KRT14 LIF PDCD1LG2 BTN3A3 BST2 IL1B CEACAM1 THEMIS2 CEACAM7 NME8 KRT15 TLR3 IL18R1 CSRNP1 SPTBN5 REG3A CD40 SDC4 C2CD4A KLK6 SECTM1 C2CD4B KRT23 CCBP2 SOCS3 SBNO2 DUOX2 SOCS1 CLEC7A SPRR2A FAM46A FTSJD2 PODN PARP8 PARP9 SH3RF3 EPGN B3GNT7 SAA2 CMPK2 TRIP13 SAA1 CD47 CD44 CXCR4 DMBT1 IFNB1 RAC2 LMO2 HSD3B7 IL4R HRASLS2 RARRES3 SHISA5 SPINK1 VCAM1 IFI44L ZNFX1 AXL C20ORF118 FAP RELL1 CD68 TYMP CHRNA1 CHRNA3 ITPRIP ODF3B RGS16 IFI6 SAMD9L RELB KRT6A NT5E C1RL S1PR2 RGS20 AZI2 TGIF2 CARD11 MGAM DDX58 DNAJC12 KRT34 ISG15 TDRD7 ISG20 CARD16 CHMP5 LGALS3BP KIAA1199 PLAU RASGRP3 ETS2 DAPP1 DDX60 TGM2 UBD MUC13 PMAIP1 MLKL CYP2J2 MMP1 NFKBIZ SEPT1 OAS1 TNIP1 MMP9 TAPBP ETV6 ETV7 NFKBIA LOC100507463 IRF1 IL7 IL6 ELF3 OAS2 IL8 OAS3 IRF2 IRF8 IRF9 IRF7 CHI3L1 NNMT CXCL9 UBA7 TNFAIP3 CXCL2 TNFAIP2 CXCL1 NT5C3 ADAR CXCL3 CXCL6 CXCL5 CASP8 DNPEP IRAK2 CASP7 CASP4 GMPPB AOX1 GGACT CASP1 RBM11 WNT4 FGA RHBDF2 FGB IL15RA DAPK2 FGG PTGIR C4ORF26 PLAUR SOD2 AIM2 HSH2D NPHS1 C19ORF66 RBM43 PTX3 RTP4 MVP RND3 USP18 OASL RND1 SAMHD1 GRM4 SPRED3 GNA15 CLMN KYNU ABCD1 CYTH1 Untreated v SARS-CoV-2 Caco2 4h polyA GSE148729 down HEXIM2 CDK19 C5ORF15 GLYCTK CADM1 ZFYVE26 KIAA1217 DEPDC1B BMT2 CYP1A1 ASB8 NHLRC3 ALG10B C2ORF72 ASF1B ZNF395 DCAF8 DPYSL2 UGP2 WDR72 DPYSL3 CREB3L2 SNX27 PRSS8 HOXA3 EPSTI1 SAMD12 FZD2 CHST9 CREBBP JUND FZD4 FZD5 TYSND1 NR2F2 PDZK1 HDHD3 NR2F6 PBX1 SLC6A6 BCR C12ORF49 UCK1 TDP2 HBP1 GNE PRR15 HHLA2 DIS3L GATA6 PHYHIPL XPC LYPD6 RNF213 HOXC6 PIP5K1B ZNF248 PROM1 SLC19A3 ZNF362 GABRA4 PRSS16 NFATC2 TET1 NSUN7 SAMD4A FAM126A LRRC20 TMEM37 FAM222A RARB PXMP4 RNF141 MOCS1 TMEM106B YTHDC1 ABHD4 SEL1L TRIM2 SULT1C2 MECOM TTPA CIC KAT14 CDKL5 MBNL3 SLC2A11 G0S2 NMNAT3 SYNJ2BP MAP1A TOM1L2 PELI1 LGR5 MSRB1 SMTNL2 OAT CDKN1B PHLPP1 RARG GCNT1 ADAM22 PHEX RECQL5 UBL3 CKB NKX1-2 NUDT18 CHML BRD8 OLR1 MYLIP MAP3K1 PLXNC1 AGL IPMK SKIDA1 TICAM2 EMSY PNRC1 CDC25C FOXP1 LRFN1 ZNF439 PKP4 PHIP AJUBA SLC25A36 GTF2I ZNF552 RNF32 PUS10 RASL11A FAM117A C1ORF115 FGD3 TCEAL9 OARD1 UBN2 CFL2 PITX2 NEK9 SEMA6A TIA1 PCYT2 FRMD4B ESRRG FOXN3 LRRC45 ARL17A NDC80 RCAN1 FBXO30 ARMCX3 SMO SLCO1A2 CDC42EP3 PCYOX1 BCAT1 MDM1 ZNF652 KMT2E SLC26A2 ATP8A1 KMT2A RTKN2 RORA TM7SF2 EDC3 CDC14B RHOBTB2 TM7SF3 GLIS3 SLCO2B1 SESN1 C1QTNF3 MPC2 SESN3 NEK2 CEP350 AP5S1 BMF GYG2 COA5 DGCR2 RFC4 PPP1R12B KCNJ8 SETDB2 PLCH1 EIF2AK2 TNFRSF19 MACC1 KCNJ16 PTPN14 BICC1 BCL9 DAB2 CDK6 SP3 ZNF519 SP8 TNRC6B SERINC5 SOS1 DRICH1 CNTNAP2 CCDC25 HMMR DUSP16 ITPR1 AP5M1 ALAD P2RY1 UGT2A3 LBR B4GALNT2 SLC37A4 MAGI1 SMIM14 PLA2G12B PLEKHG6 SPAG5 CABLES1 LYSMD3 CABLES2 FOXJ1 KIAA0232 SORL1 TBX4 TPD52L1 ASPM PPM1B TXNIP RAB17 NPIPB9 SLC25A12 NECTIN3 CEBPA PIWIL2 PLEKHH3 SRC CEBPD SEMA3C SYNE1 ZBTB44 PIK3C2B TTN CXXC5 PPM1H DCAF16 REPIN1 ZNF608 LRRC8D RSBN1L UNKL TRIM24 TMEM52B ARL15 TMEM170B MAPK14 FRAS1 NEURL3 KIF20A ZNF711 UHRF1BP1 EPHA4 AMER3 LRP2 PANK1 UMAD1 SLC46A1 AKAP9 LRP4 PPP1R3B AKAP7 AKAP5 NSL1 NTN4 ZNF703 DAG1 SEPHS2 TRMT1L SMLR1 SLC11A2 GDF1 SYNRG RASSF8 AMMECR1 HNF1B OVOL1 CNKSR3 HNF1A GOLGB1 SDC2 INTS8 RCOR3 GRB7 CFTR RGL1 TMTC3 IFIT2 ZBTB4 SOX2 CYP2R1 NAALAD2 ZBED3 ZBED1 CEP192 TRPM7 NADK2 TNS3 SOX6 SKP2 NCOA2 CCDC117 NCOA7 TFEC GAB1 KLHL5 VAV3 NR5A2 RBM12B KITLG ID2 CCNG1 DEPDC1 PDZRN3 RHOU SLC35E2B TRAM2 TRAM1 CITED2 KIF11 SLC44A3 CAB39L CETN3 TMPRSS2 FITM2 KIF12 CROT LIAS TOR1AIP2 TVP23C-CDRT4 NEU4 ZMYM2 ZMYM3 HINT3 SOCS6 PRMT7 MPP5 GBF1 SORBS1 AKR1C3 SORBS2 MPP7 ALDH5A1 NOL4L KIF26B TPST1 TRIP11 SLC22A23 DCP2 FOXA2 NRP2 FOXA1 PAPLN N4BP2L2 NUCKS1 SIPA1L3 SH3RF2 XPO1 RBBP8NL SPTLC3 CREG2 SOSTDC1 FILIP1L CDX2 CACHD1 KLHDC2 KLHL22 TRPV3 PPP4R3B LIFR ARHGAP28 MID1 ARHGAP24 MYCN COL5A2 BUB1B AMOTL1 PRR15L PDE7A KLB SLC1A1 ARID4A SLC1A3 AURKA PRUNE1 AMOT GALNT10 TMEM245 RXRA TMEM129 DENND5B ARHGEF40 CCDC141 PAK6 IDH1 SMAD5 PCYT1B ACBD5 C2ORF15 ARHGEF17 ARID5B DDX52 HELZ DNAJC15 SMAD7 SMAD6 ACSF2 EFNA1 ADGRF4 AMACR TCF4 MFGE8 FGFR2 ATP6V1A PKDCC CCDC127 WWC2 JADE1 KLHL13 SEPSECS GATAD1 RGS3 PPIP5K2 ALDH3B1 UBD SVEP1 PDZD8 PSPH ANKZF1 VDR GALNT6 KDM4C CBX6 ABCC9 ABCC6 LIMK2 AXIN2 NAV2 BMP4 ELF1 AC011043.1 BMP2 ELF3 HOOK3 B4GAT1 IRF8 SOWAHB FAM72C CHD6 EHHADH PIK3R3 DTX4 HMGB2 SLC40A1 ARHGEF10L IRF2BPL DBT ERBB3 TMEM30A DAPK1 ARID1A FAM168A LMBRD2 TBC1D4 IGDCC3 CHDH GALM KRAS RBM47 PRR5 NXN C4ORF19 C2ORF68 EHMT2 LAMA1 THBS1 PPP2R2B CLCN4 NR3C1 ACVR1B UFL1 PCED1B SAP30L CAMK2G BUB1 DLEU7 Untreated v SARS-CoV-2 Caco2 4h polyA GSE148729 up WSB2 AFAP1 CD3EAP DKK1 GTPBP4 L1CAM CAPN15 MTAP MTHFD2 POLR3D CD9 VIM ORAI2 HNRNPF PLCD3 CHIC2 SERPINE1 CRABP2 ARPC5L CLDN2 UACA MYC S100A14 STOM S100A16 UBASH3B ST3GAL1 HES4 ST3GAL2 S100A11 SAMD5 ZBTB7A JAG1 KLF13 PHC2 PRKCD PLK3 PLK2 KLF10 NR1D1 BAZ1A VPS37B KLF16 EIF1 EHD1 FA2H FERMT1 FOSL1 FAM160A2 FERMT2 EHD4 SETX FASN NOSTRIN SNAI1 CDC42SE1 PLEK2 BCL10 WDR43 PPFIBP1 GJA1 EPB41L1 AP1S3 IER2 SFN JUNB IER3 DUSP5 NSUN2 DUSP6 DUSP4 DUSP2 CCL20 EMP1 TMEM43 TMC6 TUBB2A GNL2 DUSP7 DCBLD2 SLC7A5 GPRC5A INF2 MMP15 GPRC5B SLCO4A1 AGO2 CLCF1 RNF145 TINAGL1 PEA15 LITAF RASAL2 AREG SLC7A1 SHB HLCS TRIM8 SHH RHPN2 SH3BGRL3 TIMP2 GPR39 ELOVL1 SERPINB2 IFNGR1 NDE1 FOS AEN F3 CLIP2 RNF126 DHRS9 MYBBP1A RNF128 PPARG PLIN3 SMAGP ARF6 ZNF697 LAD1 CDKN1A OGFR FMN1 FGFRL1 PRSS22 PTGS2 LFNG FOXQ1 TUBA1C MPRIP GCNT3 RRP12 SLC17A9 GPAT3 BRD9 RNF44 SEMA4B PHLDA1 TLE3 MITF HNRNPAB C6ORF141 LRCH1 LRFN4 SKI TRABD2A ZYX ZNF316 SLC25A32 TNIK SRSF7 FKBP5 PTPN3 NIP7 PPP1R15A PLOD3 AHR EGFR C6ORF132 BZW1 SLC9A2 FGD6 ZFP36 TUBB6 ITPRIPL2 RNF19B TUBB3 FLNA HAS3 FLNB FLNC GRB10 SLC16A3 KPNA4 PHLDA2 KRTAP3-1 LDLR SH2B3 SLC38A1 F2R IGFBP4 OSBPL3 TNFRSF10D TNFRSF10B TNFRSF10A NFKB2 MFHAS1 MAFF FRMD6 KIFC3 DRAP1 BCL2L1 ESAM CDC42EP1 SPIRE1 LHX6 MAFK MAP3K14 YRDC BIRC3 PFKFB3 RAB3B IRS1 CBFB NAB2 FAM107B IPO7 STK10 PMEPA1 ABL2 PIM3 TMSB10 SH2D3A ITGA3 ITGA2 TXNRD1 CFLAR MICAL3 PTPN12 CDC42BPB TNFRSF1A DBNDD1 TNFRSF21 ARL4C NES ITGA6 TOP1 KCNK5 BCAR1 SEH1L FBLIM1 RASGRF2 C3ORF52 ITPR3 BICD1 RAP1GAP SAV1 KDSR RALGDS CEP170 MCL1 UBE2F-SCLY TBX2 PLEKHG2 PLEKHG3 RNF24 SMOX LRRC8A MYO10 KLF5 MYO1E RAB10 KLF6 POLR1E NOP56 NPIPB6 PFKP ITGB1 SRXN1 ITGB4 FHL2 LUZP1 FHL3 PPP1R13L PCDH7 NPIPA2 UPP1 ADAMTS9 ARL5B PCDH1 SLC25A25 IFRD1 RUNX1 KRT8 ACSL5 TM4SF1 MALL TRIM15 EPHA2 EPHA1 RIN1 EIF5A2 AQP3 ANTXR2 IL27RA BAIAP2L1 PARD6B RILP NUMBL N4BP3 RFFL EGR1 EGR4 PAQR5 GADD45B GADD45A CSNK1E VASP NCEH1 CDCP1 CYP2S1 WNK4 SPATS2L VGLL3 EZR PPP1R18 MTCL1 PITPNB PPAN PWP2 MICAL2 REG4 SOX9 CEP170B SOX8 TNS4 IL11 EDN1 TNFRSF12A LIF RHOF RHOB CEACAM1 KRT19 ID1 KRT18 CEACAM6 CEACAM5 ARHGEF2 SGK1 CSRNP1 DOT1L TMEM185B FAM43A SDC4 NMD3 SLC35F2 TNFRSF11B SLC7A11 SOCS3 RAP1B SOCS2 MAP1LC3B ANKRD1 MLX SNX9 SPTBN1 LYAR MPP3 TOMM34 TJP2 F2RL1 EPPK1 ERRFI1 GREB1L SLC20A1 GNAI1 SH3RF1 ARNTL2 PPP2CB AKAP12 ENC1 SERTAD1 CD59 LCMT2 ANKRD13B MFSD2A MAP4K4 CD55 TGFB1 PDGFRA IL4R GDF15 ARHGAP29 ARID3B LMO7 KLHL21 AXL EHBP1L1 GPRIN1 PMP22 MYADM LRP10 YAP1 INPP1 GDA ZFP36L1 ASAP2 LMNA KRT6A EFNB2 SH3TC1 ARHGAP42 CCND1 ASAP1 GPC1 KIF5B RELT FGF23 CARD10 SMAD3 CARD11 PSAPL1 ARHGEF16 ARHGEF18 MRGBP EFNA2 GCLC CAPRIN2 TRNP1 GEMIN5 TCF7 CHMP2B FGFR1 MIDN RTKN DOCK5 DYRK2 LRRFIP1 SLC2A1 ACTG1 ETS1 ETS2 PLCXD1 ARHGAP23 ARHGAP21 RGS2 ADGRG6 SACS USP53 MLKL MMP1 HSPA8 SMURF1 CAV2 MMP3 CAV1 LRWD1 AXIN1 HMGA1 ARAP2 URB2 NAV3 RASA2 RASA3 CMTM3 PLEC USP36 CXCL8 YWHAG GPSM1 TNFAIP8 PLD6 TNFAIP3 LAMC2 STK4 HK2 TMEM201 FAM83G FAM83F MFSD6 MYEOV KDM6B PDLIM7 RBM38 SPEN FNDC3B PLAUR KCTD5 YWHAZ SPATA2L KCTD9 EEPD1 CLDN4 GREM1 LTBR VGF TBC1D8 HKDC1 SPRY4 SPRY2 B4GALT5 TRIB1 TMEM41B THRB SOWAHC DDX21 YBX3 RND3 SLC4A7 SPRED1 CLMP MAT2A PRRG3 EPS8L1 DIP2B EPS8L3 LRIG3 NIFK Untreated v SARS-CoV-2 Calu-3 4h totalRNA GSE148729 down ISY1-RAB43 MX1 BAD ZFYVE26 PSMB9 SCAMP3 EID1 CT476828.5 MEX3B MARCKS CYP1A1 VPS28 ATF2 TES PGAP3 MAML2 AP5Z1 SZRD1 RNF5 ASAH1 MT-ND1 CYP1B1 RABAC1 APOL2 GBP2 S100A11 FZD2 NAA50 JUND RPL41 CFAP52 PMM1 FIBCD1 STARD10 TMA7 MTHFS WDR54 PBX1 ACE2 GJB1 GIGYF1 ABTB1 VAMP8 PLSCR4 TCN1 SERPING1 LGMN PRR16 HOXB4 CTAGE8 FAT4 HBP1 CFB HLA-DRB1 TTYH3 HHLA2 ZNF493 SCOC SDR39U1 TAPBPL ARPP19 PRDX3 STMN1 NYNRIN NAPRT AGMO GJA9 SULT1A4 ZNF488 SRP9 NFATC4 TMEM42 JOSD2 LYZ CENPE MZT2B CENPF FXYD3 FXYD2 CCDC8 RARB HLA-DQB1 CENPQ ADGRL3 ANXA8L1 BTG1 ABHD4 TCP11L2 TK1 DLGAP3 PCMTD1 MBNL1 WDR18 MBNL2 CDKL5 MEF2C SLC2A12 CDKN2A STAT2 MBD3 PET100 NR1H2 DHRS1 RNASE1 TMEM60 BAAT PGM2L1 PRSS33 TMEM59 SPSB3 MS4A6A LAMTOR5 MSRB1 LGR4 SFTA2 CDKN1C RNASEK NDUFA13 PIGR PIGQ TUBA1A TMSB4X LMAN2 HLA-DMB FCGRT ING4 ENSA TMEM47 ANXA8 GCNT4 BRD8 HLA-DMA SLC17A4 SH3GLB2 CD164 PPAN-P2RY11 YIPF2 USP5 SKIDA1 MITF ZBTB10 AGT PNRC1 ABI1 FKBP8 AJUBA SNRPE DSC2 GHDC FKBP3 VTCN1 FAXC UBE2D3 SLC25A40 UBE2D1 ZBTB22 TCEAL1 CREBL2 FAM214A ZBTB20 RNFT2 LAPTM4A RIDA GBX2 MACROD1 SPP1 CIR1 PHLDA3 SEMA6A SLC38A2 TMEM132A BNIP3L ARPC5 NDC80 DUSP23 TFDP2 KIFC1 RCAN3 NPHP3-ACAD11 PIN1 RAD9A CALCOCO1 CLSTN3 GMNN IRS2 RNF181 EIF4EBP1 ARL2 PHB C1ORF210 SAT1 CORO1B ARHGAP4 HSPBP1 CYP2C18 MPC2 AMDHD2 C1QTNF6 SESN3 TOM1 BMF TMSB10 MAF1 SRGAP2 UNC45A GPX2 APAF1 INMT NDUFC2 ZNF75A MFAP2 BCL6 MGAM2 SERINC1 TMBIM6 MCM2 SERINC5 NDUFB7 ONECUT1 TREM1 MDK PSAP MB CAPZB CCDC85A SERF2 CCDC34 OVGP1 MARCKSL1 NDUFA7 UGT2B15 NDUFA5 TP53INP1 NDUFA2 SYT16 SYT15 ASPM MYO1F NAGK RAB10 ZACN RAB18 SMIM22 HDAC5 TRIM31 C1S CXXC4 HDAC9 PBXIP1 CECR2 MIEN1 AP1G2 SPDYE2 UBQLN2 UGT1A3 NPIPA7 CACNG4 UNKL C9ORF135 LRRN3 ARL14 TM4SF4 GOLPH3L AP1AR PEX13 MTUS1 CCT6B CCDC80 HIP1R HECA KYAT3 NBL1 APP IFITM2 WBP1 WBP2 IFITM1 CBLB CSN3 NTN4 HERC6 SNRPD2 APBB1 ZFPL1 RABGAP1L TMED9 HLA-C MIF RAB27B COMMD4 HLA-A COMMD1 HLA-B HLA-E HLA-F PARP14 STAG2 STAG3 CYSTM1 ITM2A CES3 GRB7 ITM2C APOBEC3C PTGFR BEX3 CT476828.21 CASZ1 NECAB1 NUMA1 CREBRF IFI35 WFDC2 IKZF2 DCUN1D1 GMCL1 SOX4 LGALS1 PDK4 TREX1 GLUL APOE TNFSF10 LGALS9 SIL1 TNS3 NCOA2 FOXD4 CDT1 BBS1 KLHL3 VAV3 PDZK1IP1 CLDN10 TPPP3 ENAM TECR CCNG1 AKR1B10 RHOU SLC44A4 TRAM1 CITED2 PTPRR CCDC103 TNFRSF11B KIF12 BRCA2 NEDD8 ZCCHC18 PCSK5 MAP1LC3A SMIM11B SNX3 SH3BGRL MAGT1 MIS18BP1 ANKRD2 FAM180B TPD52 ATP6V0E1 MME AKR1C3 SORBS2 PGRMC1 MIB2 DPY19L4 NBR1 SAA1 FAM171B RAMP1 ZDHHC1 GBA AKR1B1 DIRAS3 CAPG PTMS CRIP2 TRAK1 COX5B SPAG16 LILRA6 RBBP8NL SERP1 PGRMC2 OS9 NUSAP1 FILIP1L KLHDC3 CA11 LMO4 NPY1R NOSIP SHISA5 TJAP1 UBE2A KLHL24 MUC3A ARHGAP24 ARHGAP30 TMEM139 GPRIN2 PRR15L SLX1A OTUD1 YPEL5 ULBP2 GRINA ALDH16A1 YPEL3 CAPS HNRNPA1P48 NEXN IFI6 AMOT NDRG1 KLHL32 COX6A1 CLEC18A RAB40B ZNF85 GPC4 ROMO1 LRRIQ1 ARID5B CHCHD10 CYBA ISG15 SMAD6 ACSF2 AMACR DDAH2 FAM151B MUC20 FGF12 MXD4 FGFR2 ALG1L TRAPPC3L PKDCC ROGDI DPY30 SRP14 PLCXD3 CREBZF ZMAT2 UBB ZMAT5 UBD FLOT1 ACAA2 GGT1 ANKZF1 BCKDHB BCKDHA MMP7 CAV1 DTNBP1 LAMB2 OAS1 IQCK SHANK1 ELF3 NDUFS7 FAM72A MNS1 NAA38 ATP13A4 CUEDC2 COPE PSMD10 RTN4 HMGB2 HSPB1 SCIN ERBB3 TMEM189-UBE2V1 EYA1 DAPK1 DCXR THAP2 SGPP1 JSRP1 PIK3IP1 LNX1 DAAM1 PDE5A RTP4 PCDHGB6 ZNF292 RB1CC1 MSMO1 SLC22A18AS CRYZ C19ORF73 MAT2B POLD1 ARHGDIB PALMD PRRG2 Untreated v SARS-CoV-2 Calu-3 4h totalRNA GSE148729 up CHGB B3GALNT1 ZNF283 WDR75 HPCAL1 CD3EAP DKK1 GTPBP4 MTHFD2 NUP98 POLR3G RPL22L1 ASB1 ZNF275 ANKLE2 RPL11 ARPC5L MSANTD4 IFNL1 IFNL2 FAM156A CNST CHST10 CAPNS1 MYC TGS1 UBASH3B ST3GAL1 GPR157 PPARGC1B AFAP1L1 JAG1 PHC2 PLK3 PRKCE MARS2 PHKA1 FLI1 KLF16 C12ORF56 FERMT1 FOSL1 FERMT2 EHD4 COMMD3-BMI1 DZIP1 ZNF257 CHST3 MCPH1 PADI1 CDC42SE1 GLDC ZNF131 PLEK2 CEP85L WDR43 HIF1A ANKRD20A1 PCNX2 BLOC1S2 ALKBH2 ZNF280C LRAT IER5 IER3 POU5F1B ZNF365 DUSP5 DUSP6 UPF1 JUN DUSP4 RIPK4 KCNB1 CCL20 SEC16A EMP1 TRMT5 TMC7 TYW1B JOSD1 DCBLD1 DUSP7 DCBLD2 SLC7A6 MBLAC2 AGO2 BHLHE40 ZNF239 GTF2H2C RAPGEF6 ZNF112 ZNF595 ZNF473 KCNC4 DENND1A AREG HSPE1-MOB4 ZNF41 RNF152 ZNF589 RPS27A ZNF587 ZNF586 ZNF343 DFFB SERPINB2 ZNF460 IFNGR2 ANKHD1-EIF4EBP3 AEN RRP1B F3 BIVM-ERCC5 GTF2H4 ARCN1 ADAM19 DHRS9 FABP5 MAP1B ANGPTL4 USO1 ANKRD44 HBEGF SRFBP1 ZNF696 ZNF573 CDKN1A GCNT1 SERPINB10 TCF23 ALMS1 JPH3 NAMPT C18ORF25 RIOK2 GPAT3 ZNF202 ZNF562 PPIL1 SEMA4B PHLDA1 ZNF561 MREG CD160 FAM227A LRCH1 RIMBP3 PKP2 SLC25A30 ZNF316 SLC25A33 SLC25A32 SRSF7 FKBP5 SLC25A37 PTPN3 ERVFRD-1 ODC1 ZBTB24 CXCL14 EGFR NPAS2 NDUFC2-KCTD14 AP3M2 C1ORF109 HAS3 EEF2KMT PHLDA2 ZNF302 SH2B3 MAP2K4 MAP2K3 NOP16 ODF2 IGFBP4 FST DYRK1B TNFRSF10D TNFRSF10B TNFRSF10A LSM6 LY75-CD302 FRMD6 SYNJ2 CDC42EP2 ZNF778 PPEF2 YRDC NRSN1 PFKFB3 CEMIP CD274 SLC26A2 ISG20L2 RAB43 SCMH1 CNTNAP3B ZNF649 PLXNA2 EFHD2 EIF3CL ZNF525 MBP ATCAY SEMA7A CDRT4 TRIT1 KCNJ11 ITGA2 EIF2AK4 OSGIN1 FOXL1 RABGGTB ZFP69 ITGAE LANCL3 ETF1 CEBPZ ITGA6 CDRT1 SEH1L CRYBG3 IPPK SHC4 RASGRF2 ST20-MTHFS ITPR3 UAP1 BICD1 ADAMTS15 MDN1 CEP170 MCL1 RNF24 ADSL MYO10 KLF4 QTRT2 TSPAN14 POLR1B NPIPB5 KCTD14 ZNF614 KCTD13 NPIPB9 NOP56 TPT1 MAK16 NXT1 SRXN1 WDR3 FHL3 DNHD1 ECE1 STK32A PSD3 BAHD1 ZNF607 POLR2D NPIPA1 CARNMT1 BEND3 ZNF843 ADAMTS9 NPIPA8 ZNF600 VSTM4 MGA EREG AFG3L2 TRIM15 CCM2 NEIL2 EPHA2 RIN1 RSC1A1 EIF5A2 RGPD8 ANTXR2 AMER1 BAIAP2L1 PNP E2F3 SUSD4 EGR1 CMC4 ST8SIA3 SIAH2 SLC6A14 SUCO IFFO2 PUM3 RPS29 CDCP1 RPL27A INTS5 NDUFAF2 LTV1 PWP1 MACF1 PPP1R18 FAM89A PITPNB THUMPD3 LPAR2 LGALSL GSPT2 MICAL2 PPAT TNS4 IL11 ZNF587B TMEM150C SIGLEC11 LIF OTUD6B RHOF RGMB PTPRE NBPF19 ZBTB9 IL1B KRT18 FUBP3 CAMK4 ARHGEF2 STK40 TLR4 RAB7B CSRNP1 TMEM185B FAM43A C2CD2 PAK1IP1 STC1 TGFA ADRB2 SOCS3 SMIM11A NEU3 SEC14L2 MLX BCL2L2-PABPN1 CDV3 PRMT3 NCR3LG1 DOHH SLC35G2 MPP6 NLE1 PDP2 CYP2W1 DLC1 F2RL1 ATP6V0D2 TSSK3 ERRFI1 NRP1 NRP2 MAMLD1 MRPS34 SLC20A1 PRICKLE1 HCCS CAMKK1 AKAP12 XPO5 DNER ENC1 CXCR4 TBC1D30 SERTAD1 IFNB1 ENPP6 MAP4K4 IL4R MORC4 ARID3A ARID3B PUS7 ARHGAP26 ERN1 FAM161A AMOTL1 MYADM POC1B-GALNT4 RAI14 OTUD4 LRP12 INPP1 GALNT14 GEMIN4 ZNF8 NT5E TATDN2 SH3TC1 PRR14L CCND1 FGF23 CARD10 UTP15 SPDYE11 TBCCD1 INHBA CTPS1 DDX51 SSH1 DNMBP CT83 CAPRIN2 MAP7D3 GEMIN5 TAF4B CDHR5 CREB5 SRP19 DDX5 ICE1 POGK KLHL18 TACO1 PLAU TTF2 ETS1 SEL1L3 ETS2 RGS2 SACS UTP20 MLKL TIPARP ABCC3 MMP1 SMURF1 HMGA2 FAM86B1 URB2 DDX31 GPCPD1 RASA1 IFNE SPDYE2B ARL2BP MAP6D1 PDE3A PLEC USP36 CXCL8 C2ORF42 GSK3A NOP2 TNFAIP3 CXCL2 CHD1 HK2 U2AF1L5 SPECC1L-ADORA2A TMEM201 FAM83G PDLIM4 FUT8 CALB2 GRK5 UBE2Q1 FAM83A LONRF2 LONRF3 RBM38 POLN PLAUR RPIA ABHD17C GFOD1 DDIT4 TAF7 VDAC1 SPRY1 PTX3 CCDC174 B4GALT5 TRIB1 OTUB2 ZNF177 SOWAHC LAMA3 DDX21 ATP2A2 THBS1 RABEPK CBL CLCN2 SLC4A7 MAT2A GNA12 CHSY1 BMS1 DIP2B NOS1 NIFK Untreated v SARS-CoV-2 Calu-3 s1 4h polyA GSE148729 down SND1 CDK19 MX1 DEK ZFYVE26 ATG14 RNF103 KIAA1217 DEPDC1B MARCKS NHLRC3 ATF2 SAMD9 TESK2 NCAPG ZFYVE1 DCAF6 RNF5 ASAH1 TFPI DCAF8 DPYSL2 FBXL20 MXI1 CYP1B1 APOL2 NCSTN APOL1 GBP2 FZD2 CHST9 PLK4 GABARAPL1 NR1D2 PBX1 AR ACE2 GJB1 GIGYF1 ABTB1 PPFIBP2 VAMP8 PLSCR1 PLSCR4 TCN1 PKIA PSME2 SERPING1 PRR16 FAT4 HBP1 HLA-DRB3 CFB HLA-DRB1 CDC42SE2 WDR48 CFI CDCA8 GNS ARPP19 LIPA SMC2 WDR44 ALCAM EPB41L2 STMN1 NYNRIN TCF19 ANXA1 ANXA2 GSTM1 CARD6 LYZ C6ORF62 SIRT2 CENPE APBB1IP CENPF CYLD GPRC5B AGO4 CENPI FXYD2 RARB HLA-DQB1 PIGK ADGRL2 PLEKHM3 PIGN SERPINA3 BTG1 ABHD4 CHURC1-FNTB TRIM2 IQGAP3 LRRC31 GLG1 MECOM MYO6 TCP11L2 TIMP2 CEP55 PCMTD1 DLGAP5 ATAD2 CDKN2C CDKL5 MEF2C SLC2A12 ODAM STAT1 STAT2 WDR19 ELP4 ADAM10 ELP6 PTGR1 BAAT DDB2 TMEM59 CLIP4 HADHB ZNF33A BDH2 PSMA2 NFIB NCAPD2 LGR4 GRN PIGR STON1 TUBA1A TMSB4X PSMB8 HLA-DMB FCGRT ADAM28 UBL3 ENSA TMEM47 GPNMB METTL7A ANXA8 GCNT4 MPV17 AGR2 RICTOR BRD8 HLA-DMA PAIP2 MAP3K3 CD164 CRBN RPS9 MITF AGT PNRC1 DCDC2 CDC25C MORF4L1 PDCD4 SNRPG DSC2 DSC3 UGT1A10 VTCN1 FOXO4 ARMCX1 FAM214A ZBTB20 HSP90B1 LAPTM4A CFL2 LAMP3 MACROD2 SPP1 ACSS1 SWAP70 SEMA6A SLC38A2 FBXO33 CYP4F12 NDC80 METTL25 TFDP2 KIFC1 GPR107 TPP1 RAB5B TEN1-CDK3 CALCOCO1 CLSTN3 GMNN INSIG2 FAM107B SAT1 TM7SF2 CYP2C18 GLIS3 RAB43 MPC2 NEK2 BMF RFC4 APAF1 EIF2AK2 WIPI2 CUL4B BCL6 ZNF519 MGAM2 CDK1 PIR DSG2 MTFR2 SERINC1 TMBIM6 MCM2 MCU SERINC5 HMMR MLLT3 CYP3A5 NPAT KLC4 ALAD TKFC PSAP FCHO2 FNIP2 FNIP1 DSP SMIM14 TRIQK OXR1 STYK1 DST NDUFA4 HAUS4 SYT15 PRC1 ASPM VPS41 CTDSP2 ZNF738 TRIM38 LEPROT UGT2B7 ARHGAP11B HDAC5 MDGA1 TRIM31 ZBTB44 PPM1K PIK3C2G PPM1L HDAC9 PBXIP1 HSD17B11 SYNE2 MTRF1 SGCE EXO1 ZNF608 SPDYE2 DCAF11 IL1R1 PLEKHA3 SLC12A2 ARL14 FBXO2 TM4SF4 BSDC1 GOLPH3L PLEKHA7 MTUS1 GSTZ1 SHTN1 GAREM1 LPAR6 XRN1 IFI27 HIP1R PPP1R3E ULK1 HECA KIF20B ALPK1 TMEM87A WBP1 IFITM1 PLEKHB1 NTN4 HERC6 E2F1 B2M RABGAP1L TMED9 TMEM50A BROX HLA-C RAB27B ANK3 HLA-B HNF1B LCA5L HLA-E PARP14 OCLN CWF19L2 SPATS2L ITM2A GRB7 ITM2C CFTR MAGED2 NUMA1 CREBRF JMJD1C IFI35 SESTD1 IKZF2 DCUN1D1 IFIT1 KLHDC7A TSPAN8 ARL6IP5 GLUL TNFSF10 ATP6V1C1 TNS3 VAV3 PDZK1IP1 ANLN FUBP1 CLDN16 CEACAM6 CCNG2 CCNG1 CALR SLU7 CD24 RHOU TENM3 SLC44A4 COX7C C2CD5 DTYMK CITED2 KIF11 TOP2A MOGAT1 SECTM1 KIF14 KRT23 TNFRSF11B CTSS DSN1 SMIM11B AUH SH3BGRL MAGT1 ATP6V0E1 SORT1 PNPLA8 MCCC1 AKR1C3 ERBIN SORBS2 LIMA1 PARP9 NBR1 TCEA3 CTAGE15 TACC1 GBA MKI67 NUCKS1 CRIP2 NUDT7 PGRMC2 PCM1 OS9 EPG5 KANSL1L NUSAP1 LCMT2 KLHDC3 GABRP CD74 LMO4 APLP2 KLHDC2 GOLGA6L4 KLHL24 IFI44L EEF1A1 TMEM139 YPEL1 PRR15L YPEL5 POC1B-GALNT4 CAPS CCDC150 NEXN ARID4B IFI6 PSORS1C1 AMOT TMEM123 TMEM245 MYH14 TBC1D15 FGF23 TCAF1 ARID5B ISG15 SDCBP ACSF2 KIF18A MUC20 MICU1 MXD4 FGFR2 WNT2B COPA CCDC125 ARHGEF28 PSEN1 SRP14 IGF1R DDX60 MYDGF CCNB2 NME1-NME2 KIF3C UBB COBLL1 UBD FDCSP GGT1 MMP7 CAV2 CAV1 SHROOM3 OAS1 IQCK GULP1 TAPBP PJA2 ELF1 ELF3 OAS2 MNS1 ATP13A4 GPSM2 ABCB1 HMGB3 LMNB1 CHD6 PIK3R3 SLC40A1 HMGB2 CHD2 CXCL6 DPP4 SCIN GMPPA ERBB3 CASP2 BLNK ECT2 MAN1A1 FAHD1 ATF7IP DAPK1 RRM1 TBC1D9 PPP2R3A TIAM2 PIK3IP1 DAAM1 PDE5A SSBP2 RBM47 PCDHGB7 C2ORF68 PALM3 ZNF292 RB1CC1 HMGCR RPS6KA5 CRYZ CYTH3 RMND5A MAT2B PRRG3 PALMD SAP30L BUB1 Untreated v SARS-CoV-2 Calu-3 s1 4h polyA GSE148729 up POLR2J2 WSB2 HAGHL WDR75 GATAD2A HPCAL1 CD3EAP DKK1 GTPBP4 CAPN15 MTAP MTHFD2 POLR3D POLR3E ARMC5 POLR3G RPL28 ASB1 MSANTD4 GPATCH4 MT-ND4 NXF1 NWD2 ZMIZ1 MYC UBASH3B HES1 ST3GAL1 PPARGC1B F8A1 JAG1 KLF13 PHC2 ZNF263 PLK3 MARS2 NR1D1 ZNF12 FAM136A KLF16 EHD1 FERMT1 FA2H BCR FOSL1 ABTB2 GJB3 FASN CTAGE9 SF1 CHST3 RRP8 CDC42SE1 SCHIP1 MT-ND4L WDR43 RAPH1 ELK1 ALKBH8 HIF1A RRP9 ELK3 ABR POM121C GRPEL1 ALKBH2 IER2 LRAT SFN JUNB IER3 DUSP5 LYN NSUN2 DUSP6 JUN DUSP4 DUSP1 DUSP2 ITPK1 CCL20 EMP1 TRMT5 DUSP7 DCBLD2 SLC7A5 LETM1 MBLAC2 FXYD5 RARA ZNF598 ZNF473 TINAGL1 KCNC4 PHF23 ADO AREG RRS1 MIOS C11ORF24 YTHDF1 SERPINB2 YTHDF2 ZNF581 IFNGR2 WNT7A AEN RRP1B F3 ADAM19 MYBBP1A ANGPTL4 PGAM5 HBEGF ZNF574 CDKN1A GRAMD4 CHKB-CPT1B KRI1 NKRF C18ORF25 RNF139 MPRIP RIOK1 RRP15 SLC17A9 GPAT3 ZNF202 SEMA4B PHLDA1 MAP1LC3B2 MOB3A MRTO4 LRFN4 ZYX ZNF316 SLC25A32 SRSF7 FKBP5 FKBP4 SLC25A37 DGKE NIP7 ODC1 PPP1R15A EGFR BZW2 NPAS2 BZW1 ABLIM3 HAS3 SLC25A44 EEF2KMT PHLDA2 ZNF786 LDLR SH2B3 SIAE ESRRA MAP2K3 NOP16 CISH IGFBP4 FST TNFRSF10D BET1L SYS1-DBNDD2 TNFRSF10B TNFRSF10A HPS6 NFKB2 ADRA2A ACLY FRMD6 KIFC3 FRMD8 SYNJ2 TRAF4 CDC42EP3 BCL2L1 CDC42EP2 CDC42EP1 YRDC PFKFB3 CD274 SLC26A2 NAB1 IPO4 ISG20L2 STK10 BAG3 ZNF408 PMEPA1 EFHD2 FBRSL1 PLXNA1 MBP SEMA7A TXNRD3 ITGA3 ITGA2 MUC5AC OSGIN1 FOXL1 CDK9 TNFRSF21 ARL4C ADORA2B ZNF639 ETF1 TRMT61A BCAR1 BCAR3 SHC3 BICD1 BICD2 C15ORF39 ADAMTS15 RDH13 DVL1 TRIM47 MCL1 COA7 PLEKHG3 SMOX MYO10 SLC25A19 TSPAN14 KLF6 POLR1B SYT12 POLR1C POLR1E ZACN NPIPB3 NOP56 MAK16 EIF4A3 MTFMT SEMA3A WDR1 FHL2 SRF FHL3 NOB1 SRM PPP1R13L PSD4 SLC25A22 LRRC8C CSK TNFSF12-TNFSF13 ADAMTS9 NPIPA7 IDH3A CDON IMP4 ENTPD6 NBEAL2 EREG TMCC1 CCDC86 CCM2 EPHA2 RIN1 ANTXR2 LRP8 AMER1 PNP BAIAP2L1 DHX30 BAIAP2L2 DHX34 DHX37 E2F3 E2F4 E2F5 EGR1 GTF2H2C 2 PAQR5 GADD45A ARRDC4 IFFO2 PUM3 CDCP1 SMTN TTLL12 NOL11 LTV1 MTRR MACF1 SLC45A3 FAM89A PPAN PWP2 GSPT2 RUSC1 MICAL2 INPP5F SOX9 CDR2 TSC22D1 LIF AMPD2 RHOF VEGFA PTPRE IL1B RPUSD1 KRT18 NAT10 ARHGEF2 SDE2 KBTBD8 STK40 TLR4 TMEM185B FOXC2 TNFRSF11A FAM43A CITED4 SDC4 PAK1IP1 STC1 TGFA AATF SOCS3 SMIM11A SOCS2 PPRC1 GNPNAT1 MLX QSOX2 PRMT6 CDV3 MPP6 TOMM34 PDP2 TPST2 PER2 XPOT DLC1 B3GNT5 F2RL1 ERRFI1 PTGER4 TOR4A TXLNG SLC20A1 PDCD2L SH3RF1 ARNTL2 AKAP12 XPO5 SERTAD2 ENC1 CXCR4 TBC1D30 XPO6 SERTAD1 METTL8 MFSD2A MAP4K4 ICOSLG NOM1 TGFB1 HS3ST1 IL4R DENND4B PUS1 UBE2F ARID3B ARHGAP27 ARHGAP26 KLHL21 DKC1 DOK7 UBE2O AMOTL1 PPIF MYADM RAI14 GEMIN4 SLC1A5 ASAP2 ARHGAP39 ATP2C2 NOL6 CMIP NT5E TATDN2 SH3TC1 CCND1 NDUFV3 CARD10 CARD11 UTP15 ARHGEF18 MSANTD3-TMEFF1 INHBA CTPS1 SSH1 DNMBP RCL1 CAPRIN2 GEMIN5 TCF7 FGFR1 NMUR2 CREB5 MIDN RTKN PXN POGK KLHL18 SLC2A1 ACTG1 PLAU PLAT ETS1 CAMSAP1 AMMECR1L TGM2 RGS2 SACS MLKL BCL9L A4GALT SBF1 BCKDHA TIPARP URGCP MMP1 SMURF1 HMGA2 FAM86B1 AXIN1 NAV1 URB2 DDX31 URB1 EPN2 RASA1 IL6 TMEM216 MAP6D1 PDE3A ATP13A3 CMTM3 PLEC GRSF1 R3HDM4 USP36 CXCL8 YWHAG NOP2 MAST3 TNFAIP3 CXCL2 CXCL3 CHD1 HK2 GRK2 TMEM201 PDLIM4 CALB2 SNAPC4 MYEOV LONRF2 KDM6B PDLIM7 RHBDF2 TIMM8A RBM38 PLAUR FAM131A PDE10A RPIA ABHD17C LTBR DDIT4 SPRY4 CXORF38 SPRY2 GCOM1 TRIB1 OTUB2 ZNF296 SOWAHC LAMA3 DDX21 THBS1 CLCN2 RPS6KA4 MAT2A GNA12 CHSY1 TDG BMS1 NIFK Untreated v SARS-CoV-2 H1299 4h polyA GSE148729 down CDK19 C2ORF74 SOX12 LRRC37A GTPBP2 SCD TMEM126B CDK10 ASF1A CGGBP1 MT-ND5 ZNF395 ADCY4 WDR62 SPG7 ZFYVE1 MT-ND4 TFPI UACA MT-ND2 DPYSL2 DCAF4 C19ORF54 AKT3 CYP1B1 EXPH5 FDFT1 KLF11 ACTL6A FZD7 BLOC1S5-TXNDC5 VPS13A PAFAH2 MSH5-SAPCD1 GIGYF1 HSPG2 MLLT10 ABTB1 SLC6A9 FASN PRKD1 NMT2 HOXB3 MT-CO3 HAMP HBP1 GNE GABARAP CDCA3 TRIO MT-ND4L MUS81 PRKDC SMC4 MYSM1 AAAS CHTF18 RNF213 C5 PLAC8 STMN1 FASTK CEP76 ZNF367 GARNL3 CDK5RAP3 CTC1 SRP9 GSDMB RMI2 CARD8 PTCH1 PAWR TMEFF2 CENPF ABCC10 TMCO6 AGO4 AGO1 CEP41 ZNF117 CENPT PARPBP WDR27 BTG1 PIF1 GPT IQGAP3 MED12 ATXN3 SUDS3 RHPN1 TEAD1 CTBS PCMTD1 BRD3 CDKN2C DYNLL1 MAMDC4 WDR19 BIVM-ERCC5 CIT LZTFL1 ZNF33B PLCB4 JMJD7-PLA2G4B HYLS1 CKS2 NCAPD2 SLC29A1 ZNF334 SETD6 CDKN1B PFAS CRB1 LRRC14 C11ORF54 ZNF692 GUCA1B MIEF2 GRAMD4 ING4 WRN GPAT2 BRD8 NUDT13 RNF44 CD164 ANKRD27 PPAN-P2RY11 PPIL2 IPMK GPT2 PNRC1 HINFP NRBP2 CDC25B DCDC1 COPS4 CNOT6 PSAT1 C18ORF32 TUBGCP6 PDCD4 ROR1 UTRN TARDBP GOLGA8B GOLGA8A SLC25A36 FRA10AC1 GTF2I CCNT2 NATD1 SLC25A40 RNF38 HJURP RIDA UBN2 STX7 POTEF KMT5C ZNF667 LDLR NKTR PMS1 KPNA2 ZNF300 CCDC18 SLC38A2 ZNF781 OSBPL7 ATP8B3 NEK7 FOXN3 FANCE ARL17A PUDP TROAP SPIRE2 TDRD12 RAB5B CALCOCO1 INSIG1 ARHGAP4 STK11 ATXN3L PIM1 SLC38A9 BMF ATCAY CDRT4 EIF2AK1 TXNRD1 ASNS GPX8 WIPI2 PTPN13 TPCN1 TMLHE RABGGTB CDK6 PIK3CB TMBIM4 ESPL1 EFHC1 TRIM59 OGT FOXD4L5 NEMP1 MT-CYB MCU SLC26A6 EIF4B FAM114A2 LRRK1 LMBR1L VPS4B ITPR2 HMMR UBR2 METTL15 VPS50 RHOT2 ORC2 VPS52 MROH6 PPP6R2 DENND3 FCHO1 DNAJB6 DNAJB9 D2HGDH BCAS3 ZNF740 MAGI1 CKAP2L DST ERAP1 TMEM256-PLSCR3 KIAA1549L HAUS7 ASPM KLF9 RAD52 PFKL CTDSP2 PABPC1L ANAPC7 ANAPC1 BET1 EIF4A2 UHRF2 LENG8 TTK WDR90 AP1G2 SIN3A CEP152 NPIPA2 ZNF844 NPIPA1 SPG11 NPIPA5 DYNC2H1 NBEAL2 PM20D2 ZNF839 XRN1 KIF20A CALM2 NEIL1 CPNE7 CCNF AKAP9 TPTE AKAP6 HERC4 E2F2 CCDC77 CCNL2 FAM9C COG8 GDF1 BROX XRCC4 INTS3 COX7A2L STAG3 FBXL8 SUGP2 MACF1 TP53TG3F ARL6IP1 PIEZO1 CREBRF GMCL1 NLN MBTD1 ARL6IP6 TSPAN5 HIVEP1 TREX1 KAT7 KCNN4 NADK2 TNS3 AASS RTEL1-TNFRSF6B GABBR1 PTGES3 ANLN TFAP4 ID1 ID2 CCNG2 ATM DEPDC1 G2E3 CITED2 TOP2A STC2 KIF14 CTSV SLC7A11 ACACA SMIM11A SEC14L1 SLC22A15 HLTF MIS18BP1 STK38 ANKRD1 UTP14C DYNC1I2 TM4SF18 LMLN PARP3 GAA UBALD2 HYPK MIB1 SGSM2 TJP1 DPY19L3 HNRNPH1 DPY19L4 NBR1 KCNQ5 LY6G5B HEATR1 TXLNG DERL3 GDPD3 N4BP2L2 ZDHHC23 HERPUD1 FCGBP XPO1 PCLO MNT ACADM EPG5 AC244489.1 WNT5B ZFC3H1 SDHD KLHL24 UBE2B CRIM1 AKR7A2 SGO2 DOK3 AXL GPANK1 FAM161A ATG16L2 BUB1B FANCD2 TBC1D25 STEAP2 MPHOSPH9 IVNS1ABP ZCCHC7 ATF6B ARID4A ZFAND1 TMEM123 TEPSIN PRSS53 RXRB ODF2L AC133551.1 TAF1D EMC2 HSF4 MEIOC GPBP1L1 KNTC1 SLIT3 FGF23 AASDHPPT TBC1D17 FDPS SMAD3 SREBF2 LRRC75A USP49 SLC30A6 ARHGEF17 CKAP2 SMAD6 TMEM230 DARS2 CKAP5 PAN2 MAVS GEMIN8 MXD3 MXD4 DOCK5 ISYNA1 PXK KLHL17 SPPL2B GSTCD ARHGEF28 KLHL12 LTBP4 IGF1R B3GNTL1 EME2 PRR5-ARHGAP8 ADGRG6 ANKZF1 TIPARP HSPA8 CAV2 PCDHGA3 CAV1 USP24 SLC52A1 LAMB2 PILRB TICRR ACVR2B CLK1 ELF2 RBL2 LPIN1 JMY PIKFYVE PDE3B R3HDM2 FAM72D FAM72B HP1BP3 USP33 DNAH7 AGAP4 HMGB2 PLD1 CHD2 AGPAT4 U2AF1L5 SPECC1L-ADORA2A MAN2C1 PDE4A ECT2 CFAP44 MUTYH S100PBP ATF7IP PTGIS DDX17 CAD DDX11 LSS SLC4A8 WEE1 FMNL2 PKD1 KDM3B ABCD4 ACADVL LAMA5 ZNF292 RB1CC1 YBX2 USP19 SLC4A7 CYTH3 RMND5A CBS ACOXL PCED1A ZIC2 ENOSF1 CYTH2 POC1A Untreated v SARS-CoV-2 H1299 4h polyA GSE148729 up ISY1-RAB43 GTPBP4 MEX3A NECAP1 OSTM1 ORAI2 POP1 ASB6 SGMS2 SERPINE1 EWSR1 GPATCH4 SZRD1 TPGS1 FAM168B CNST MYC PXDC1 PPARGC1B SF3B2 ST3GAL4 BATF2 PHC2 F8A3 TIGD5 PLK2 DNTTIP2 SLC16A13 FZD9 RMDN3 VPS37B HDHD3 ELL2 EIF1 EHD1 FOSL2 SLC6A6 FOSL1 EEF1E1-BLOC1S5 FERMT2 FHDC1 SFXN5 SF1 CHST3 ATF5 CDC42SE1 TTYH3 PLEK2 MAPKBP1 BAZ2B SCPEP1 BLOC1S4 HMOX1 IER2 JUNB MYBL2 IER3 HOXC8 PRKACA DUSP5 GSTM4 NSUN2 JUN DUSP1 RIPK4 DUSP2 SPHK1 SAMD4B WNT9A GNL1 FAM102A TUBB2A GNL2 DUSP7 ITPKC TADA2B MMP14 MMP16 RAPGEF6 RNF145 SERPINA1 GRAMD1B ABHD2 CLTB ADO SHB HOXC10 GJC1 PANX1 MED10 ZNF229 TIMP1 RRS1 IFNGR2 HNRNPUL2-BSCL2 G0S2 WTIP SERPINB8 ADAT3 ADAM19 TMEM158 RYBP TAOK2 ANGPTL4 PLP2 HBEGF ZNF335 ZNF697 CDKN1A GCNT2 MIEF1 C16ORF72 C18ORF25 SMPD2 NEFM PBDC1 GPAT4 NUDT18 TNKS1BP1 GOLGA8T CSGALNACT2 MAP3K4 PHLDA1 MAP3K2 TPM4 TPM3 TFPI2 TPM2 MUL1 CDC25A GTF2F1 TICAM1 RNF40 HIC1 RAB35 ZYX ZNF316 SLC25A32 SQSTM1 SLC28A2 SNRPB ZNF552 DGKG LRRC73 TNC IL1RAP FAAP24 ATXN1L ITPRIPL1 NACC1 GBX2 FLNA HAS3 FLNC NCDN YKT6 SH2B3 KCNH2 MAP2K3 BTN2A1 TRAF1 M6PR TRAPPC9 TNFRSF10A NFKB1 ADRA2C ARMCX4 RCAN1 MAFF KIFC3 ARPC4 LHX2 NCL MOB4 MAFG CDC42EP2 FSCN1 ZNF658 MAP3K14 CERS1 ZNF774 BIRC3 SYAP1 DIDO1 NAB2 ISG20L2 CREM GLIS2 CORO1C FGF5 C1QTNF2 GLIPR1 PMEPA1 EFHD2 EIF3CL DIS3 ITGA5 BDNF PA2G4 ARL2-SNX15 OSGIN1 DHCR24 ARL4C DNAJC7 DNAJC5 CCDC43 DNAJC9 TOP1 C8ORF76 TNRC6A BCAR1 BCAR3 FBLIM1 BNC1 C15ORF40 PTBP1 DNAJB2 RRP7A ORC1 CCDC85B TRIM47 SMN2 EIF4H TRIM44 MARCKSL1 PLEKHG2 RNF25 ADRM1 FEM1A FBXL15 KLF4 ZFP91 KLF6 KCTD10 CDC37 KCTD11 ZACN TRIM38 KCTD13 GAPDH MYLK2 MAK16 CCDC71L ITGB1 WDR1 SRXN1 CEBPD CCDC47 FURIN FHL2 LUZP1 SEMA3C ECE1 PIK3CD THSD1 BARX2 HDAC9 SART1 ZNF609 ADAMTS1 TRIM26 SLC25A25 ACTN4 DDIAS ARL14 ENTPD7 RUNX1 C7ORF26 JMJD6 CCDC86 SIK2 EPHA2 STX18 AKAP8 HS6ST1 AKAP5 IL27RA ACTB NUAK2 NOCT PEG10 MAGEA2 STK38L SUSD6 EGR1 IL17RA AAR2 TMED9 SURF6 GADD45A CMC1 NUAK1 HLA-E IFFO2 VASP CDCP1 SMTN ADCK2 TAGLN2 NOL10 PPP1R18 GFI1 PPAN IFIT1 ICAM1 RASSF3 TSPAN9 SOX9 ZNF800 CEP170B TP53BP2 AKIRIN1 KBTBD11-OT1 FOXD1 TNFRSF12A LIF MLF2 SYN1 FUBP3 CALR FJX1 RAB7A AVPI1 CSRNP1 FOXC1 RRAD SDC4 STC1 TGFA LIMD1 TOR1AIP1 FXR2 SMIM11B AANAT SOCS2 DND1 CTSL MAP7 SNX8 LYAR CAP1 C17ORF49 DOHH SLC35G2 LIMA1 TOMM34 TXLNA DLC1 B3GNT5 NEDD4 F2RL1 MAPRE3 ERRFI1 FEN1 FOXA1 FHOD1 TOR4A PRICKLE3 PTN MALSU1 PTMS TBC1D3I AKAP12 POFUT1 ENC1 NCS1 SERTAD1 NFYA TGFB1 IL4R ARHGEF37 B3GAT3 ALYREF CBSL GOLGA6L4 PDAP1 MUC3A SHISA8 ERN1 TMX4 ARHGAP31 PROB1 GPRIN1 UBE2O AMOTL1 PPIF AMOTL2 GRINA LRP12 CD83 ZFP36L1 PMF1-BGLAP PVR RRBP1 RELB PURB KHSRP EFNB2 CCND3 CCND1 NLRP3 TBX20 MSX1 DENND5B OSTF1 RELT TRAPPC2L LRRIQ3 SUPT5H GEM NR4A3 DNMBP COL6A1 PRPF4 GNB2 MAP7D1 DNAL1 TAB2 BLVRB KLHL18 SRPRA ACTG1 SLC2A3 ETS1 CAMSAP1 NR4A1 CNN2 RGS3 AKR7A3 KIF3B IL6R SH3GL1 BCKDHA SUN3 VDR LIMK1 RHBDD2 CMTM6 SHROOM3 LRWD1 HMGA1 ARAP2 ETV3 SAFB NAP1L5 NFKBIB DDX19A NFKBIA ACOX3 MYH9 BLMH CMTM3 NFKBIE HS3ST3A1 ABCB1 PSMD13 DDX3X MCTP1 TNFAIP3 DTX2 CXCL2 TNFAIP2 LAMC2 CHD4 C2ORF49 CXCL1 AFF4 SYNGR1 FAM83G LLPH BCL7B NRIP3 UBE2Q1 BCL7C MAGEA12 WNT3 ZNF189 SPEN DAPK3 PCDHGC4 LMTK2 PLAUR KLHL42 SPATA2L IRGQ ERCC1 TEN1 VGF FAM131C PTX3 TRIB3 B4GALT5 SOWAHC PALM3 YBX1 ARHGDIA GNA11 GNA12 CHSY1 TDG Untreated v SARS-CoV-2 IntestinalOrganoid 24h Differentiation GSE149312 down MAOA MOGAT2 TM4SF20 SLC10A2 ERICH4 CES2 SEC16B NAALADL1 FCGRT CPO DPP4 PBLD TM6SF2 SLC17A4 ANPEP CYP3A4 MDN1 TMPRSS2 PRAP1 BTNL3 SI DGAT1 C1ORF115 AADAC CDH17 HIST1H1C HNF4G PCK2 ALPI CREB3L3 GUCA2A UGT2A3 MME ACADM RBP2 MACF1 NPC2 MYO1A ACE2 MYO15B SMIM24 GPT MTTP SEPP1 GBA3 XPNPEP2 ACSL5 FABP2 SLC5A1 SLC6A19 NDRG1 CRYL1 VILL CENPF GPA33 SLC46A3 MEP1B LRRC19 USP2 SLC28A1 SLC15A1 ENPEP SLC7A9 CLRN3 PLS1 SULT1B1 PHGR1 PKLR AOC1 TRIM40 PLOD2 FABP6 ACE GIPC2 TM4SF5 TMEM176A ABCG2 BRCA1 SLC5A9 CLCA1 MUC3A TDP2 PCK1 GLOD5 MUC17 MGAM PEPD DHRS11 ITM2A ADGRG7 TRIM31 MEP1A HHLA2 AKAP9 ALDOB STOM C17ORF78 EPHX2 GUCY2C FLJ22763 C11ORF86 TKFC MS4A10 MUC13 FCGBP CDHR2 TMEM236 UGT2B17 TMEM253 TMED4 SAT2 VPS13B AQP11 ELL3 UCA1 LINC01133 AK4 PIGR AUTS2 SLC40A1 MT-ND5 SYTL2 DUOX2 METTL7B SMPDL3A MT-ND4L SCIN CYBRD1 MALAT1 ATOX1 TFF1 GSTA1 PSCA LCN2 ANK3 MT-CO2 DHRS9 TMBIM6 AQP3 STMN1 GPD1 GRN FLVCR2 TOP2A CCNB2 SLC35A5 UBE2C AURKB HADHA GLRX NEK2 HMMR BUB1B SLC39A11 ASPM RNASE1 ESPL1 RRM2 SHMT1 PRR11 HEBP1 TPX2 CCNB1 FER1L4 CBR1 CDCA3 MKI67 LDHA LIPA TBC1D2 GNPDA1 MGAT4A ADIRF AUH SLC2A5 ABCC2 B4GALT6 ABCG1 RHOU MAF CCDC170 SYNPR CENPK CENPN PTPN22 QPRT CFB ESCO2 IL18BP GATM RETNLB CCL20 NUSAP1 KIF20B HMGB2 CENPE KIAA0101 APOBEC1 CIDEC CA13 GDPD2 LYPD8 SLC3A1 FTH1 ACER2 SGK1 HPGD IRF9 ITM2B CLIC5 GDPD3 CA2 NPNT VEGFA CST3 PLIN2 TMEM176B IMPAD1 BNIP3 PDCD4 PTGR1 FUCA1 CA4 IL2RG ALOX5AP GNS CD36 OAT ACADSB GLOD4 BNIP3L ARRDC4 ZC3H12A NOS2 MLN OTOP3 KIAA1551 GSTA2 AQP7P1 ZNF292 TTR BCORL1 MS4A8 GPX3 PFKFB3 PDZK1IP1 SUCLA2 PI3 SPCS1 ELOVL7 AP3S1 SEC23A MXI1 SUCLG2 BTD FAM13A NEAT1 TNFSF15 RNF19A HACL1 KLHL24 FUOM HLA-G SPPL2A PIGZ CHAD GCHFR TFF2 TNFAIP8L1 SLC6A4 CPNE2 SLC43A2 LOC100287497 VNN1 PTGR2 SLC51A C6 MCM7 ABAT SMG1 CEACAM7 SLC26A2 STARD4 C19ORF66 TRANK1 EFHC1 ATRX ZNF223 RFWD3 ONECUT2 CEACAM1 GPT2 GLUD1 ACHE MDK BLNK SERPINA1 CDA COX6C KLK7 LOC154761 PAG1 PNCK A1CF PTPRR RARRES1 CA1 ORMDL3 RIOK3 GK NAAA CYP2C9 IFNGR2 XPNPEP1 STX12 SLC35F5 HAPLN4 AIG1 CALCOCO1 C4ORF3 ZC3H11A SUV39H1 HELZ ECHDC2 PTER ALDOC SUSD2 ING2 GOLGA4 TMCC1 CPS1 ADI1 MATN2 PRODH ZFYVE26 SFRP5 SLC37A4 YPEL3 TPP1 NFKBID GGA2 DST SREK1 KDM5D RNF123 GLS SLC5A3 AKR1C4 APOC3 APOB SLC26A3 SLC51B SOWAHA MUC2 GDA G6PC ZG16 NAT2 LCORL FAM3C KDM3A SMLR1 CDK19 FXYD3 PROM1 CYP3A5 CCNG2 CYP27A1 ERBIN EEF2K CYP2C19 APOA1 SLC39A4 HK2 SESN3 PLD1 ZNF224 NUMB WDR48 GIT2 TBC1D15 RANBP9 CYP2U1 SULT2A1 FMO5 PLA2G12B FLVCR1 GSTM4 BAAT LEAP2 GLTPD2 UGCG DMTF1 AFP CD2AP SLC11A2 MT1G ETFDH HIBADH HECA MAGED2 SLC4A7 ASAH2B SLC25A37 MAOB LGALSL MANBA ESPN CPD PGRMC2 PYROXD1 GALC PHLPP2 NME4 ANKRD10 DNAJC25 PDE8A CREB3L2 PHYH VPS13A DIRAS2 LINC01559 PPP2R3A APPL2 PALM3 TMEM41B NCMAP LDHD ETNK1 DGKA SIN3A ZNF770 INO80D ADCY9 RAB3B MSL1 BTN2A1 PDK3 BDH2 CENPJ SLC35G1 UVSSA LINC01602 TMEM120A MT-TV RALGPS1 ATP11B ZHX1 NAT8B TMEM220 PDXP LAMA1 MLH3 TMEM92 MTURN TUBG2 ALDH18A1 C2ORF88 SLC6A8 KCTD13 COPS7B FARP2 MT-TT DAB2 LOC105377924 TBCK IYD RNF186 DNAH12 COG8 LOC389602 CLYBL LRRC28 C11ORF72 LINC01224 TBC1D23 HOXB5 GOLGA2P5 CDKN2B-AS1 FADS6 C9ORF40 TPK1 ANKIB1 BMS1P5 SESTD1 LOC101928820 CNNM1 WDR60 C3ORF62 ERP27 GABPB2 NDNF U2AF1L4 LOC100506098 LOC105375166 GAB1 YBX2 SSUH2 ARHGAP26 PRDM7 Untreated v SARS-CoV-2 IntestinalOrganoid 24h Differentiation GSE149312 up IMPDH2 TIMM8B MISP PSMD8 HSPA5 HYOU1 PRIM2 VCP CISD3 EPB41L2 BCAR1 KPNB1 LMAN2 HSD11B2 IFITM3 PPT1 YIF1A TMBIM1 CDX2 ACSL3 HSP90AA1 AGPS FAM98A TUBA4A NUTF2 VARS RETSAT TRIM28 HERPUD1 OASL RCC1 NPM1 TLN2 PRKAR2A THOP1 PLP2 PLEC NAP1L1 NOL7 TRAP1 SLC33A1 CPT1A C20ORF27 DDAH2 SPRR3 SDC1 KRT18 NT5DC2 KRT7 NEBL TM4SF1 REPS2 KRT17 HES1 MT-ND6 S100P SERPINB5 S100A14 C6ORF132 RPS3A PITX1 SERPINB2 ADH1C SPRR1A KRT19 POF1B TRIM29 RPL39 NDRG2 PRSS23 S100A2 RPS18 TACSTD2 AGR2 KRT8 STARD10 RPS7 TMEM246 TAGLN2 CD2BP2 SMARCD2 BAX BANF1 TMC6 TOMM40 DDOST TOR3A FLNA DNAJB2 SUMF2 MYADM LMNA APH1A TKT PDIA4 CLUH TMED9 ARHGDIA TOLLIP DDB1 LTBR SYNGR2 PYCR1 DHCR24 TWF2 MRPL12 CEBPA AREG CREG1 POMP IGFBP2 H1FX CTSZ MYDGF EPHB2 LGALS3 RPL26L1 BATF2 PSMB2 ESRP2 CXCL8 ZFPM1 LLGL2 B4GALT1 BMP7 SLC2A6 MARS RPS2 MMP1 MANF STAT5A CDH1 PKP3 ACTB TRAPPC9 SRSF1 CLDN4 FGFBP1 PSMD6 CAPN1 JUP PLCD3 TRIM16 ADGRF4 GIPC1 SLC52A2 DKK1 WNT10A CTNNBIP1 CDK2AP2 FPGS PREB PSMA3 PTPRU MED25 DYRK1B RGP1 DDR1 AKT1S1 ARMC7 PYCARD CXCL3 IL1R2 NPRL3 HMGCS2 TNFRSF12A FOSL1 WARS SP110 ETS1 GNAI2 PTGES3 CYR61 SELK SHISA5 RPL8 DGKZ YBX1 IER3 HNRNPM PSMB10 HMGCS1 CAPZB TXN NFKBIA ID3 GSTP1 JUNB C9ORF69 SLC34A2 FABP5 RPL5 RPS19 DMKN RPL10A PPIB PSMB6 PSMC2 EIF5A PPP1CA MRPL20 C1QBP PSMD3 SH3BGRL3 CETN2 VIM RPL35 RPS9 PRPF19 ESAM PSMB4 CRELD2 CALR TRMT112 FXYD5 PSMA6 EHD1 DSTN STK38 EEF1G FASN NUDT16L1 SSR3 S100A10 CD9 TRAF1 OLFM4 KLHL11 FUS BBC3 BRD1 UBE2S MRPL24 BABAM1 LAMTOR2 PRKAG1 GYS1 S100A11 RBM42 SEC61A1 HSP90B1 SRM POLD2 CPLX1 PSMD13 LSM2 PSME3 COPRS DPP3 AHCY CCDC124 ICT1 NHP2 EBNA1BP2 BOLA3 MRPS23 TRAPPC3 PSMD14 POP5 NOL11 CCT7 SEC11C NAA10 HSPE1 SNRPE C1ORF122 LDHB SDF2L1 ODC1 NUDC HSPD1 FXR2 DUSP10 SF3A3 APOBEC3C ID1 ZNF618 GAS2L1 SQLE DOK4 CSRP1 CD47 FAM134C C6ORF47 APBA3 TRA2B GDAP1 STYXL1 CCDC94 CSK ATF6B ISOC2 ALDH3A1 BTBD2 CTSV AGR3 RPL22L1 LAMC2 EMP1 HOXA6 HNRNPL ARPC1B HCP5 ACTN1 CLIC1 BLVRB HMGN2 SERP1 HNRNPA1 SNRPB2 HSPA1L GRAMD1B PHLDA2 SEMA7A FADS2 LAMA3 ANO1 OTUB1 IRAK1 POP4 PSMD11 RAB35 FTSJ1 ARF5 PRMT1 SMG6 CA12 STARD7 ESD ERP29 GNPNAT1 TMEM11 FKBP11 FKBP2 BAK1 CD82 PSMC5 HMBS PHGDH ALG3 FCF1 STX18 PSMC3 TNFAIP1 FADD AUP1 AURKAIP1 APRT MID1IP1 ARMC6 C19ORF24 USP36 ZFHX2 PLEK2 DNAJB11 PDIA3 GTPBP10 THOC7 SPNS1 PRKAR1B ASNA1 P4HTM LSS RNPEPL1 FASTK MFSD12 RRP1 SLC38A5 TSPYL2 PELO OSBPL5 PLEKHM2 SGSM3 VPS37B PSMD2 NAP1L4 PCDH1 RPS6KA4 DHX9 ACOT9 CD320 KDM4A C9ORF152 AKT2 GPC1 VAC14 MRPL40 RPS6KB2 FOXA3 FUBP1 LIMK1 CREB3L1 PPIF PDAP1 TACC1 ZNF639 RPP30 MRPL4 RPUSD1 RRS1 IFRD2 RPS4X FBXW2 H3F3B TMED3 UGDH NAPRT OAZ2 SDHC PEG10 CBLL1 ZNF16 KDM2A FSTL3 MAPKAPK3 EBP ZNF580 ZNF579 FRMD5 HYAL2 RAVER1 ZNF703 ZDHHC12 HSPBP1 MKL2 NECTIN3 RAD54L2 GPATCH4 CCDC167 ECH1 DESI1 HGH1 RBM10 SNRPF SNRPD1 MORC2 FANCE PID1 PRRC2A SBF1 AP2B1 UBALD1 LINC00506 TUSC1 KIAA0586 RNF126 TSIX DIMT1 ENSA C21ORF59 CENPB DDX49 DNAAF5 MESDC1 RBP1 ZC3H3 FSIP2 RN7SK CACFD1 RPS14P3 ELOF1 FAM219A PIGM MGAT3 FBXW8 ESRG TAF6 LSM6 SSBP3 LOC102724532 RNA45S5 NUS1 GTF2A2 IL17RE PPP2R1B PLA2G16 LRRC75A-AS1 ZNF408 SMARCC1 TSPAN17 SNRNP35 SFXN4 LOC101930085 ATAD3B NABP2 BLOC1S3 RMND1 FAM118B ATP9B ZAK TMEM63A VAPB PYCRL PDE6D KRTCAP3 ZNHIT6 AES ADPRHL2 LOC101927391 MED27 Untreated v SARS-CoV-2 IntestinalOrganoid 24h Expansion GSE149312 down MAOA ANO9 MOGAT2 CEP250 PIK3R2 CEP350 FCGRT COL6A1 ATP6AP1 ANPEP MDN1 PRAP1 SUN2 SMOC1 UBXN6 TRIB3 VHL RRP9 SLC26A6 RNF24 SMIM24 TYSND1 TMEM97 SLC22A18 UNC93A SLC5A1 PRRC2B NDRG1 KCNQ1 CDHR5 CENPF SLC15A1 MPZL3 PLOD2 FABP6 ACADVL HLA-A TMEM176A ISYNA1 CYB5R3 WASF1 TMUB2 PLD3 MUC3A PCK1 MEP1A BRD4 HHLA2 USP21 APP CSNK2A1 TKFC REN REEP6 FCGBP PIGU STC2 DHTKD1 SBK1 ZBTB44 FGFR4 NDUFV1 ZKSCAN1 IKBKB TFF3 MCF2L AK4 PIGR ECM1 AQP5 DUOX2 DEPTOR NFAT5 GATAD2B SMPDL3A PNRC1 TNS4 KIAA1324 TET2 SLC2A1 HIST1H2BD MALAT1 LCN2 KCNQ1OT1 SLC25A23 SYBU TMEM94 MAN2B1 TMBIM6 PDIA6 LGALS3BP DAZAP1 PRKCSH GRINA GAA GIGYF1 TGFBI KHNYN QSOX1 LRP1 SLC16A3 SLC6A6 TOP2A P2RX4 DDIT4 TMEM38A LGALS1 RNASE1 H1F0 RRAS SLCO4A1 GAPDH PRR11 HDLBP TPX2 MKI67 SH3PXD2B TPI1 SCD FGFRL1 CDKN1C COLGALT2 PBXIP1 IGFBP3 TGFBR3 KLF11 AXL FGFR1 HMGA1 TMC4 COL17A1 LAMB3 SERINC2 INPP5D CASP2 MAP2K6 TRIOBP SYNPR DYRK1B RERE MGRN1 ZNF385A ULK1 SMARCA1 QPRT DENND1C CYFIP2 CKAP2L IQGAP3 RETNLB LCK CENPH KCNN4 CENPE APOBEC1 PLIN1 RNASE4 PML CLDN2 ANGPTL4 SPAG4 DBP TSC22D1 BTG2 IGFBP4 HPCAL1 TXNIP TPPP3 CLIC3 U2AF2 VEGFA BCAP31 LUC7L3 TMEM176B HNRNPUL1 CCNI BNIP3 CDK16 FUCA1 PSAP FXYD5 FAM134A RBBP4 MKNK2 SAT1 WDR45B CYP2S1 BNIP3L KDM6B ASCL2 OLFM4 ZNF292 INSR MUC1 SEZ6L2 MIR210HG BHLHE40 PFKFB3 PDZK1IP1 YPEL5 NPTN-IT1 YIPF3 WDR54 PAM SLC39A10 FAM60A KIAA0430 MXI1 RLF FAM13A SYT13 GRB7 OGT APOBEC3C NEAT1 EFNA1 ZNRF3 VEGFB KLHL24 NARF CLIP2 CDCA7 MLXIPL EFNA3 ZBTB22 STXBP1 NUDCD3 FUOM MSLN PIGT HLA-G NLGN2 TFF2 DGAT2 TNFAIP8L1 SLC27A1 PTMS TESC AARS PELI2 PRSS2 VNN1 ARID4A CEACAM7 IDH2 MLEC CCNT1 GLG1 PRRC2C TMEM107 BBX KDM5A UCP2 ASH1L IGF1R ANKRD12 CEP290 THOC2 CAPN12 ETS2 LETMD1 PMM1 N4BP1 TRIB2 BRI3BP CA9 ENO2 SERPINA1 ALDOA CTSA CDA TRAF5 NAV1 MEX3A PDK1 DOK7 SMOC2 SNHG7 EGLN3 LEMD1 CLK1 PAG1 DNM1 TMEM255B ADAM8 GAL3ST1 PTPRR GABRB2 ANKRD34A KCNH2 TNFSF9 CXCR4 TNFRSF1B IFNGR2 FAIM2 RAB5B ATG9A IFITM10 CALCOCO1 CMTM7 PARM1 MPHOSPH8 TSPAN5 ANKZF1 ZCCHC7 EIF2AK1 SMIM3 ALDOC TMEM123 SLC39A8 P4HA1 GOLGA4 TMCC1 ZMYM2 CDCP1 ATXN1 PGPEP1 PPP1R3B TRAPPC6A SYNE2 ATP9A POLR2A SLC37A4 EPHB3 REPIN1 BCL6 YPEL3 TAF1 FARP1 TBCD C6ORF106 SGSM2 GUCD1 RPS6KA2 GSDMA PRSS8 TNFRSF11A HILPDA HNF1B PPARA KLK1 SLC5A3 EXOC3 VAMP2 SREBF2 HDAC4 KDM3A ARID1A SEMA6A USP28 PLXNA3 SMARCC2 ZBTB4 CDK19 PTPRF SYT7 WNK2 CHD6 EHMT2 CYP3A5 PDGFB SETD5 P4HA2 RBPJ FOXA2 DHPS UBR4 SLC39A4 DNM2 USP49 GSTM3 HUWE1 PHKA2 POU2F1 CRAT PPP1R9B SOX4 PPP1R1B SLC11A2 ERO1A AHCYL1 TMEM219 NYNRIN CTDSPL FAM213A PFKFB4 NIPSNAP1 ZSWIM4 C6ORF223 OSBPL7 NRM HES6 PLEKHB1 ANXA6 NFIX ZNF395 ESPN DENND4C KDM5B ZC3H6 LOC100506548 ZFP90 PDK2 ZNF703 RNF43 KAT6A CDK18 ABHD14B STX10 MACROD1 GRAMD1A NME4 LHPP DHRS3 ECH1 GPATCH8 RPRD2 BAZ2B PFKP C11ORF68 BCKDHA PHF13 SNAPC3 PRKAB2 SNTB1 ZC3H13 PALM3 TCF20 ZFC3H1 HSPA12A IDUA PDK3 CCDC146 LRP4 ESRG IL17RE TMEM63A TMEM120A PDXP MLH3 TMEM92 SLC6A8 RNF186 HOXB5 CNNM1 NDNF YBX2 C6ORF136 ZMYND8 ZNF766 PDP2 ADCK3 PCCA ADRBK2 ITPR2 PDE4C CCNY PRR36 PWWP2A ADRBK1 LOC729348 ZNF652 ANKRD26 PALD1 RGL3 C8ORF58 RFX2 BRD3 MGC57346 ANKRD37 PIP4K2B FAM193A C11ORF49 SRRM1 LDLRAD3 COLCA2 BPTF NBAS LINC01011 LOC113230 ZMYM3 GSAP INAFM1 LOC100131257 ATXN7L3 AP4B1 NPSR1-AS1 NKTR ARHGEF40 MCM8 HIVEP3 GPR153 SORBS1 CADM4 FAM222B CNNM2 VOPP1 DNAL1 MARCH9 HCG8 Untreated v SARS-CoV-2 IntestinalOrganoid 24h Expansion GSE149312 up SLC36A1 SRP19 F2RL1 TIMM8B RAB2A EGR1 CTSL GHITM COMT NMI PKP2 TOM1L2 GUCA2A HSD11B2 TPM4 RALA NGDN ANXA2 FABP2 BAG3 LRRC66 RAB18 OAS1 AGPS PHGR1 TUBA1C ANXA13 CYP2C18 CUL2 ABCG2 TSPAN8 KRT20 CXCL2 HSPA8 FRMD3 RAB10 KALRN ARL14 MYD88 LRRC1 TPMT ABHD3 CD55 RWDD3 ALDH1A3 MCL1 CAV1 CDK2AP1 LINC01133 KRT7 KCTD1 CFTR RGS2 TM4SF1 IFI27 HS3ST1 KRT17 IL33 CCDC84 NR4A2 GCNT3 S100P SERPINB5 HOPX MT1E MTRNR2L1 BCAS1 GADD45A RND3 TACSTD2 AGR2 COPS9 MAL2 CD24 THBS1 HBEGF RPS6KA1 SF3B4 UNC13D TYK2 TMED9 RHOB TUBG1 ME1 NLN AREG POMP SEC23B RGS16 HSD17B10 IL18 LGALS3 NME1 CDKN2B IFI27L2 ARNTL2 CXCL8 AKR1C3 ARHGEF35 CAMK2N1 MMP1 GADD45B EDN1 CYCS GJB3 CGN FGFBP1 PSMD6 FAM84B PLCD3 TRIM16 EREG KITLG CLU DKK1 CBX4 PDLIM5 PYCARD PSAT1 CXCL3 IL1R2 IL1RN PLAC8 IFIH1 MLKL SOCS3 ARC GCH1 HPSE AIM1 F3 AHR CAV2 EPAS1 TNNC1 HNRNPM ACTG1 SGK1 CRYAB MYL12B DUSP1 TMCC3 ID3 KLHL5 HPGD JUNB CLIC5 SMAGP JUN CA2 CTGF FABP5 COX7A2 ALDH1A1 PSMB6 PSMC2 MRPL20 RAP1B NDUFB3 DHX15 FDX1 HSPH1 ROMO1 DNAJA1 RBM3 FSTL1 STK38 ANXA1 SERPINB6 LXN NDUFA4 POLR2K GTF2B ATP2B1 ACYP2 MRPS18C S100A10 CACYBP GEM HSPA6 PPP1R15A SULT1E1 AMOTL2 FLRT3 IER5 BAMBI CHAC1 SLC25A33 NR2C2AP UBE2A SNRPG HAT1 SELT NQO1 MCRS1 ASNSD1 PSMD1 ATP6V1C1 TXNDC17 S100A11 CRYZ C12ORF29 ATP6V1D UBE2N TEX30 DYNLT1 AHCY TMEM126A MCUR1 EBNA1BP2 TMEM14A TMEM230 BOLA3 GSKIP UGT8 TRAPPC3 COMMD8 ATG5 FAM96A AMD1 STEAP1 PRPF3 ETHE1 PSMD14 LACTB2 ELOVL7 SEC11C GLRX2 HSPA1A YAE1D1 C1ORF122 HSPA2 C3ORF38 MRPL18 ARG2 SLC25A46 ODC1 GRHL3 DNAJB9 SGMS2 PIP5K1B SRSF2 ID1 SAMD4A SURF2 AKR1B10 SRI ID2 ZMPSTE24 MCC CD47 CEP76 MRPL47 TRIAP1 TCEB1 TRA2B ANXA10 ASCC3 RIPK2 RNF139 KATNA1 INPP1 HNRNPF IFI6 TMEM126B KIAA1279 MBNL3 CHAC2 C10ORF99 MIR22HG CASP7 CORO2A PJA1 PKIB XRCC4 EMP1 MB21D2 TWISTNB TGS1 SNHG9 PLK2 ZNF649 PMAIP1 SP140L NMUR2 NCEH1 FAS FUT4 BLZF1 C8ORF4 RAP2B CALM2 UGT2B15 PRKAG2 PDLIM2 TRIB1 PHLDA2 SERPINB8 SLC25A32 TUBB3 ANO1 PLSCR1 NCOA7 C4BPB RARRES1 SFTA2 CA1 PSMC4 FBXL5 TIMM23 PSMD9 VPS29 RTCA GTF2H5 SACM1L C3ORF14 NAGK STX11 GK TAF9 ZMYM4 DHX35 PPP4R1 AKIRIN1 C12ORF45 TPM1 BHLHE41 ABHD16A ANXA4 ABHD5 KRT10 DEGS1 MID1IP1 MTA2 DCAF13 EPHA2 BCCIP CLDN1 NT5C2 RPF1 DNTTIP2 PTP4A1 MRPL33 CLTB MPC1 NBN CCDC71L ATP6V0A2 PLXNA2 PPP2CB SFT2D2 SLC26A3 OSTM1 KDM6A FERMT1 FUNDC1 POLR2F PRR5L CYP2C19 PPM1D TAF2 PIGG GCLM AKR1C2 CIAPIN1 NAT1 BAAT AKR1C1 ACOT4 NIPAL1 LMO4 TRAF4 SFPQ GPAT3 PRMT6 PSMA5 FAM136A ZCCHC10 RPP30 HUS1 CCNC TXNDC9 MT1G CLN5 MGST3 TIMM17A AHCYL2 CLDN23 KRT23 ANXA9 ADGRF1 POLR2L MFSD1 ADGRG6 USP42 ABTB2 SKIL MIR31HG MRPL41 DSEL SLC22A18AS MRPS21 MFSD2A LOXL4 DSC3 DCUN1D1 SDCBP2-AS1 LY6D PCDH7 YTHDC2 CRNKL1 ZNF697 TRIM36 GPD1L HSPBP1 LGR4 DNAJC9 FRS2 ADNP2 ANKRD13C BICC1 TRAPPC8 PHACTR2 PDE12 RAB27B FOXN2 SLC20A2 DTWD2 PALLD TMCO1 PHKA1 COA6 HIGD1A MGST2 PID1 ATP5F1 LYSMD3 DCDC2 AGA LSM10 DUSP14 BTBD10 OPA1 MMP28 FSIP2 RN7SK NUS1 GTF2A2 ATP9B LOC101927391 LOC105377924 NCDN KIAA0196 ZXDC TSPAN2 FAM177A1 ALG2 CCL15 WTH3DI UFD1L ARHGAP42 ITGB1BP1 TRUB1 SPAG1 ZMYM6NB MT-TM STRAP FASTKD1 ENTPD7 SLC25A24 CRYZL1 DFNA5 HNRNPLL DUSP11 RABGGTB MINOS1 DPCR1 MOB3B MED8 WFDC21P RBM45 SHTN1 TSFM MRPL19 NHSL1 NUP35 BORCS7 NCBP1 LOC105369340 DPH3 EPT1 SNAP23 OGFOD3 MARCH3 LINC00941 OVOL2 KIFAP3 TRAPPC13 ZNF271P SMG8 Untreated v SARS-CoV-2 IntestinalOrganoid 60h Differentiation GSE149312 down TM4SF20 SLC10A2 HDAC2 GDF15 MDN1 SPOP NPTN TRIB3 RBL2 EP300 PKM ZC3H18 NEDD9 CENPF HSPB1 XIAP EHBP1 NCK1 REG4 ATP1B1 PLOD2 FABP6 BRCA1 SLC30A7 PCNT MUC17 ITM2A UNC5CL TRIM31 USP21 STOM CCDC86 ARL14 CDK2 LRRC8A USP34 LYRM2 TMEM30A FGFR4 CD55 UNC119B NAE1 H2AFY2 UCA1 CEACAM6 TFF3 MT-ND3 CXCL1 CLCA4 MCF2L ITGA2 AK4 FAM114A1 NT5DC2 SRGAP1 AUTS2 CEBPD RPL14 MT-ND1 MT-ND5 GCNT3 DUOX2 KLK11 TEAD1 TNS4 DSG2 BCAS1 RPL13A C12ORF75 MT-CO3 SATB1 TFF1 MT-CYB CEACAM5 MT-ATP6 MT-ND4 MYO5C EMP2 DHRS9 CD24 MPZL2 STMN1 GSN TGOLN2 SIN3B ABHD2 PLK1 C1ORF43 XXYLT1 UBE2C SLC16A1 DDIT4 LHFPL2 MCM2 UACA ASPM RNASE1 CDK1 SPRY2 GAPDH TPX2 CCNB1 FER1L4 LDHA SCD ANG TOPORS FAM131B TCN1 TGFBR3 AZIN1 AUH KLF10 BMP4 TLDC1 MLPH COL17A1 SYT8 SEMA4B PPP1R13L MST1R MCCC2 SLC7A1 WLS TCF3 SYNPR AP5B1 KMT2B ARHGAP35 TAB3 PLEKHG3 SMARCA1 SMC2 RETNLB ECT2 KIF20B MAD2L1 COTL1 CENPE KIAA0101 CIDEC PSAT1 PRSS22 TMEM143 RNASE4 TINAGL1 F3 TSC22D1 ACER2 RNF7 VEGFA S100A4 LYZ SERPINE2 SLC12A2 IMPAD1 RPL18 DDX3X PIM3 NAB1 PHLDA1 PRPSAP1 WDR45B CCNL2 MARCKSL1 UPF3A CD164 SLC38A2 BNIP3L DEK ZNF292 UNC5B GPX3 CALB2 TIPARP BHLHE40 TAF1D MAFF SNHG1 PFKFB3 PPRC1 TM4SF4 UBE2M RRM1 CRYZ SLC29A1 UBE2N PCNA TIMP2 PTMA DKC1 PAM MRPL16 PTDSS1 BZW1 TMPO FAM60A MPLKIP PPP1CC HSPA1A AMIGO2 MXI1 SNHG8 SERINC5 FAM13A RHPN2 SYT13 GRB7 DLAT MRPS6 DQX1 EFNA1 EPB41L4A-AS1 TNFSF15 INSIG1 NCBP2-AS2 CEMIP ITGAV NECAP1 EFNA3 HLA-G ANXA10 MARS2 USP25 PIGZ ADPRHL1 TFF2 TNFAIP8L1 PCSK9 CTSV MMACHC ABAT CCDC68 BBS2 CEACAM7 MIS18A SPIN4 BCL10 GORAB ST3GAL1 TOP1 ATRX FEM1C TP53BP2 XRCC4 ZNF223 HPS5 PATL1 NMUR2 RABGAP1L TRIB2 PARP3 RAB8B NMU CA9 CDA KLK7 GNE HPDL EGLN3 LANCL2 XYLT1 FHL2 PNCK TNFRSF10D KLK6 PTPRR FFAR4 ITGA6 NUBP1 GLRX3 PSMD9 AASDHPPT UBA2 IDI1 GK CREB1 CYP2C9 EGLN1 SC5D SEPHS1 NUP153 TMEM43 APIP HPF1 GEMIN8 VSIG1 CHMP1B C4ORF3 CAPRIN1 ABHD12 DEGS1 LPCAT4 ZC3H11A NDE1 STRA13 TBX19 EPHA2 ECHDC2 KTN1 USP53 DNTTIP2 ALDOC TMEM123 P4HA1 BRIX1 SMIM13 TMCC1 PMF1 BOLA1 COL27A1 FA2H MYEOV TET3 MZF1 KLK10 VPS13D NISCH TRIP10 AGFG1 HILPDA SLC5A3 APOC3 NPEPPS INSIG2 FXN KDM3A PTPN11 SLC44A4 FXYD3 PROM1 SRPK1 FERMT1 PCM1 R3HCC1L CLMN MIA3 DAPK1 UBR5 ATP13A2 UBIAD1 SLC39A4 HK2 TRPV3 DNM2 ZNF19 ZNF641 SPICE1 NUMB MTHFD1 GSTM3 ABCA2 SAMD8 AP1AR CLINT1 TGIF1 HOXB4 FAM136A FBXO45 CDCA4 C11ORF84 AFP GATA6 ING1 SLC11A2 ERO1A OXR1 ASPH NYNRIN ADGRF1 DENND6A TNIK ASAH2B GGA3 KIAA0753 ELMSAN1 C6ORF223 GSE1 HIVEP1 RBM14 JMJD8 GJB4 ANKRD50 CPD TMEM131 STON2 CABLES2 MYRF ARFGEF2 RBMXL1 CDR2 TAF5L CLIP1 NME4 ARHGAP12 ANKRD10 GPATCH8 MAK16 KYAT3 HSDL2 SOS1 DIRAS2 PRRG4 RASAL1 LINC01559 KMT2D ATP11A TBPL1 MZT1 SPA17 TMEM41B GRHL1 CEP95 USP37 B3GALNT2 ZNF770 HOXA3 RAB3B MSL1 MLLT6 RAB3D THAP5 ACAP2 LOC101927391 LAMA1 SLC6A8 LOC105377924 IYD RNF186 HOXB5 CNNM1 C3ORF62 NDNF U2AF1L4 SSUH2 DUSP11 TSFM MARCH3 ZMYND8 ANKRD26 GPR153 HCG8 PARN BCL7B SLC17A5 SLC35B2 INIP C17ORF100 PKNOX1 ZDHHC8 SENP5 ADGRL1 KRT42P ESYT2 MRPL10 CHAMP1 OR2A4 DDX47 THAP10 PDS5A GTF2A1 SETD9 RUFY1 OLMALINC LOC101929128 HINFP SAV1 STX1A MRPL39 APBB3 CHST14 SEPT6 FAM109B TMEM69 ARHGAP39 CHM FAXDC2 TCFL5 CACNB3 LINC01057 SERAC1 ENOPH1 ZNF337-AS1 ZNF717 OBFC1 UMAD1 SNX30 C2ORF42 ELF2 LOC644794 BRWD3 MRM2 FAM213B COIL SEC22A TMEM170A PDS5B LYAR MYOM3 CROCCP2 Untreated v SARS-CoV-2 IntestinalOrganoid 60h Differentiation GSE149312 up MYH9 MAOA NKX3-1 MOGAT2 MISP CES2 CAPN5 MVP STAT3 CTSL UBD CISD3 BTNL3 SI AADAC DDX58 RBP2 LSAMP MYO1A DPEP1 ZZEF1 HSD11B2 CCND3 SLC7A7 IFITM3 IFITM1 GBA3 FABP1 DDX1 ISX KHK SLC6A19 TPRN HLA-B GPAA1 NFKB1 ACAA1 BAIAP2L2 TAPT1 POFUT1 DMBT1 COL4A2 CYP2C18 TST ACE STAT1 HGS ARHGEF11 TMEM173 LGALS4 PEPD DHRS11 OASL ALDOB MOV10 AKR7A3 ISG15 EPHX2 SRC AGPAT2 DIAPH1 GSK3B NUB1 TKFC DNAJC19 PLEC MX1 UGT2B17 RIOK2 ACBD4 METTL7A NDUFV1 SGTA DCTN2 TBCB KRT5 MT2A PIGR IFI27 KRT17 SCGB3A1 TSPAN6 MT1E METTL7B CXCL17 LINC00342 ADH1C ZNF827 KRT19 KRT15 TRIM29 SLPI ATOX1 S100A2 SORBS2 GSTA1 PLA2G7 KCNQ1OT1 STARD10 FTL TAGLN2 CD2BP2 TTC14 OGDH PYGB KCNK6 GPAT4 BANF1 AQP3 TAOK2 SIK2 DDOST C15ORF39 SLC3A2 DHRS7 STEAP3 PCNX3 FKBP8 CD81 GPD1 APOL2 RHBDD2 AK2 SDC4 CEBPA STS SPR MT1F KIAA0930 SLC39A11 TIMP4 NDUFAF3 ALG14 EPSTI1 MPDU1 GSTO1 G6PC3 VPS25 PADI2 CBR1 MKI67 SORT1 AKR1C3 TFDP2 B4GALT2 ABCC2 SERPINF1 SLC2A2 TRAPPC9 JUP KRT14 MYH14 LRP6 BCL9 BMP3 IRF8 CDK2AP2 TFCP2 SOX6 KRT13 BMP1 EDC4 CLCN5 CCDC9 DYRK1B RBM47 AKT1S1 EPN1 RSAD2 CYFIP2 PYCARD IFIT1 IFIT3 HLA-F OAS2 XAF1 BCL2L15 TREX1 TRIM10 MAB21L3 HERC6 TNFRSF12A HSH2D XDH SERPINA3 TRAFD1 UBE2L6 SP110 PSENEN PSME2 SHISA5 DGKZ AKR1A1 THRA CAPZB ID3 GSTP1 KLHL5 IRF9 MED18 C9ORF69 P4HB CRIP1 SCGB1A1 ALDH1A1 GABARAP KLF9 IFI44L NDUFS3 PRDX5 VPS28 EIF5A ATP5D TAPBP LYPLA2 CALR HN1 MRPL28 RBBP4 GUK1 PPIC OAT ARRDC4 KDM6B CLEC2B GSTA2 SULT1E1 HERC3 NPDC1 MS4A8 C1ORF233 AMOTL2 BRD1 HMHA1 ZNFX1 PRR13 M6PR ATP6V0D1 CCDC124 TMEM14A GSS UQCRQ LYSMD2 ZNF593 ETHE1 NDUFA9 EMC9 XPR1 TLDC2 APOBEC3C ID1 GOLT1A RRAGC HACL1 LINC00543 TRIM41 C15ORF48 MT1H MLXIPL FUOM GDAP1 MOCOS GSDMD ANKFY1 TMEM212 ACTN4 ALDH3A1 IFI6 LOC101927021 MT1X MAN2A1 ZNF623 TNFSF13B C10ORF99 MX2 HERC5 CHD4 PPP1R3D PAQR8 PAPSS2 LINC01087 GHET1 OSR2 LINC00896 JADE2 FAS PXK TRIM26 BRI3BP SERF2 CALM2 CXCL14 KRT6A ANO1 ASPDH FCHSD1 LOC100419583 CHN2 CA1 PLAGL2 SEC13 USB1 SSU72 BCL2L14 CASP9 DPP9 TXN2 YIPF1 TOM1 HMBS TMEM199 ALG3 COQ4 SUCLG1 ZNF471 TIGD1 SCD5 CHMP1A C9ORF16 BST1 APRT COMMD3 C11ORF80 SLC25A10 IP6K2 STAU2 DNAJB11 SUSD2 CPS1 FAM173A PGPEP1 CLTB MATN2 VPS18 NCOR2 NOX1 SFRP5 SLC37A4 KATNB1 PPDPF ATP6V0A1 ILVBL ACP2 TSPYL2 URB1 POLR3A APEX2 SLC52A3 PRSS8 GLS SLC26A3 SLC51B CMBL RAB40C ZBTB21 AKT2 AMBRA1 CYP27A1 CPTP ABTB1 NR1H3 GPLD1 HAAO BAAT LEAP2 ACOT4 HOXA1 VPS4A BRMS1 ORC5 MRPL4 GRWD1 TXNRD2 MAP2K2 MT1G ECHS1 FMO4 SDSL JOSD2 PDSS2 SLC4A7 LINC01420 KANSL3 FOXJ2 CBLL1 MID1 ZSWIM4 SLC25A37 C7ORF50 KCNMB4 MRPL41 ANKRD54 PXMP4 ESPN KLHL13 FAM198B SNX24 ZDHHC12 NOC4L HGSNAT ZMIZ1 LINC00511 FAM217B ABHD14B CIB2 POLR3D SMYD5 SNRPD1 ERGIC3 MFSD4B SMYD2 SSPN PLPP5 CACNG4 ACOX2 GGACT PRLR AMT RLIM ST6GALNAC4 ZNF445 KLHL8 OPA1 LINC00506 TSIX MGAT3 FBXW8 ESRG TAF6 RNA45S5 LRRC75A-AS1 TSPAN17 NABP2 CRYZL1 DPH3 LOC729348 ZNF652 NBAS LOC100131257 ABCC13 SCAMP5 BLOC1S1-RDH5 ROR1-AS1 ACOT11 PRR26 ZIM2-AS1 DSN1 SUSD1 DPH7 GUF1 C17ORF89 LINC00504 LOC153684 DENND2D UGDH-AS1 FOXE1 PODXL2 MCF2L-AS1 CCDC18-AS1 SCAPER LOC101929486 C3ORF17 ASCC2 LINC00368 MIR205HG ZNF738 AAMDC RAB3IP C16ORF95 OCEL1 NHLRC2 LOC105372751 MAP2K5 LOC101928103 MT-TL2 MMP24-AS1 HHLA3 IFT140 ZNF622 RHBDD1 FAM234A LOC729987 MTRF1L CCDC144B MFSD10 SMIM19 LINC00670 C18ORF8 DCTN4 LOC101928068 TAF9B PROSER1 LOC102724434 ZNF584 PABPC1L ABHD17A EXOSC6 FTSJ3 C18ORF61 SGK223 Untreated v SARS-CoV-2 IntestinalOrganoid 60h Expansion GSE149312 down MYH9 ANO9 MOGAT2 FAM3B FCGRT MAPK3 GCC2 COL6A1 PRAP1 CSDE1 UBXN6 C1ORF115 TRIB3 HIST1H1C SMIM24 SLC22A18 NBR1 UNC93A XPNPEP2 ACSL5 NDRG1 FURIN ZBTB7B CDHR5 HSPB1 GPA33 RYBP AMN CLDN15 RBCK1 TCN2 MPZL3 MTMR11 AOC1 MID2 PLOD2 HLA-A TMEM176A PCK1 MUC17 HHLA2 SBNO1 C17ORF78 APP REN FCGBP STC2 VLDLR LIFR GBE1 ZKSCAN1 DEDD2 RNF128 EIF4B UCA1 TFF3 AK4 FAM114A1 PIGR ERBB3 SLC40A1 ECM1 DUOX2 S100A14 ELF3 SMPDL3A TOX3 PNRC1 DSG2 MT-RNR2 EPCAM TET2 SLC2A1 HIST1H2BD MALAT1 TFF1 CEACAM5 PSCA LCN2 KCNQ1OT1 SLC25A23 TMEM94 MPZL2 MAPK8IP3 GSN TGOLN2 GAA KHNYN SH3BP2 QSOX1 LRP1 SLC16A3 ITPKB GRN SLC6A6 GAS2L3 P2RX4 DDIT4 TMEM38A ELL2 LGALS1 RRAS PPARG SLCO4A1 ALOX15B FER1L4 LDHA TPI1 SCD LTBP4 CA11 PLEKHA1 G0S2 CDKN1C PBXIP1 IGFBP3 CDKN1A BMP2 KLF11 IGBP1 AXL SPINT2 SPINT1 ITGB4 TMC4 COL17A1 DSP LAMB3 SCNN1A PTK6 SEMA4B SERINC2 ZNF217 CLSTN1 TCF7L2 SORL1 SYNPR RERE KDM4B DDR1 SMARCA1 PTPN22 QPRT AOAH RETNLB KCNN4 APOBEC1 PLIN1 RNASE4 TINAGL1 RASA4 ADM TMEM171 NFIL3 PIM1 ANGPTL4 EFNA2 SPAG4 DBP TSC22D1 IRF2 IGFBP4 CHMP4B HPCAL1 EEF2 TXNIP TPPP3 CLIC3 VEGFA S100A4 PLIN2 ITM2C BTG1 GABARAP TMEM176B TAPBP CCNI IMPAD1 BNIP3 ARRDC3 TSC22D3 SH3PXD2A CAMTA2 PIM3 PSAP FXYD5 AQP1 MKNK2 STK38 PHLDA1 EIF4A2 SAT1 WDR45B CYP2S1 WASF2 CD164 SLC38A2 TMEM256 GPX4 MYZAP BNIP3L ARRDC4 DDIT3 ASCL2 EDN2 DNAH1 ZNF292 HERC3 INSR MUC1 TP53INP2 GPX3 MIR210HG BHLHE40 SERTAD2 PFKFB3 KANSL1 PDZK1IP1 WBP2 YPEL5 PAM CXXC5 AP3S1 MXI1 SUCLG2 GNA13 MXD1 FAM13A TOB1 GRB7 MKRN1 MRPS6 NEAT1 EFNA1 EPB41L4A-AS1 INSIG1 HOXA5 CREBRF MSMO1 KLHL24 NARF C15ORF48 GLCE CD46 MLXIPL ANKRD9 MSLN RAP1GAP2 PAQR5 HLA-G PCED1B MUC20 TFF2 DGAT2 SLC27A1 TFRC PELI2 ARID4A CEACAM7 SPIN4 BBX CCDC186 UCP2 ATRX GFPT1 ANKRD12 PNISR CAPN12 RSF1 SLC25A36 ETS2 CEACAM1 VAT1 LETMD1 PMM1 CA9 ENO2 SERPINA1 ALDOA ACTN1 CDA CAST ADD3 NAV1 MEX3A HSPA1L PDK1 PTPRE SMOC2 SNHG7 EGLN3 FRY LEMD1 CLK1 FHL2 PAG1 PNCK TMEM255B ADAM8 GAL3ST1 CD68 PTPRR IL10RB ITGA6 PGK1 TNFSF9 TRAF6 CXCR4 PIAS1 IFNGR2 FAIM2 SC5D IFITM10 AK3 SMURF1 UBE2R2 CALCOCO1 AHNAK C4ORF3 ASAP1 POLH ZFHX2 C14ORF93 ANKZF1 SMIM3 USP53 ALDOC TMEM123 P4HA1 GOLGA4 TMCC1 ZMYM2 PPP2R2A PGPEP1 TMEM91 PPP1R3B GPRC5C P2RY2 C16ORF58 TRAPPC6A ATP9A SMPD3 SFRP5 TAOK3 BCL6 YPEL3 DOCK6 GUCD1 TCTN3 PPARD GSDMA PRSS8 HLA-F-AS1 HILPDA CEP72 PPARA KLK1 SLC5A3 SREBF2 NPEPPS INSIG2 KRT12 ARHGAP5 KDM3A PLXNA3 LPP SENP7 ARHGAP32 CDK19 PTPRF SYT7 FXYD3 SST CYP3A5 RAB40C PDGFB CCNG2 P4HA2 CHD2 CLMN RBPJ ADIPOR2 SLC39A4 HK2 DNM2 GSTM3 ABCA2 WDR48 PHKA2 GTPBP1 SLC16A4 FMO5 ACSS2 CRAT MAP3K2 UGCG SOX4 SLC11A2 TMEM59 ERO1A ARHGEF2 FLNB NYNRIN FAM213A PFKFB4 CSRNP2 KDM5C TMEM141 FAM83A ZNF395 ESPN ZNF608 DENND4C IGF2BP2 SBF2 KDM5B ZC3H6 LOC100506548 PDK2 MACROD1 KIAA1191 DHRS3 OLFM2 KCMF1 DNHD1 ZNF609 BAZ2B LCOR PFKP DIRAS2 AHDC1 PRKAB2 LINC01559 SHANK2 SNTB1 GATA6-AS1 PALM3 DGKA BAZ2A GDI1 FNBP1 HSPA12A RAB3B MSL1 PDK3 CCDC146 LRP4 RSBN1 COL5A3 ESRG IL17RE TMEM120A MT-TV ZHX1 TMEM92 ALDH18A1 SLC6A8 RNF186 ANKIB1 WDR60 NDNF LOC105375166 ZMYND8 ADRBK2 PDE4C CCNY PRR36 PWWP2A ADRBK1 ANKRD37 COLCA2 GSAP LOC100131257 NPSR1-AS1 HIVEP3 CNNM2 DNAL1 CCDC18-AS1 OLMALINC SAV1 BRWD3 LOC554223 KDM7A LOC101927009 YPEL2 ERICH2 AATK FAM63B PHF3 PAXIP1-AS1 SLC35A3 SSFA2 FAM174A CLK3 RASSF7 FOXN3 KIAA1109 GPR146 DBN1 C1QL1 Untreated v SARS-CoV-2 IntestinalOrganoid 60h Expansion GSE149312 up SLC36A1 NKX3-1 FOXRED2 DCTPP1 SLC10A2 TIMM8B XPO6 ANPEP NMI HRAS KPNA2 AADAC DDX58 EXOSC8 GUCA2A RBP2 CXCL10 ACE2 IFITM3 CXCL16 PPT1 CYP2J2 IFITM1 MTTP FABP2 LAP3 SLC46A3 USP13 MEP1B HSP90AA1 ALG5 SLC7A9 OAS1 PHGR1 SLC27A4 DNMT1 TUBA1C REG4 ANXA13 CYP2C18 STAT1 EIF2AK2 ALG8 RAE1 PEPD TIMM10 OASL ALDOB CXCL2 ISG15 HSPA8 MX1 RABEPK EI24 CISD1 EXOSC4 SAC3D1 ATF5 DANCR MT2A KRT18 STOX1 RGS2 IFI27 MT-ND1 SERPINB5 HOPX MT1E MT-ND2 ATOX1 GPRC5A TACSTD2 AGR2 KRT8 MYO5C COPS9 CD24 SRRT CD2BP2 SLC3A2 PGD HBEGF SF3B4 PPP1R12C CD101 CCT5 EXO1 ZWINT CLSPN TK1 EZH2 PLBD1 IFI44 MT1F MTCH2 ANXA5 RRM2 PAQR4 CDC6 EPSTI1 IL18 NME1 CDC45 DTL PKD2 CYP4V2 ABCE1 EDN1 FOXM1 SRSF1 CNKSR1 CEP170B SPDEF WDR7 CLU DKK1 NUCB2 DHX34 RSAD2 OAS3 FIGNL1 EME1 TCF19 RAD51 CHAF1B FAM83D OIP5 IFIT1 AUNIP MELK ZWILCH NDC80 KIAA0101 PSAT1 IFIT3 OAS2 POLE2 XAF1 CXCL3 GINS1 IL1R2 IL1RN CMPK2 IFIT2 C5ORF28 HERC6 IFIH1 MLKL ADAR PARP9 PARP12 ARC SAMD9L HSH2D IFI35 PARP14 UBE2L6 WARS SP110 ACKR4 C1ORF56 PSME2 LY6E HNRNPM TUBA1B SGK1 ARL2BP IRF9 CLIC5 CA2 SLC34A2 CTGF FABP5 H2AFZ MAT2A ALDH1A1 IFI44L EIF5A MRPL20 QDPR JTB LAMTOR1 CRELD2 LXN CD36 ANAPC5 SSR3 ZNF880 NOS2 TRIM22 KBTBD8 SLC2A11 CHAC1 ZNFX1 ERI3 SNRPG HAT1 HMGB3 POLR2G CDC123 PSMD1 SEC61A1 MRPS33 DCXR TEX30 PSME3 TIPIN COPRS NHP2 EBNA1BP2 VMP1 UCHL3 BOLA3 PCNA EMG1 UGT8 MSH2 LYSMD2 DKC1 ZDHHC6 SNX7 AMD1 STEAP1 PRPF3 SPCS1 ELOVL7 PNPT1 GMNN SEC11C GLRX2 NUP93 ETF1 HSPE1 YAE1D1 LCLAT1 C1ORF122 ARG2 ZFAND2A ODC1 GRHL3 DNAJB9 CADPS2 SRSF2 NOP14 AKR1B10 DPH2 MCM6 CD47 MRPL47 TRIAP1 BCL2L12 TAP2 FEN1 ANXA10 PPM1K CTSE CXCL11 SNHG11 IFI6 TMEM126B TTF2 KIAA1279 LAMP3 DDX60 MBNL3 LOXL1-AS1 SNRNP25 LONRF2 RFC5 PLEKHA6 C19ORF66 PPIL1 C10ORF99 MX2 IFIT5 HERC5 METTL4 TRANK1 DDX60L SAMD9 BOP1 TCTA PLK2 SLC2A10 MARVELD2 SP140L NMUR2 B3GALNT1 PANX1 C8ORF4 HMGN2 UGT2B15 HERC2P2 KRT6B SNHG20 SERPINB8 SLC25A32 NR4A1 LAMP5 PLSCR1 C4BPB ADH6 RARRES1 SFTA2 TIMM23 TRAPPC4 GATB GTF2H5 COX11 NAGK DOK3 FAIM OTUB2 STARD3NL FKBP11 RNF34 SLC35A4 ADH4 C12ORF45 TPM1 PHKG2 MRPL52 SUV39H1 MTA2 DCAF13 C16ORF62 SPINK4 BCCIP DNAJB11 PTP4A1 WDR75 CCAR1 THEM4 ADI1 CLTB MAZ MPC1 OR7E14P NBN NOP56 ATP6V0A2 UTP6 ARFRP1 APEX2 SLC26A3 ZBED5 SLC51B MUC2 GAS7 EWSR1 SLC16A14 PGP FUNDC1 CISD2 MKNK1 CYB561A3 CYP2C19 MRPS7 MRPL40 SCARA3 ZSCAN25 PSMG1 POGLUT1 ZDHHC17 SPTLC3 SLC5A6 PCGF6 HGD GSTM4 BAAT GLTPD2 GPAT3 PRMT6 PPIF MCM3 HOXB4 LPAR2 TFDP1 FAM136A RRP36 UTP11 TMEM138 POLD3 HUS1 RRS1 CCDC137 NOLC1 ZNF746 NFKBIB GPX8 MT1G TMEM19 ADGRF1 RFT1 POLR2L DUT MFSD1 USP42 NOP2 NOL6 SRPRB RPGRIP1L SFXN2 RBM14 COMMD4 GPS1 MANEAL C7ORF50 DSEL POLR3K MARC1 TMX4 SDCBP2-AS1 PCDH7 YTHDC2 RFC3 HSPBP1 HGSNAT DNAJC9 ADNP2 CCDC82 MRPL55 C2CD4A SLC35F6 SMYD5 PALLD SNORA63 SLC25A51 OXCT1 RBM12B DCDC2 SGCB LSM10 SPRTN PLK4 C18ORF54 DNAJC10 RN7SK NABP2 ATP9B TMEM220 LOC105377924 KIAA0196 ALG2 SPAG1 ENTPD7 DPCR1 NCBP1 DPH3 LINC00941 C17ORF89 MTRF1L PROSER1 FTSJ3 PLA2G10 XPO4 ZNF252P METTL1 SLC25A12 LYPD6B GPS2 LYRM4-AS1 LOC100505938 TCEANC2 TXNDC15 LOC105370333 RAD51C KIF24 FAM201A PTPMT1 NIFK ALKBH2 SCAMP3 TMSB4Y DNAJB12 TBC1D24 B3GALT6 LYSMD4 EXOG ARMC5 HRASLS5 CFAP36 TANGO2 RNASEH1 DPM2 ECE2 ZDHHC14 PLLP ALDH5A1 ST7 XKR6 AP5S1 COMMD7 RRN3P1 PDCD2 GFM1 INVS DCUN1D5 CD3EAP IDH3A