Foxd3 promotes the exit from nave pluripotency and prevents germline specification through enhancer decommissioning [RNA-Seq]
Transcriptomics Dataset
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General Information
AccessionGSE70546
TitleFoxd3 promotes the exit from nave pluripotency and prevents germline specification through enhancer decommissioning [RNA-Seq]
DescriptionFollowing implantation, mouse epiblast cells transit from a nave to a primed state in which they are competent for both somatic and primordial germ cell (PGC) specification. Using mouse embryonic stem cells (mESC) as an in vitro model to study the transcriptional regulatory principles orchestrating peri-implantation development, here we show that the transcription factor Foxd3 is necessary for the exit from nave pluripotency and the progression to a primed pluripotent state. During this transition, Foxd3 acts as a repressor that dismantles a significant fraction of the nave pluripotency expression program through the decommissioning of active enhancers associated with key nave pluripotency and early germline genes. Subsequently, Foxd3 needs to be silenced in primed pluripotent cells to allow the reactivation of relevant genes required for proper PGC specification. Our findings uncover a wave of activation-deactivation of Foxd3 as a crucial step for the exit from nave pluripotency and subsequent PGC specification.
Landing Pagehttps://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70546
RepositoryGene Expression Omnibus
Tools used to analyze the dataset

Dataset Accession

Clustergrammer
Published October 2017
Web-based tool for visualizing and analyzing high-dimensional data as interactive and shareable heatmaps
4645
ARCHS4
Published September 2017
ARCHS4 provides access to gene counts from HiSeq 2000 and HiSeq 2500 platforms for human and mouse experiments from GEO ...
4645
Canned Analyses generated with the dataset

Dataset Accession
Tool Name

Interactive heatmap visualization of RNA-seq dataset GSE70546
Highly interactive web-based heatmap visualization of the top 500 most variable genes in t...
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