Small molecules which mimic RNF2 KD
Canned Analysis
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General Information
AccessionDCA00021657
TitleSmall molecules which mimic RNF2 KD
DescriptionThe L1000 database was queried in order to identify small molecule perturbations which mimic the gene expression signature induced by RNF2 KD in the U2OS_osteosarcoma cell type.
Analysis URLhttp://amp.pharm.mssm.edu/L1000CDS2/#/result/58d1f419e467bea600fb9c82
Upload DateSeptember 20, 2017
Uploadermaayanlab
Metadata
Analysis CuratorKevin
CREEDS IDgene:2172
Cell TypeU2OS_osteosarcoma
Gene Symbol (human)RNF2
Gene Symbol (mouse)Rnf2
Organismhuman
Perturbation TypeKD
L1000CDS2 parameters
Directionmimic
Characteristic Direction parameters
Control SamplesGSM568505, GSM568506, GSM568507
Perturbed SamplesGSM568508, GSM568509, GSM568510
Tools used in the analysis
Dataset Accession
Characteristic Direction
Published March 2014
A geometrical multivariate approach to identify differentially expressed genes
26829
L1000CDS2
Published August 2016
An ultra-fast LINCS L1000 Characteristic Direction signature search engine
7756
Datasets used in the analysis
Keyword
Tool Name
GSE23035
Gene Expression Omnibus
Ubiquitin carboxyl hydrolase BAP1 depletion effect on osteosarcoma cell line
7
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