Enrichment analysis of genes upregulated in Escherichia coli infection of the central nervous system
Canned Analysis
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General Information
AccessionDCA00060002
TitleEnrichment analysis of genes upregulated in Escherichia coli infection of the central nervous system
DescriptionAn enrichment analysis was performed on the top 500 most upregulated genes identified by applying the Characteristic Direction method comparing gene expression between cells affected by Escherichia coli infection of the central nervous system and healthy control cells in the CNS - Brain (MMHCC) cell type.
Analysis URLhttp://amp.pharm.mssm.edu/Enrichr/enrich?dataset=1btcf
Upload DateSeptember 20, 2017
Uploadermaayanlab
Metadata
Analysis CuratorJoel.Dudley
CREEDS IDdz:341
Cell TypeCNS - Brain (MMHCC)
Disease NameEscherichia coli infection of the central nervous system
Organismmouse
UMLS CUIC1320188
Characteristic Direction parameters
Gene Setupregulated
Gene Set Size500
Control SamplesGSM73001, GSM73002, GSM73014, GSM73015, GSM73016, GSM73017
Perturbed SamplesGSM72507, GSM73000, GSM73018, GSM73019, GSM73340, GSM73341
Tools used in the analysis
Keyword
Dataset Accession
Enrichr
Published May 2016
A comprehensive gene set enrichment analysis web server 2016 update
7759
65
Characteristic Direction
Published March 2014
A geometrical multivariate approach to identify differentially expressed genes
26829
Datasets used in the analysis
Keyword
Tool Name
GSE3253
Gene Expression Omnibus
Age effect on lipopolysaccharide-induced neuroinflammation and sickness behavior
7
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