Enrichment analysis of genes downregulated in in situ carcinoma
Canned Analysis
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General Information
AccessionDCA00060567
TitleEnrichment analysis of genes downregulated in in situ carcinoma
DescriptionAn enrichment analysis was performed on the top 500 most downregulated genes identified by applying the Characteristic Direction method comparing gene expression between cells affected by in situ carcinoma and healthy control cells in the Normal urothelium cells and CIS cells cell type.
Analysis URLhttp://amp.pharm.mssm.edu/Enrichr/enrich?dataset=1bub2
Upload DateSeptember 20, 2017
Uploadermaayanlab
Metadata
Analysis Curatorcadimo
CREEDS IDdz:655
Cell TypeNormal urothelium cells and CIS cells
DO IDDOID:8719
Disease Namein situ carcinoma
Organismmouse
UMLS CUIC0007099
Characteristic Direction parameters
Gene Setdownregulated
Gene Set Size500
Control SamplesGSM1579325, GSM1579326
Perturbed SamplesGSM1579327, GSM1579328
Tools used in the analysis
Keyword
Dataset Accession
Enrichr
Published May 2016
A comprehensive gene set enrichment analysis web server 2016 update
7759
65
Characteristic Direction
Published March 2014
A geometrical multivariate approach to identify differentially expressed genes
26829
Datasets used in the analysis
Keyword
Tool Name
GSE64756
Gene Expression Omnibus
Gene expression data from transgenic and knockout mice
7
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