Small molecules which mimic Vemurafenib treatment
Canned Analysis
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General Information
AccessionDCA00012010
TitleSmall molecules which mimic Vemurafenib treatment
DescriptionThe L1000 database was queried in order to identify small molecule perturbations which mimic the gene expression signature induced by Vemurafenib treatment in the SW1736 thyroid cancer cell line (vemurafenib-refractory cell line) - 48 Hours cell type.
Analysis URLhttp://amp.pharm.mssm.edu/L1000CDS2/#/result/58d1d637e467bea600fb8f54
Upload DateSeptember 20, 2017
Uploadermaayanlab
Metadata
Analysis Curatorcadimo
CREEDS IDdrug:2561
Cell TypeSW1736 thyroid cancer cell line (vemurafenib-refractory cell line) - 48 Hours
Drug NameVemurafenib
DrugBank IDDB08881
Organismhuman
SMILES IDCCCS(=O)(=O)Nc1ccc(c(c1F)C(=O)c1c[nH]c2c1cc(cn2)c1ccc(cc1)Cl)F
L1000CDS2 parameters
Directionmimic
Characteristic Direction parameters
Control SamplesGSM919379, GSM919380, GSM919381
Perturbed SamplesGSM919388, GSM919389, GSM919390
Tools used in the analysis
Dataset Accession
L1000CDS2
Published August 2016
An ultra-fast LINCS L1000 Characteristic Direction signature search engine
7756
Characteristic Direction
Published March 2014
A geometrical multivariate approach to identify differentially expressed genes
26829
Datasets used in the analysis
Keyword
Tool Name
GSE37441
Gene Expression Omnibus
Relief of feedback inhibition of HER3 transcription by RAF and MEK inhibitors attenuates their antitumor effects in BRAF mutant thyroid carcinomas.
42
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