Small molecules which mimic Helicobacter pylori gastrointestinal tract infection
Canned Analysis
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General Information
AccessionDCA00009846
TitleSmall molecules which mimic Helicobacter pylori gastrointestinal tract infection
DescriptionThe L1000 database was queried in order to identify small molecule perturbations which mimic the Helicobacter pylori gastrointestinal tract infection gene expression signature in the Gastric Tissue cell type.
Analysis URLhttp://amp.pharm.mssm.edu/L1000CDS2/#/result/58d1cdb2e467bea600fb8b88
Upload DateSeptember 20, 2017
Uploadermaayanlab
Metadata
Analysis CuratorJoel.Dudley
CREEDS IDdz:303
Cell TypeGastric Tissue
Disease NameHelicobacter pylori gastrointestinal tract infection
Organismhuman
UMLS CUIC0585625
L1000CDS2 parameters
Directionmimic
Characteristic Direction parameters
Control SamplesGSM12764, GSM12765, GSM12766, GSM8906, GSM8908, GSM8911, GSM8913, GSM8914, GSM8916, GSM8918, GSM8919, GSM8922
Perturbed SamplesGSM12762, GSM12763, GSM12767, GSM8905, GSM8907, GSM8909, GSM8910, GSM8912, GSM8915, GSM8917, GSM8920, GSM8921, GSM8923, GSM8924, GSM8925
Tools used in the analysis
Dataset Accession
L1000CDS2
Published August 2016
An ultra-fast LINCS L1000 Characteristic Direction signature search engine
7756
Characteristic Direction
Published March 2014
A geometrical multivariate approach to identify differentially expressed genes
26829
Datasets used in the analysis
Keyword
Tool Name
GSE581
Gene Expression Omnibus
Gastric mucosa immune response to Helicobacter pylori
7
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