Foxa2 and Cdx2 cooperate with Nkx2-1 to inhibit lung adenocarcinoma metastasis
Transcriptomics Dataset
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General Information
AccessionGSE71629
TitleFoxa2 and Cdx2 cooperate with Nkx2-1 to inhibit lung adenocarcinoma metastasis
DescriptionDespite the fact that the majority of lung cancer deaths are due to metastasis, the molecular mechanisms driving metastat ic progression are poorly understood. Here, we present evidence that loss of Foxa2 and Cdx2 synergizes with loss of Nkx2- 1 to fully activate the metastatic program. These three lineage-specific transcription factors are consistently downregul ated in metastatic cells compared to non-metastatic cells. Knockdown of these three factors acts synergistically and is s ufficient to promote the metastatic potential of non-metastatic cells to that of naturally arising metastatic cells in vi vo. Furthermore, silencing of these three transcription factors is sufficient to account for a significant fraction of th e genes expression differences between the non-metastatic and metastatic states in lung adenocarcinoma, including upregul ated expression of the invadopodia component Tks5long, the embryonal proto-oncogene Hmga2, and the epithelial-to-mesenchy mal mediator Snail. Finally, analyses of tumors from a genetically-engineered mouse model and patients show that low expr ession of Nkx2-1, Foxa2, and Cdx2 strongly correlates with more advanced tumors and worse survival. Our findings reveal t hat a large part of the complex transcriptional network in metastasis can be controlled by a small number of regulatory n odes that function redundantly, and loss of multiple nodes is required to fully activate the metastatic program.
Landing Pagehttps://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71629
RepositoryGene Expression Omnibus
Tools used to analyze the dataset

Dataset Accession

Clustergrammer
Published October 2017
Web-based tool for visualizing and analyzing high-dimensional data as interactive and shareable heatmaps
4645
ARCHS4
Published September 2017
ARCHS4 provides access to gene counts from HiSeq 2000 and HiSeq 2500 platforms for human and mouse experiments from GEO ...
4645
Canned Analyses generated with the dataset

Dataset Accession
Tool Name

Interactive heatmap visualization of RNA-seq dataset GSE71629
Highly interactive web-based heatmap visualization of the top 500 most variable genes in t...
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