Small molecules which mimic RP1 KO
Canned Analysis
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General Information
AccessionDCA00021069
TitleSmall molecules which mimic RP1 KO
DescriptionThe L1000 database was queried in order to identify small molecule perturbations which mimic the gene expression signature induced by RP1 KO in the Retina - 7 Days cell type.
Analysis URLhttp://amp.pharm.mssm.edu/L1000CDS2/#/result/58d21ad7e467bea600fbad48
Upload DateSeptember 20, 2017
Uploadermaayanlab
Metadata
Analysis Curatorcadimo
CREEDS IDgene:1773
Cell TypeRetina - 7 Days
Gene Symbol (human)RP1
Gene Symbol (mouse)Rp1
Organismmouse
Perturbation TypeKO
L1000CDS2 parameters
Directionmimic
Characteristic Direction parameters
Control SamplesGSM3182, GSM3185, GSM3186
Perturbed SamplesGSM3225, GSM3226, GSM3227
Tools used in the analysis
Dataset Accession
L1000CDS2
Published August 2016
An ultra-fast LINCS L1000 Characteristic Direction signature search engine
7756
Characteristic Direction
Published March 2014
A geometrical multivariate approach to identify differentially expressed genes
26829
Datasets used in the analysis
Keyword
Tool Name
GSE128
Gene Expression Omnibus
Retinitis pigmentosa 1 gene knockout effect on retinas: time course
47
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