Transcriptome comparison of oocytes obtained from in vitro culture and in vivo
Transcriptomics Dataset
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General Information
AccessionGSE68150
TitleTranscriptome comparison of oocytes obtained from in vitro culture and in vivo
DescriptionThe comparison of trancriptomes was part of the study by Pfender, Kuznetsov, Pasternak et al, titled: 'Live imaging RNAi screen reveals genes essential for meiosis in mammalian oocytes'. The goal was to check if the oocytes cultured in vitro in follicles (for RNAi studies) correspond to real gametes obtained directly from mice (in vivo). Apart from functional experiments showing that they can be fertilized and develop into an embryo, we also compared transcriptomes of those oocytes.
Landing Pagehttps://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE68150
RepositoryGene Expression Omnibus
Tools used to analyze the dataset
Dataset Accession
ARCHS4
Published September 2017
ARCHS4 provides access to gene counts from HiSeq 2000 and HiSeq 2500 platforms for human and mouse experiments from GEO ...
4645
Clustergrammer
Published October 2017
Web-based tool for visualizing and analyzing high-dimensional data as interactive and shareable heatmaps
4645
Canned Analyses generated with the dataset
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Tool Name
Interactive heatmap visualization of RNA-seq dataset GSE68150
ARCHS4, Clustergrammer
Highly interactive web-based heatmap visualization of the top 500 most variable genes in t...
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