Enrichment analysis of genes upregulated in sarcoidosis
Canned Analysis
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General Information
AccessionDCA00060674
TitleEnrichment analysis of genes upregulated in sarcoidosis
DescriptionAn enrichment analysis was performed on the top 500 most upregulated genes identified by applying the Characteristic Direction method comparing gene expression between cells affected by sarcoidosis and healthy control cells in the Peripheral blood mononuclear cells cell type.
Analysis URLhttp://amp.pharm.mssm.edu/Enrichr/enrich?dataset=1btg6
Upload DateSeptember 20, 2017
Uploadermaayanlab
Metadata
Analysis Curatorcadimo
CREEDS IDdz:708
Cell TypePeripheral blood mononuclear cells
DO IDDOID:11335
Disease Namesarcoidosis
Organismhuman
UMLS CUIC0036202
Characteristic Direction parameters
Gene Setupregulated
Gene Set Size500
Control SamplesGSM479919, GSM479921, GSM479922, GSM479923, GSM479925, GSM479928, GSM479936, GSM479937, GSM479939, GSM479940, GSM479941, GSM479947, GSM479948, GSM479954, GSM479958, GSM479966, GSM479967, GSM479970, GSM479975, GSM479976
Perturbed SamplesGSM479917, GSM479920, GSM479924, GSM479926, GSM479927, GSM479931, GSM479932, GSM479933, GSM479934, GSM479935, GSM479942, GSM479943, GSM479944, GSM479945, GSM479946, GSM479949, GSM479951, GSM479952, GSM479953, GSM479956, GSM479957, GSM479959, GSM479960, GS
Tools used in the analysis
Keyword
Dataset Accession
Enrichr
Published May 2016
A comprehensive gene set enrichment analysis web server 2016 update
7759
65
Characteristic Direction
Published March 2014
A geometrical multivariate approach to identify differentially expressed genes
26829
Datasets used in the analysis
Keyword
Tool Name
GSE19314
Gene Expression Omnibus
UCSF sarcoidosis and hypersensitivity pneumonitis cohort: peripheral blood mononuclear cells
7
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