Small molecules which mimic HDAC1 Drug inhibition (0.5mM VPA for 16 hs)
Canned Analysis
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General Information
AccessionDCA00021135
TitleSmall molecules which mimic HDAC1 Drug inhibition (0.5mM VPA for 16 hs)
DescriptionThe L1000 database was queried in order to identify small molecule perturbations which mimic the gene expression signature induced by HDAC1 Drug inhibition (0.5mM VPA for 16 hs) in the ES cells cell type.
Analysis URLhttp://amp.pharm.mssm.edu/L1000CDS2/#/result/58d201c8e467bea600fba242
Upload DateSeptember 20, 2017
Uploadermaayanlab
Metadata
Analysis CuratorFabioAmaral
CREEDS IDgene:1804
Cell TypeES cells
Gene Symbol (human)HDAC1
Gene Symbol (mouse)Hdac1
Organismmouse
Perturbation TypeDrug inhibition (0.5mM VPA for 16 hs)
L1000CDS2 parameters
Directionmimic
Characteristic Direction parameters
Control SamplesGSM590259, GSM590260
Perturbed SamplesGSM590261, GSM590262
Tools used in the analysis
Dataset Accession
L1000CDS2
Published August 2016
An ultra-fast LINCS L1000 Characteristic Direction signature search engine
7756
Characteristic Direction
Published March 2014
A geometrical multivariate approach to identify differentially expressed genes
26829
Datasets used in the analysis
Keyword
Tool Name
GSE23956
Gene Expression Omnibus
Gene expression profiles of E14 ESCs treated with low levels of HDAC inhibitors for 16 hrs
7
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